Clone Sequence Records
BO12935.3prime Sequence
824 bp (725 high quality bases) assembled on 2006-05-08
> BO12935.3prime
ATGGTCTAGAAAGCTTGCTAAAGACTTCATTATTAGTTCCTCCAACTGTT
TTGTATCTATTTCGGGTTGGTGGCCGCCTCCTGCCTCCGAGTTGATCCAG
TACTCGGAAACAGCAATGTACCCTGCCACTGCCGCCCCAACAATGCAACC
CCAGGCAATATGAGTAGAGCTCTGGAAGATGACACAGGTGGCCACGCACA
TTCCGAAGTAGGTGAGCATTCGCGTAAAGCTTACGTAGTTGCTGCGTTGC
TCCGCAGAAATATCATGACACTTTCCTTCCTTCAACTCATAGCCATCCGC
ACACTTCCTGCACATGTCAGGGCCATCACCATCGCATCCATCGCAAGATC
GATCACACTCCAGGCAACTAAAGGAGCCCTCATTGTTCACGCAGAACTGC
TGTGGTCGGCAAGGGTTTGGACGCTGTTGCTCCAAGCACTCATTAATGTC
GACACATCCTGCCTCCGAGTCCATGCTCCAGCCCTTCTTACACTTGCGGC
AGCTCTTGGGACCACCTCCCGTGCAGCCTCCTTCCCCACAGGCCGCATGG
CACTGTGTACACAGCAATTTCTTTTCGTCACGGAATGATTCGTAGTGCTC
CGGTCCACATTCGTTGCAGTTTGGACCCGCATAGCCGGGATCACATTTGC
ACTTTCCGTTACCCTTTCTAGTTCCGTCTCCTTTGCATTTTCCATTTCCT
TTGCACTCGGTGCAGGTCAGGCAGTCTGGTCCGTAGGTGTTCAGCGGACA
GCAGACTGTTAGCTGATCGATGCAAAGCCATGAACTGCAGGTCGGGACTC
TCTGTTTGTTTGTGGGATAACCCA
BO12935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 1125 | CG11377-RA | 358..1122 | 783..19 | 3800 | 99.8 | Minus |
CG11377-PA | 1125 | CG11377-RA | 327..358 | 815..784 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1583 | CG11377-RA | 398..1201 | 824..19 | 3950 | 99.5 | Minus |
CG11377-RB | 1221 | CG11377-RB | 398..956 | 824..264 | 2725 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 103005..103434 | 693..264 | 2150 | 100 | Minus |
2L | 23513712 | 2L | 103515..103760 | 264..19 | 1230 | 100 | Minus |
2L | 23513712 | 2L | 102785..102907 | 815..692 | 555 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:42:37 has no hits.
BO12935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:16 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 320..1125 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:08 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 320..1125 | 15..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:49:58 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 399..1205 | 14..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:42 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 399..1205 | 14..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:42 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 103516..103764 | 14..263 | 99 | | Minus |
2L | 102778..102906 | 693..823 | 96 | -> | Minus |
2L | 103006..103434 | 264..692 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:49:58 Download gff for
BO12935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 102778..102906 | 693..823 | 96 | -> | Minus |
arm_2L | 103006..103434 | 264..692 | 100 | -> | Minus |
arm_2L | 103516..103764 | 14..263 | 99 | | Minus |
BO12935.5prime Sequence
723 bp (691 high quality bases) assembled on 2006-05-08
> BO12935.5prime
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAAGCAGGA
TGTGTCGACATTAATGAGTGCTT
BO12935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 1125 | CG11377-RA | 1..707 | 17..723 | 3510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RB | 1221 | CG11377-RB | 80..786 | 17..723 | 3520 | 99.9 | Plus |
CG11377-RA | 1583 | CG11377-RA | 80..786 | 17..723 | 3520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 102459..102907 | 17..465 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 103005..103264 | 464..723 | 1285 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:48:54 has no hits.
BO12935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:17 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 1..707 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:09 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-PA | 1..707 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:34 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..786 | 17..723 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:50 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..786 | 17..723 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:50 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 102459..102906 | 17..464 | 100 | -> | Plus |
2L | 103006..103264 | 465..723 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:34 Download gff for
BO12935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 102459..102906 | 17..464 | 100 | -> | Plus |
arm_2L | 103006..103264 | 465..723 | 99 | | Plus |
BO12935.complete Sequence
1156 bp assembled on 2006-10-11
GenBank Submission: FJ632633
> BO12935.complete
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCCTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGCAGG
AAGTGTGCGGATGGCTATGAGTTGAAGGAAGGAAAGTGTCATGATATTTC
TGCGGAGCAACGCAGCAACTACGTAAGCTTTACGCGAATGCTCACCTACT
TCGGAATGTGCGTGGCCACCTGTGTCATCTTCCAGAGCTCTACTCATATT
GCCTGGGGTTGCATTGTTGGGGCGGCAGTGGCAGGGTACATTGCTGTTTC
CGAGTACTGGATCAACTCGGAGGCAGGAGGCGGCCACCAACCCGAAATAG
ATACAAAACAGTTGGAGGAACTAATAATGAAGTCTTTAGCAAGCTTTCTA
GACCAT
BO12935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1125 | CG11377-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG11377-RB | 936 | CG11377-PB | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-RA | 1583 | CG11377-RA | 80..1201 | 17..1138 | 5610 | 100 | Plus |
CG11377-RB | 1221 | CG11377-RB | 80..956 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 102459..102907 | 17..465 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 103005..103434 | 464..893 | 2150 | 100 | Plus |
2L | 23513712 | 2L | 103515..103760 | 893..1138 | 1230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:26:54 has no hits.
BO12935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:27 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 1..1125 | 17..1142 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:39 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 78..1203 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:02 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..1201 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:27 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 78..1203 | 17..1143 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:58 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11377-RA | 80..1201 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:58 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 102459..102906 | 17..464 | 100 | -> | Plus |
2L | 103006..103434 | 465..893 | 100 | -> | Plus |
2L | 103516..103760 | 894..1140 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:02 Download gff for
BO12935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 102459..102906 | 17..464 | 100 | -> | Plus |
arm_2L | 103006..103434 | 465..893 | 100 | -> | Plus |
arm_2L | 103516..103760 | 894..1140 | 99 | | Plus |
BO12935.pep Sequence
Translation from 16 to 1156
> BO12935.pep
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSLASFLDH
BO12935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11377-PA | 374 | CG11377-PA | 1..374 | 1..374 | 2119 | 100 | Plus |
CG11377-PB | 311 | CG11377-PB | 1..292 | 1..292 | 1689 | 100 | Plus |