Clone Sequence Records
BO12920.3prime Sequence
575 bp (574 high quality bases) assembled on 2006-05-08
> BO12920.3prime
ATGGTCTAGAAAGCTTGCCATTTGGAAATCGTCACGCATGTCGTTGTAGC
GGAGTACATGCTCCTTGATCTTGGAGCCATCCACCCAGGTGACAAAGTCC
TCGAGGTTTCTGGAGACCAGAAAAGCAGGATCCTTAATCATTTCCGGACC
AACACGCACATGACCATGCTCTATGAGGTCTGTGGCCGCTTTCAGGTGCT
CCGACATTCGAAGTTTCACCATGATCACGGGTAGACGACGTCGGCAAAAG
TGGCTGGCAGATATCTTGGCCGCCGTTTCCAAAGTAAGCTGATCATTGGA
AACTCCCATGGCGTGCAGCTTGTTTAGGAGCATGGTGGTGGCCTCCGTCT
TGAAAGGTTCTGAAGCATCCAGCTTAGCTATCCTCTCTGCCAGTTCCCGT
ATCTCCCTGGACAACTTGTTATACTTGGTGTAGTCCTCCCTTTTTTGAAT
GTGAAAGCGCCTAAGGATTTTGTTCTCCTTGCCGCCGTTGTCCACTTTCC
AGGTGATGAAGTCCACCTTTTTAAGCAGCTTCTGCTCATGAAATTTGAGT
TTACGAACCATGTCGACTGATAACT
BO12920.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 546 | CG4866-RA | 1..543 | 561..19 | 2715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..611 | 561..19 | 2715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 424..213 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 17518753..17518946 | 212..19 | 970 | 100 | Minus |
2R | 25286936 | 2R | 17518291..17518430 | 561..422 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:37:11 has no hits.
BO12920.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:49 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 18..561 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:31 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 18..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:49 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 19..561 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:10 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 19..561 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:10 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518291..17518427 | 425..561 | 100 | -> | Minus |
2R | 17518484..17518695 | 213..424 | 100 | -> | Minus |
2R | 17518753..17518946 | 19..212 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:49 Download gff for
BO12920.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405796..13405932 | 425..561 | 100 | -> | Minus |
arm_2R | 13405989..13406200 | 213..424 | 100 | -> | Minus |
arm_2R | 13406258..13406451 | 19..212 | 100 | | Minus |
BO12920.5prime Sequence
575 bp (574 high quality bases) assembled on 2006-05-08
> BO12920.5prime
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGGCAAGCTTTCTAGACC
BO12920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 546 | CG4866-RA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..611 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 154..365 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 17518753..17518946 | 366..559 | 970 | 100 | Plus |
2R | 25286936 | 2R | 17518291..17518430 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:15:07 has no hits.
BO12920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:49:50 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:30:33 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-PA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:56:09 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:21:21 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 17..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:21:21 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518291..17518427 | 17..153 | 100 | -> | Plus |
2R | 17518484..17518695 | 154..365 | 100 | -> | Plus |
2R | 17518753..17518946 | 366..559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:56:09 Download gff for
BO12920.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405796..13405932 | 17..153 | 100 | -> | Plus |
arm_2R | 13405989..13406200 | 154..365 | 100 | -> | Plus |
arm_2R | 13406258..13406451 | 366..559 | 100 | | Plus |
BO12920.complete Sequence
577 bp assembled on 2006-10-11
GenBank Submission: FJ632631
> BO12920.complete
GAAGTTATCAGTCGACATGGTTCGTAAACTCAAATTTCATGAGCAGAAGC
TGCTTAAAAAGGTGGACTTCATCACCTGGAAAGTGGACAACGGCGGCAAG
GAGAACAAAATCCTTAGGCGCTTTCACATTCAAAAAAGGGAGGACTACAC
CAAGTATAACAAGTTGTCCAGGGAGATACGGGAACTGGCAGAGAGGATAG
CTAAGCTGGATGCTTCAGAACCTTTCAAGACGGAGGCCACCACCATGCTC
CTAAACAAGCTGCACGCCATGGGAGTTTCCAATGATCAGCTTACTTTGGA
AACGGCGGCCAAGATATCTGCCAGCCACTTTTGCCGACGTCGTCTACCCG
TGATCATGGTGAAACTTCGAATGTCGGAGCACCTGAAAGCGGCCACAGAC
CTCATAGAGCATGGTCATGTGCGTGTTGGTCCGGAAATGATTAAGGATCC
TGCTTTTCTGGTCTCCAGAAACCTCGAGGACTTTGTCACCTGGGTGGATG
GCTCCAAGATCAAGGAGCATGTACTCCGCTACAACGACATGCGTGACGAT
TTCCAAATGGCAAGCTTTCTAGACCAT
BO12920.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 546 | CG4866-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-RA | 692 | CG4866-RA | 69..611 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17518484..17518695 | 154..365 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 17518753..17518946 | 366..559 | 970 | 100 | Plus |
2R | 25286936 | 2R | 17518291..17518430 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:02 has no hits.
BO12920.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:59 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 1..546 | 17..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:30:17 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 26..568 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:06 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 17..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:00 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 26..568 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:10 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4866-RA | 69..611 | 17..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:10 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17518291..17518427 | 17..153 | 100 | -> | Plus |
2R | 17518484..17518695 | 154..365 | 100 | -> | Plus |
2R | 17518753..17518946 | 366..561 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:06 Download gff for
BO12920.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13405796..13405932 | 17..153 | 100 | -> | Plus |
arm_2R | 13405989..13406200 | 154..365 | 100 | -> | Plus |
arm_2R | 13406258..13406451 | 366..561 | 98 | | Plus |
BO12920.pep Sequence
Translation from 16 to 577
> BO12920.pep
MVRKLKFHEQKLLKKVDFITWKVDNGGKENKILRRFHIQKREDYTKYNKL
SREIRELAERIAKLDASEPFKTEATTMLLNKLHAMGVSNDQLTLETAAKI
SASHFCRRRLPVIMVKLRMSEHLKAATDLIEHGHVRVGPEMIKDPAFLVS
RNLEDFVTWVDGSKIKEHVLRYNDMRDDFQMASFLDH
BO12920.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4866-PA | 181 | CG4866-PA | 1..181 | 1..181 | 932 | 100 | Plus |