Clone Sequence Records
BO12916.3prime Sequence
859 bp (681 high quality bases) assembled on 2006-05-08
> BO12916.3prime
ATGGTCTAGAAAGCTTGCAAGCAGGGGTCGCAGAAAACTCAACCAGGCCA
CCTTAAGCAGGGCCAGTGCAAAGAGAAGGGAACCCACGCTGGTGATTATC
AACGAGATGATATCTCTCTTGGCATGCTGATCCACTCTGCCCACCAAGAA
GCTGTGTATCACGGTGCTGGTAATGTGGGCGCCATCGAAACCAAAGCAGG
GAATGGCATTGATCAACGCCAATCCTATGCTGAAGACCACGTTATACTTG
AGGAGCAGCAGCCAGGCATCCGGCCAGGCTGCCTTTAATAAGCTATATCT
CGGCACAAAGGCGGATACCTCCACAGTTCGAGTGACATCCCATGGATGGC
CCACATAGATCACCGGCGGCAGCTTCTCTCCGCGAAAATTCTGTCGCTTG
AACGTCATTATGGCAGTGATATTTCGTATAAGCGGTCGTAGGCAGAATCC
CTCGTTGCAAACTCCGGACGAGCAGTGCTCGGAGACCTCCTCCAAAGTGC
GGCGCACATTGAGACATACATGCTGCGGCAGCTCCACCGGCACATCTCCA
TTTGCGTCCTCCACCACCTCGAAGCAGCTTACGTTCGGATTTAGTTCATC
ACAGCACTGTAGCTGACCATCAATGCTATGATGTGAGATGGCGCTGCTTT
CGTCGTTAAGCTGCACGAAGTCCGCACTCACACAGTAGCCCGGCTTGAGC
TTCAGAGAGTTCTGCAGGCATGTCACCCAACTCTCCTCGCTGTTTACTGG
GCAGCCGTTTACTTGGGTTATTTGATTGTCCACTTGCAAGCCGCGCTCTC
CCCTCAGCGGGGATTTCCTTGTTAGTTCAATGACCCCTACGTGTTGGTTG
TAAGCGAAC
BO12916.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8988-PA | 1527 | S2P-RA | 687..1524 | 856..19 | 4140 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 974..1811 | 856..19 | 4160 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842312..11843149 | 19..856 | 4160 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:30 has no hits.
BO12916.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:41 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-PA | 684..1527 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:23 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8988-PA | 684..1527 | 15..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:47 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 971..1815 | 14..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:13 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 971..1815 | 14..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:13 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842308..11843152 | 14..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:47 Download gff for
BO12916.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7729813..7730657 | 14..859 | 99 | | Plus |
BO12916.5prime Sequence
816 bp (753 high quality bases) assembled on 2006-05-08
> BO12916.5prime
GAAGTTATCAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCAT
CGCTTTATGGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATG
CACTACCCGTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTT
CATGAGCCTCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCT
GGGGATCTGCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTT
AATGTAGGAGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCT
GCTCATTGCCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTG
TATCCTCGCCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGC
GTCAACTTGCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCT
CTGCTTGGTGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGG
ATGTGCCTGTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTA
GCATACACGGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCG
CAAGCTACGTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTG
GCGTGTGCTATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTG
TACGCTTACAACCCACACGTAGTGGTCACTGAACTAACAAGGAAATCCCC
GCTGAGGGGAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTAA
ACGGCTGCCCAGTAAA
BO12916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8988-PA | 1527 | S2P-RA | 1..800 | 17..816 | 3975 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1087 | 16..816 | 3990 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:02:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11843390..11843829 | 529..90 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11843036..11843324 | 816..528 | 1430 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 91..16 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:02:55 has no hits.
BO12916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:42 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:24 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8988-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:07 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1084 | 9..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:23 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1084 | 9..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:23 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11843039..11843322 | 530..813 | 99 | <- | Minus |
| 2R | 11843390..11843827 | 92..529 | 100 | <- | Minus |
| 2R | 11843879..11843958 | 9..91 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:07 Download gff for
BO12916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7731384..7731463 | 9..91 | 96 | | Minus |
| arm_2R | 7730544..7730827 | 530..813 | 99 | <- | Minus |
| arm_2R | 7730895..7731332 | 92..529 | 100 | <- | Minus |
BO12916.complete Sequence
1558 bp assembled on 2009-08-24
GenBank Submission: KX796403
> BO12916.complete
GAAGTTATCAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCAT
CGCTTTATGGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATG
CACTACCCGTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTT
CATGAGCCTCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCT
GGGGATCTGCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTT
AATGTAGGAGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCT
GCTCATTGCCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTG
TATCCTCGCCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGC
GTCAACTTGCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCT
CTGCTTGGTGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGG
ATGTGCCTGTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTA
GCATACACGGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCG
CAAGCTACGTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTG
GCGTGTGCTATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTG
TACGCTTACAACCAACACGTAGTGGTCACTGAACTAACAAGGAAATCCCC
GCTGAGGGGAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTAA
ACGGCTGCCCAGTAAACAGCGAGGAGAGTTGGGTGACATGCCTGCAGAAC
TCTCTGAAGCTCAAGCCGGGCTACTGTGTGAGTGCGGACTTCGTGCAGCT
TAACGACGAAAGCAGCGCCATCTCACATCATAGCATTGATGGTCAGCTAC
AGTGCTGTGATGAACTAAATCCGAACGTAAGCTGCTTCGAGGTGGTGGAG
GACGCAAATGGAGATGTGCCGGTGGAGCTGCCGCAGCATGTATGTCTCAA
TGTGCGCCGCACTTTGGAGGAGGTCTCCGAGCACTGCTCGTCCGGAGTTT
GCAACGAGGGATTCTGCCTACGACCGCTTATACGAAATATCACTGCCATA
ATGACGTTCAAGCGACAGAATTTTCGCGGAGAGAAGCTGCCGCCGGTGAT
CTATGTGGGCCATCCATGGGATGTCACTCGAACTGTGGAGGTATCCGCCT
TTGTGCCGAGATATAGCTTATTAAAGGCAGCCTGGCCGGATGCCTGGCTG
CTGCTCCTCAAGTATAACGTGGTCTTCAGCATAGGATTGGCGTTGATCAA
TGCCATTCCCTGCTTTGGTTTCGATGGCGCCCACATTACCAGCACCGTGA
TACACAGCTTCTTGGTGGGCAGAGTGGATCAGCATGCCAAGAGAGATATC
ATCTCGTTGATAATCACCAGCGTGGGTTCCCTTCTCTTTGCACTGGCCCT
GCTTAAGGTGGCCTGGTTGAGTTTTCTGCGACCCCTGCTTGCAAGCTTTC
TAGACCAT
BO12916.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 1527 | CG8988-PA | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1811 | 16..1540 | 7625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842312..11843324 | 1540..528 | 5065 | 100 | Minus |
| 2R | 25286936 | 2R | 11843390..11843829 | 529..90 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 91..16 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:02 has no hits.
BO12916.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:02:57 Download gff for
BO12916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 286..1809 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:50:48 Download gff for
BO12916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 288..1811 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:14 Download gff for
BO12916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 288..1811 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:14 Download gff for
BO12916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842310..11843322 | 530..1542 | 99 | <- | Minus |
| 2R | 11843390..11843827 | 92..529 | 100 | <- | Minus |
| 2R | 11843879..11843953 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:50:48 Download gff for
BO12916.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7729815..7730827 | 530..1542 | 99 | <- | Minus |
| arm_2R | 7730895..7731332 | 92..529 | 100 | <- | Minus |
| arm_2R | 7731384..7731458 | 17..91 | 100 | | Minus |
BO12916.pep Sequence
Translation from 16 to 1558
> BO12916.pep
MDPFVFFIVLASLYGVLYFFDRFFKSCMHYPYDAFLKNTGLSINFMSLHW
HTSAFNRTLLRWGSAGNSCTRRVMITSFNVGVLVTFSLLPIGLILLIATI
FSSGEQDSSSSVSSPVGVPVQLEILLPGVNLPLEEIGYYITTLVLCLVVH
EMGHALAAVMEDVPVTGFGIKFIFCLPLAYTELSHDHLNSLRWFRKLRVL
CAGIWHNFVFAGVCYLLISTVGITMSPLYAYNQHVVVTELTRKSPLRGER
GLQVDNQITQVNGCPVNSEESWVTCLQNSLKLKPGYCVSADFVQLNDESS
AISHHSIDGQLQCCDELNPNVSCFEVVEDANGDVPVELPQHVCLNVRRTL
EEVSEHCSSGVCNEGFCLRPLIRNITAIMTFKRQNFRGEKLPPVIYVGHP
WDVTRTVEVSAFVPRYSLLKAAWPDAWLLLLKYNVVFSIGLALINAIPCF
GFDGAHITSTVIHSFLVGRVDQHAKRDIISLIITSVGSLLFALALLKVAW
LSFLRPLLASFLDH
BO12916.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-PA | 508 | CG8988-PA | 1..508 | 1..508 | 2671 | 100 | Plus |
