Clone BO12920 Report

Search the DGRC for BO12920

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG4866-RA
Protein status:BO12920.pep: validated full length
Sequenced Size:577

Clone Sequence Records

BO12920.3prime Sequence

575 bp (574 high quality bases) assembled on 2006-05-08

> BO12920.3prime
ATGGTCTAGAAAGCTTGCCATTTGGAAATCGTCACGCATGTCGTTGTAGC
GGAGTACATGCTCCTTGATCTTGGAGCCATCCACCCAGGTGACAAAGTCC
TCGAGGTTTCTGGAGACCAGAAAAGCAGGATCCTTAATCATTTCCGGACC
AACACGCACATGACCATGCTCTATGAGGTCTGTGGCCGCTTTCAGGTGCT
CCGACATTCGAAGTTTCACCATGATCACGGGTAGACGACGTCGGCAAAAG
TGGCTGGCAGATATCTTGGCCGCCGTTTCCAAAGTAAGCTGATCATTGGA
AACTCCCATGGCGTGCAGCTTGTTTAGGAGCATGGTGGTGGCCTCCGTCT
TGAAAGGTTCTGAAGCATCCAGCTTAGCTATCCTCTCTGCCAGTTCCCGT
ATCTCCCTGGACAACTTGTTATACTTGGTGTAGTCCTCCCTTTTTTGAAT
GTGAAAGCGCCTAAGGATTTTGTTCTCCTTGCCGCCGTTGTCCACTTTCC
AGGTGATGAAGTCCACCTTTTTAAGCAGCTTCTGCTCATGAAATTTGAGT
TTACGAACCATGTCGACTGATAACT

BO12920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 546 CG4866-RA 1..543 561..19 2715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..611 561..19 2715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 424..213 1060 100 Minus
2R 25286936 2R 17518753..17518946 212..19 970 100 Minus
2R 25286936 2R 17518291..17518430 561..422 700 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:37:11 has no hits.

BO12920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:49 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 18..561 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:31 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 18..561 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:49 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 19..561 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:10 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 19..561 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:10 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17518291..17518427 425..561 100 -> Minus
2R 17518484..17518695 213..424 100 -> Minus
2R 17518753..17518946 19..212 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:49 Download gff for BO12920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405796..13405932 425..561 100 -> Minus
arm_2R 13405989..13406200 213..424 100 -> Minus
arm_2R 13406258..13406451 19..212 100   Minus

BO12920.5prime Sequence

575 bp (574 high quality bases) assembled on 2006-05-08

> BO12920.5prime
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGGCAAGCTTTCTAGACC

BO12920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 546 CG4866-RA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:15:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..611 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 154..365 1060 100 Plus
2R 25286936 2R 17518753..17518946 366..559 970 100 Plus
2R 25286936 2R 17518291..17518430 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:15:07 has no hits.

BO12920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:50 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 17..560 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:33 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-PA 1..546 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:09 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 17..559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:21:21 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 17..559 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:21:21 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17518291..17518427 17..153 100 -> Plus
2R 17518484..17518695 154..365 100 -> Plus
2R 17518753..17518946 366..559 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:09 Download gff for BO12920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405796..13405932 17..153 100 -> Plus
arm_2R 13405989..13406200 154..365 100 -> Plus
arm_2R 13406258..13406451 366..559 100   Plus

BO12920.complete Sequence

577 bp assembled on 2006-10-11

GenBank Submission: FJ632631

> BO12920.complete
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGGCAAGCTTTCTAGACCAT

BO12920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 546 CG4866-PA 1..543 17..559 2715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-RA 692 CG4866-RA 69..611 17..559 2715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17518484..17518695 154..365 1060 100 Plus
2R 25286936 2R 17518753..17518946 366..559 970 100 Plus
2R 25286936 2R 17518291..17518430 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:32:02 has no hits.

BO12920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:59 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 1..546 17..560 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:17 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 26..568 17..559 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:06 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 17..561 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:00 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 26..568 17..559 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:10 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
CG4866-RA 69..611 17..561 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:10 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17518291..17518427 17..153 100 -> Plus
2R 17518484..17518695 154..365 100 -> Plus
2R 17518753..17518946 366..561 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:06 Download gff for BO12920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13405796..13405932 17..153 100 -> Plus
arm_2R 13405989..13406200 154..365 100 -> Plus
arm_2R 13406258..13406451 366..561 98   Plus

BO12920.pep Sequence

Translation from 16 to 577

> BO12920.pep
MVRKLKFHEQKLLKKVDFITWKVDNGGKENKILRRFHIQKREDYTKYNKL
SREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGVSNDQLTLETAAKI
SASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVRVGPEMIKDPAFLVS
RNLEDFVTWVDGSKIKEHVLRYNDMRDDFQMASFLDH

BO12920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4866-PA 181 CG4866-PA 1..181 1..181 932 100 Plus