Clone BO12935 Report

Search the DGRC for BO12935

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG11377-RA
Protein status:BO12935.pep: validated full length
Sequenced Size:1156

Clone Sequence Records

BO12935.3prime Sequence

824 bp (725 high quality bases) assembled on 2006-05-08

> BO12935.3prime
ATGGTCTAGAAAGCTTGCTAAAGACTTCATTATTAGTTCCTCCAACTGTT
TTGTATCTATTTCGGGTTGGTGGCCGCCTCCTGCCTCCGAGTTGATCCAG
TACTCGGAAACAGCAATGTACCCTGCCACTGCCGCCCCAACAATGCAACC
CCAGGCAATATGAGTAGAGCTCTGGAAGATGACACAGGTGGCCACGCACA
TTCCGAAGTAGGTGAGCATTCGCGTAAAGCTTACGTAGTTGCTGCGTTGC
TCCGCAGAAATATCATGACACTTTCCTTCCTTCAACTCATAGCCATCCGC
ACACTTCCTGCACATGTCAGGGCCATCACCATCGCATCCATCGCAAGATC
GATCACACTCCAGGCAACTAAAGGAGCCCTCATTGTTCACGCAGAACTGC
TGTGGTCGGCAAGGGTTTGGACGCTGTTGCTCCAAGCACTCATTAATGTC
GACACATCCTGCCTCCGAGTCCATGCTCCAGCCCTTCTTACACTTGCGGC
AGCTCTTGGGACCACCTCCCGTGCAGCCTCCTTCCCCACAGGCCGCATGG
CACTGTGTACACAGCAATTTCTTTTCGTCACGGAATGATTCGTAGTGCTC
CGGTCCACATTCGTTGCAGTTTGGACCCGCATAGCCGGGATCACATTTGC
ACTTTCCGTTACCCTTTCTAGTTCCGTCTCCTTTGCATTTTCCATTTCCT
TTGCACTCGGTGCAGGTCAGGCAGTCTGGTCCGTAGGTGTTCAGCGGACA
GCAGACTGTTAGCTGATCGATGCAAAGCCATGAACTGCAGGTCGGGACTC
TCTGTTTGTTTGTGGGATAACCCA

BO12935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 1125 CG11377-RA 358..1122 783..19 3800 99.8 Minus
CG11377-PA 1125 CG11377-RA 327..358 815..784 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1583 CG11377-RA 398..1201 824..19 3950 99.5 Minus
CG11377-RB 1221 CG11377-RB 398..956 824..264 2725 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 103005..103434 693..264 2150 100 Minus
2L 23513712 2L 103515..103760 264..19 1230 100 Minus
2L 23513712 2L 102785..102907 815..692 555 98.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:42:37 has no hits.

BO12935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:16 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 320..1125 15..823 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:08 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 320..1125 15..823 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:49:58 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 399..1205 14..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:42 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 399..1205 14..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:42 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 103516..103764 14..263 99   Minus
2L 102778..102906 693..823 96 -> Minus
2L 103006..103434 264..692 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:49:58 Download gff for BO12935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102778..102906 693..823 96 -> Minus
arm_2L 103006..103434 264..692 100 -> Minus
arm_2L 103516..103764 14..263 99   Minus

BO12935.5prime Sequence

723 bp (691 high quality bases) assembled on 2006-05-08

> BO12935.5prime
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAAGCAGGA
TGTGTCGACATTAATGAGTGCTT

BO12935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 1125 CG11377-RA 1..707 17..723 3510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:48:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RB 1221 CG11377-RB 80..786 17..723 3520 99.9 Plus
CG11377-RA 1583 CG11377-RA 80..786 17..723 3520 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 102459..102907 17..465 2245 100 Plus
2L 23513712 2L 103005..103264 464..723 1285 99.6 Plus
Blast to na_te.dros performed on 2015-02-11 16:48:54 has no hits.

BO12935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:17 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 1..707 17..723 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:09 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-PA 1..707 17..723 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:34 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..786 17..723 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:50 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..786 17..723 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:50 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 102459..102906 17..464 100 -> Plus
2L 103006..103264 465..723 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:34 Download gff for BO12935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102459..102906 17..464 100 -> Plus
arm_2L 103006..103264 465..723 99   Plus

BO12935.complete Sequence

1156 bp assembled on 2006-10-11

GenBank Submission: FJ632633

> BO12935.complete
GAAGTTATCAGTCGACATGAGAATCAAGTATTGTTGGCTCGCAACGCTAG
TATTCATAGCCGCTGCTTCGGCGTCATATTCTCCCGAAAAGCCTGTTCCG
CCGCCCTGCAGGGCATGTACCCAGCTTGTTAGCTCTTTCAGGGCAGGACT
CGAAAGGACAAAACGCGGACACGCGGGCGGGGACACGGCATGGGAGGAGG
AAAAGTTGCGTTCGTACAAGAACAGCGAGGTACGGCTAGTGGAGATCCAG
GAGAAGCTATGTTCGGAAGGAGAAGTGATAAACAAGGATCACTGCCACAA
CCTGGCTAACGAGCACGAGGCGCTTCTCGAGGACTGGTTTATCCACAAAC
AAACAGAGAGTCCCGACCTGCAGTCATGGCTTTGCATCGATCAGCTAACA
GTCTGCTGTCCGCTGAACACCTACGGACCAGACTGCCTGACCTGCACCGA
GTGCAATGGAAATGGAAAATGCAAAGGAGACGGAACTAGAAAGGGTAACG
GAAAGTGCAAATGTGATCCCGGCTATGCGGGTCCAAACTGCAACGAATGT
GGACCGGAGCACTACGAATCATTCCGTGACGAAAAGAAATTGCTGTGTAC
ACAGTGCCATGCGGCCTGTGGGGAAGGAGGCTGCACGGGAGGTGGTCCCA
AGAGCTGCCGCAAGTGTAAGAAGGGCTGGAGCATGGACTCGGAGGCAGGA
TGTGTCGACATTAATGAGTGCTTGGAGCAACAGCGTCCAAACCCTTGCCG
ACCACAGCAGTTCTGCGTGAACAATGAGGGCTCCTTTAGTTGCCTGGAGT
GTGATCGATCTTGCGATGGATGCGATGGTGATGGCCCTGACATGTGCAGG
AAGTGTGCGGATGGCTATGAGTTGAAGGAAGGAAAGTGTCATGATATTTC
TGCGGAGCAACGCAGCAACTACGTAAGCTTTACGCGAATGCTCACCTACT
TCGGAATGTGCGTGGCCACCTGTGTCATCTTCCAGAGCTCTACTCATATT
GCCTGGGGTTGCATTGTTGGGGCGGCAGTGGCAGGGTACATTGCTGTTTC
CGAGTACTGGATCAACTCGGAGGCAGGAGGCGGCCACCAACCCGAAATAG
ATACAAAACAGTTGGAGGAACTAATAATGAAGTCTTTAGCAAGCTTTCTA
GACCAT

BO12935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1125 CG11377-PA 1..1122 17..1138 5610 100 Plus
CG11377-RB 936 CG11377-PB 1..877 17..893 4385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-RA 1583 CG11377-RA 80..1201 17..1138 5610 100 Plus
CG11377-RB 1221 CG11377-RB 80..956 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 102459..102907 17..465 2245 100 Plus
2L 23513712 2L 103005..103434 464..893 2150 100 Plus
2L 23513712 2L 103515..103760 893..1138 1230 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:26:54 has no hits.

BO12935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:27 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 1..1125 17..1142 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:39 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 78..1203 17..1143 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:02 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..1201 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:27 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 78..1203 17..1143 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:58 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
CG11377-RA 80..1201 17..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:58 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
2L 102459..102906 17..464 100 -> Plus
2L 103006..103434 465..893 100 -> Plus
2L 103516..103760 894..1140 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:02 Download gff for BO12935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 102459..102906 17..464 100 -> Plus
arm_2L 103006..103434 465..893 100 -> Plus
arm_2L 103516..103760 894..1140 99   Plus

BO12935.pep Sequence

Translation from 16 to 1156

> BO12935.pep
MRIKYCWLATLVFIAAASASYSPEKPVPPPCRACTQLVSSFRAGLERTKR
GHAGGDTAWEEEKLRSYKNSEVRLVEIQEKLCSEGEVINKDHCHNLANEH
EALLEDWFIHKQTESPDLQSWLCIDQLTVCCPLNTYGPDCLTCTECNGNG
KCKGDGTRKGNGKCKCDPGYAGPNCNECGPEHYESFRDEKKLLCTQCHAA
CGEGGCTGGGPKSCRKCKKGWSMDSEAGCVDINECLEQQRPNPCRPQQFC
VNNEGSFSCLECDRSCDGCDGDGPDMCRKCADGYELKEGKCHDISAEQRS
NYVSFTRMLTYFGMCVATCVIFQSSTHIAWGCIVGAAVAGYIAVSEYWIN
SEAGGGHQPEIDTKQLEELIMKSLASFLDH

BO12935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11377-PA 374 CG11377-PA 1..374 1..374 2119 100 Plus
CG11377-PB 311 CG11377-PB 1..292 1..292 1689 100 Plus