Clone Sequence Records
BO12932.3prime Sequence
742 bp (710 high quality bases) assembled on 2006-05-08
> BO12932.3prime
ATGGTCTAGAAAGCTTGCTTCGGCAGCGATAAGCTGCGTAATGCCGTTTG
TGGTGATCAGCTGCAACAGGGATCCAGTTTTGGGCCTCTCCTGATCTTGG
GTCCACTTAAGGAAAAGTCCGGCCACCTCGGTGAGCGGTGTCCAGGTTCC
AAAATCTGCATCCGGCATCCATTTACGGTTCATGGGTGTATCTAGAGTTA
CGGGAAGTATGGACACAGCCAGGGAACCAGCTGGCAGACCGGATTTCTCA
GCGCCCAGCGAGCGGGTCAGCTGGTGGACAGCTGCCTTGGCCATTCCATA
GCCGATCATACCGGGTGTGCCCTCCAAAGCGGGCTTAGCTCCAGTGAGAG
CCAGCAAGCCTCCGGCCTTTAGATGCTGAGCAGCCACAGCTGCCGAAATG
GCGGAGGTCAACACGCTCTGCTTCCACATGAGATCGGCATTCTTGGCCAG
ATCCTTCTTGGCATTACCACCTGCCCAGCCGCCAGCCACGCAGATGACGG
CATCCAGTTTCTCGCCGGCAAGGGATTCCCCGACTTTGGACACCACCGTT
TCCTCCTGTTCCACCCAACTAGCATCGCGTGGCACCACAATGCTAACGTC
GGCCTTCTCGTTCTCCGTCAGATCGATGCTGCCAACCCAATAATTGTTGG
CTTTAAAGTGATCGACACAGGCCGAACCCAAGGCTCCTTTGCCACCGTAA
ATAACCACTCGACCTGCGGACATGTCGGACTGATAACTTCGT
BO12932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4665-PC | 708 | Dhpr-RC | 1..705 | 723..19 | 3525 | 100 | Minus |
CG4665-PA | 708 | Dhpr-RA | 1..705 | 723..19 | 3525 | 100 | Minus |
CG4665-PB | 708 | Dhpr-RB | 1..705 | 723..19 | 3525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..745 | 724..19 | 3530 | 100 | Minus |
Dhpr-RA | 1261 | CG4665-RA | 247..952 | 724..19 | 3530 | 100 | Minus |
Dhpr-RC | 1087 | CG4665-RC | 247..952 | 724..19 | 3530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135607 | 639..19 | 3105 | 100 | Minus |
3L | 28110227 | 3L | 9134806..9134890 | 724..640 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:40:10 has no hits.
BO12932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:10 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PA | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:00 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PB | 1..708 | 18..723 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:49:26 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 237..958 | 12..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:46 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 237..958 | 12..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:46 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134796..9134890 | 640..732 | 95 | -> | Minus |
3L | 9134987..9135613 | 12..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:49:26 Download gff for
BO12932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127896..9127990 | 640..732 | 95 | -> | Minus |
arm_3L | 9128087..9128713 | 12..639 | 99 | | Minus |
BO12932.5prime Sequence
739 bp (707 high quality bases) assembled on 2006-05-08
> BO12932.5prime
GAAGTTATCAGTCCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGC
AAAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTA
TTGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCA
TTGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTG
TCCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTG
CGTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGA
ATGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCA
GCTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGG
AGCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGG
CCAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCC
GGTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGA
TACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGA
CACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAG
GAGAGGCCCAAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCA
TTACGCAGCTTATCGCTGCCGAAGCAAGCTTTCTAGACC
BO12932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4665-PC | 708 | Dhpr-RC | 1..646 | 18..663 | 3230 | 100 | Plus |
CG4665-PA | 708 | Dhpr-RA | 1..646 | 18..663 | 3230 | 100 | Plus |
CG4665-PB | 708 | Dhpr-RB | 1..646 | 18..663 | 3230 | 100 | Plus |
CG4665-PC | 708 | Dhpr-RC | 643..705 | 661..723 | 315 | 100 | Plus |
CG4665-PA | 708 | Dhpr-RA | 643..705 | 661..723 | 315 | 100 | Plus |
CG4665-PB | 708 | Dhpr-RB | 643..705 | 661..723 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:08:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..745 | 17..723 | 3510 | 99.9 | Plus |
Dhpr-RA | 1261 | CG4665-RA | 247..952 | 17..723 | 3510 | 99.9 | Plus |
Dhpr-RC | 1087 | CG4665-RC | 247..952 | 17..723 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135607 | 102..723 | 3060 | 99.8 | Plus |
3L | 28110227 | 3L | 9134806..9134890 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:08:44 has no hits.
BO12932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:11 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PA | 1..708 | 18..724 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:01 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4665-PB | 1..708 | 18..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:50 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 237..958 | 9..730 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:04 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 237..958 | 9..730 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:04 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134796..9134890 | 9..101 | 95 | -> | Plus |
3L | 9134987..9135613 | 102..730 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:50 Download gff for
BO12932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127896..9127990 | 9..101 | 95 | -> | Plus |
arm_3L | 9128087..9128713 | 102..730 | 99 | | Plus |
BO12932.complete Sequence
740 bp assembled on 2008-08-15
GenBank Submission: FJ632632
> BO12932.complete
GAAGTTATCAGTCCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGC
AAAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTA
TTGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCA
TTGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTG
TCCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTG
CGTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGA
ATGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCA
GCTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGG
AGCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGG
CCAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCC
GGTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGA
TACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGA
CACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAG
GAGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCAT
TACGCAGCTTATCGCTGCCGAAGCAAGCTTTCTAGACCAT
BO12932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 708 | CG4665-PB | 1..705 | 18..722 | 3525 | 100 | Plus |
Dhpr-RA | 708 | CG4665-PA | 1..705 | 18..722 | 3525 | 100 | Plus |
Dhpr-RC | 708 | CG4665-PC | 1..705 | 18..722 | 3525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-RB | 880 | CG4665-RB | 40..745 | 17..722 | 3530 | 100 | Plus |
Dhpr-RA | 1261 | CG4665-RA | 247..952 | 17..722 | 3530 | 100 | Plus |
Dhpr-RC | 1087 | CG4665-RC | 247..952 | 17..722 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9134987..9135607 | 102..722 | 3105 | 100 | Plus |
3L | 28110227 | 3L | 9134806..9134890 | 17..101 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:31:53 has no hits.
BO12932.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:21 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RB | 30..751 | 9..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:40 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..952 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:51 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RB | 40..745 | 17..724 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:45 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dhpr-RC | 247..952 | 17..724 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:45 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9134806..9134890 | 17..101 | 100 | -> | Plus |
3L | 9134987..9135607 | 102..724 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:40 Download gff for
BO12932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9127906..9127990 | 17..101 | 100 | -> | Plus |
arm_3L | 9128087..9128707 | 102..724 | 99 | | Plus |
BO12932.pep Sequence
Translation from 17 to 740
> BO12932.pep
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAEASFLDH
BO12932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhpr-PB | 235 | CG4665-PB | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PA | 235 | CG4665-PA | 1..235 | 1..235 | 1204 | 100 | Plus |
Dhpr-PC | 235 | CG4665-PC | 1..235 | 1..235 | 1204 | 100 | Plus |