Clone Sequence Records
BO12943.3prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO12943.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAGTGCCGATCTTGGCCTTGGCAG
TACCGCGCACCTTCTTCATCCTGTTGCGACGCTCCTTGCGCTGCTTGCGG
GTCTGCTTCTTCTGTTCGAAGAGGCCGTGACGGGCCAGGCGGTACTTGGG
CTCGAACTTCTTGGCGAAGTCCAGGGTGTCGTAGATGAGGGCAAAGCCGG
TGGAGCGGCCGCCACCGAAGTTGGTGCGGAATCCGAAGGCGAAGACCACA
TCGGGGGTGACCTTGTACATGGCGGCGAGCTTCTCGCGGATCTCGGTCTT
GTTCACGGACGACAATCCTGGGTGGAGGACATCGCAGACCATCTGTTTCC
TGGCGAGCAGGCGGTTGGTCATGAACTTGCGGGTGCGGATGGTAGCGGTT
GTACCGGACATGTCGACTGATAACT
BO12943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3751-PA | 396 | RpS24-RA | 1..393 | 411..19 | 1940 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..469 | 411..19 | 1950 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640703..22641095 | 19..411 | 1950 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:45:28 has no hits.
BO12943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:50:31 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:25 Download gff for
BO12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3751-PA | 1..396 | 15..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:33 Download gff for
BO12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 13..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:52 Download gff for
BO12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 13..420 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:52 Download gff for
BO12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640698..22641104 | 13..420 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:33 Download gff for
BO12943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528203..18528609 | 13..420 | 98 | | Plus |
BO12943.5prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO12943.5prime
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGGCAAGCTTTCTAGACC
BO12943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3751-PA | 396 | RpS24-RA | 1..393 | 17..409 | 1940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..469 | 17..409 | 1950 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640703..22641095 | 409..17 | 1950 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:12:01 has no hits.
BO12943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:50:32 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:26 Download gff for
BO12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3751-PA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:03 Download gff for
BO12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 8..415 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:34 Download gff for
BO12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 68..474 | 8..415 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:34 Download gff for
BO12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640698..22641104 | 8..415 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:03 Download gff for
BO12943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528203..18528609 | 8..415 | 98 | | Minus |
BO12943.complete Sequence
427 bp assembled on 2007-06-22
GenBank Submission: FJ632634
> BO12943.complete
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGGCAAGCTTTCTAGACCAT
BO12943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 396 | CG3751-PA | 1..393 | 17..409 | 1950 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-RA | 646 | CG3751-RA | 77..469 | 17..409 | 1950 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22640703..22641095 | 409..17 | 1950 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:55:08 has no hits.
BO12943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:07 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 1..396 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:50 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 67..473 | 8..415 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:32 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 77..469 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:07 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 67..473 | 8..415 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:02 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS24-RA | 77..469 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:02 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22640701..22641095 | 17..411 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:32 Download gff for
BO12943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18528206..18528600 | 17..411 | 99 | | Minus |
BO12943.pep Sequence
Translation from 16 to 427
> BO12943.pep
MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYK
VTPDVVFAFGFRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQ
KKQTRKQRKERRNRMKKVRGTAKAKIGTGKKASFLDH
BO12943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS24-PA | 131 | CG3751-PA | 1..131 | 1..131 | 671 | 100 | Plus |