Clone BO12932 Report

Search the DGRC for BO12932

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptDhpr-RA
Protein status:BO12932.pep: Imported from assembly
Sequenced Size:740

Clone Sequence Records

BO12932.3prime Sequence

742 bp (710 high quality bases) assembled on 2006-05-08

> BO12932.3prime
ATGGTCTAGAAAGCTTGCTTCGGCAGCGATAAGCTGCGTAATGCCGTTTG
TGGTGATCAGCTGCAACAGGGATCCAGTTTTGGGCCTCTCCTGATCTTGG
GTCCACTTAAGGAAAAGTCCGGCCACCTCGGTGAGCGGTGTCCAGGTTCC
AAAATCTGCATCCGGCATCCATTTACGGTTCATGGGTGTATCTAGAGTTA
CGGGAAGTATGGACACAGCCAGGGAACCAGCTGGCAGACCGGATTTCTCA
GCGCCCAGCGAGCGGGTCAGCTGGTGGACAGCTGCCTTGGCCATTCCATA
GCCGATCATACCGGGTGTGCCCTCCAAAGCGGGCTTAGCTCCAGTGAGAG
CCAGCAAGCCTCCGGCCTTTAGATGCTGAGCAGCCACAGCTGCCGAAATG
GCGGAGGTCAACACGCTCTGCTTCCACATGAGATCGGCATTCTTGGCCAG
ATCCTTCTTGGCATTACCACCTGCCCAGCCGCCAGCCACGCAGATGACGG
CATCCAGTTTCTCGCCGGCAAGGGATTCCCCGACTTTGGACACCACCGTT
TCCTCCTGTTCCACCCAACTAGCATCGCGTGGCACCACAATGCTAACGTC
GGCCTTCTCGTTCTCCGTCAGATCGATGCTGCCAACCCAATAATTGTTGG
CTTTAAAGTGATCGACACAGGCCGAACCCAAGGCTCCTTTGCCACCGTAA
ATAACCACTCGACCTGCGGACATGTCGGACTGATAACTTCGT

BO12932.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4665-PC 708 Dhpr-RC 1..705 723..19 3525 100 Minus
CG4665-PA 708 Dhpr-RA 1..705 723..19 3525 100 Minus
CG4665-PB 708 Dhpr-RB 1..705 723..19 3525 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..745 724..19 3530 100 Minus
Dhpr-RA 1261 CG4665-RA 247..952 724..19 3530 100 Minus
Dhpr-RC 1087 CG4665-RC 247..952 724..19 3530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135607 639..19 3105 100 Minus
3L 28110227 3L 9134806..9134890 724..640 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:40:10 has no hits.

BO12932.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:10 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PA 1..708 18..723 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:00 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PB 1..708 18..723 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:49:26 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 237..958 12..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:13:46 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 237..958 12..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:13:46 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9134796..9134890 640..732 95 -> Minus
3L 9134987..9135613 12..639 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:49:26 Download gff for BO12932.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127896..9127990 640..732 95 -> Minus
arm_3L 9128087..9128713 12..639 99   Minus

BO12932.5prime Sequence

739 bp (707 high quality bases) assembled on 2006-05-08

> BO12932.5prime
GAAGTTATCAGTCCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGC
AAAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTA
TTGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCA
TTGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTG
TCCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTG
CGTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGA
ATGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCA
GCTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGG
AGCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGG
CCAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCC
GGTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGA
TACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGA
CACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAG
GAGAGGCCCAAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCA
TTACGCAGCTTATCGCTGCCGAAGCAAGCTTTCTAGACC

BO12932.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG4665-PC 708 Dhpr-RC 1..646 18..663 3230 100 Plus
CG4665-PA 708 Dhpr-RA 1..646 18..663 3230 100 Plus
CG4665-PB 708 Dhpr-RB 1..646 18..663 3230 100 Plus
CG4665-PC 708 Dhpr-RC 643..705 661..723 315 100 Plus
CG4665-PA 708 Dhpr-RA 643..705 661..723 315 100 Plus
CG4665-PB 708 Dhpr-RB 643..705 661..723 315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..745 17..723 3510 99.9 Plus
Dhpr-RA 1261 CG4665-RA 247..952 17..723 3510 99.9 Plus
Dhpr-RC 1087 CG4665-RC 247..952 17..723 3510 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135607 102..723 3060 99.8 Plus
3L 28110227 3L 9134806..9134890 17..101 425 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:08:44 has no hits.

BO12932.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:11 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PA 1..708 18..724 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:01 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4665-PB 1..708 18..724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:50 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 237..958 9..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:27:04 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 237..958 9..730 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:27:04 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9134796..9134890 9..101 95 -> Plus
3L 9134987..9135613 102..730 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:50 Download gff for BO12932.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127896..9127990 9..101 95 -> Plus
arm_3L 9128087..9128713 102..730 99   Plus

BO12932.complete Sequence

740 bp assembled on 2008-08-15

GenBank Submission: FJ632632

> BO12932.complete
GAAGTTATCAGTCCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGC
AAAGGAGCCTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTA
TTGGGTTGGCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCA
TTGTGGTGCCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTG
TCCAAAGTCGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTG
CGTGGCTGGCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGA
ATGCCGATCTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCA
GCTGTGGCTGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGG
AGCTAAGCCCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGG
CCAAGGCAGCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCC
GGTCTGCCAGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGA
TACACCCATGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGA
CACCGCTCACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAG
GAGAGGCCCAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCAT
TACGCAGCTTATCGCTGCCGAAGCAAGCTTTCTAGACCAT

BO12932.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 708 CG4665-PB 1..705 18..722 3525 100 Plus
Dhpr-RA 708 CG4665-PA 1..705 18..722 3525 100 Plus
Dhpr-RC 708 CG4665-PC 1..705 18..722 3525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-RB 880 CG4665-RB 40..745 17..722 3530 100 Plus
Dhpr-RA 1261 CG4665-RA 247..952 17..722 3530 100 Plus
Dhpr-RC 1087 CG4665-RC 247..952 17..722 3530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9134987..9135607 102..722 3105 100 Plus
3L 28110227 3L 9134806..9134890 17..101 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:31:53 has no hits.

BO12932.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:21 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 30..751 9..729 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:40 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..952 17..724 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:51 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RB 40..745 17..724 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:45 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
Dhpr-RC 247..952 17..724 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:45 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9134806..9134890 17..101 100 -> Plus
3L 9134987..9135607 102..724 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:40 Download gff for BO12932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9127906..9127990 17..101 100 -> Plus
arm_3L 9128087..9128707 102..724 99   Plus

BO12932.pep Sequence

Translation from 17 to 740

> BO12932.pep
MSAGRVVIYGGKGALGSACVDHFKANNYWVGSIDLTENEKADVSIVVPRD
ASWVEQEETVVSKVGESLAGEKLDAVICVAGGWAGGNAKKDLAKNADLMW
KQSVLTSAISAAVAAQHLKAGGLLALTGAKPALEGTPGMIGYGMAKAAVH
QLTRSLGAEKSGLPAGSLAVSILPVTLDTPMNRKWMPDADFGTWTPLTEV
AGLFLKWTQDQERPKTGSLLQLITTNGITQLIAAEASFLDH

BO12932.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dhpr-PB 235 CG4665-PB 1..235 1..235 1204 100 Plus
Dhpr-PA 235 CG4665-PA 1..235 1..235 1204 100 Plus
Dhpr-PC 235 CG4665-PC 1..235 1..235 1204 100 Plus