Clone BO12943 Report

Search the DGRC for BO12943

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptRpS24-RA
Protein status:BO12943.pep:
Sequenced Size:427

Clone Sequence Records

BO12943.3prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO12943.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAGTGCCGATCTTGGCCTTGGCAG
TACCGCGCACCTTCTTCATCCTGTTGCGACGCTCCTTGCGCTGCTTGCGG
GTCTGCTTCTTCTGTTCGAAGAGGCCGTGACGGGCCAGGCGGTACTTGGG
CTCGAACTTCTTGGCGAAGTCCAGGGTGTCGTAGATGAGGGCAAAGCCGG
TGGAGCGGCCGCCACCGAAGTTGGTGCGGAATCCGAAGGCGAAGACCACA
TCGGGGGTGACCTTGTACATGGCGGCGAGCTTCTCGCGGATCTCGGTCTT
GTTCACGGACGACAATCCTGGGTGGAGGACATCGCAGACCATCTGTTTCC
TGGCGAGCAGGCGGTTGGTCATGAACTTGCGGGTGCGGATGGTAGCGGTT
GTACCGGACATGTCGACTGATAACT

BO12943.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3751-PA 396 RpS24-RA 1..393 411..19 1940 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..469 411..19 1950 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640703..22641095 19..411 1950 99.7 Plus
Blast to na_te.dros performed on 2015-02-12 17:45:28 has no hits.

BO12943.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:50:31 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:25 Download gff for BO12943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3751-PA 1..396 15..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:33 Download gff for BO12943.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 13..420 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:52 Download gff for BO12943.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 13..420 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:52 Download gff for BO12943.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22640698..22641104 13..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:33 Download gff for BO12943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528203..18528609 13..420 98   Plus

BO12943.5prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO12943.5prime
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGGCAAGCTTTCTAGACC

BO12943.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3751-PA 396 RpS24-RA 1..393 17..409 1940 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..469 17..409 1950 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640703..22641095 409..17 1950 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 11:12:01 has no hits.

BO12943.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:50:32 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:26 Download gff for BO12943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3751-PA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:03 Download gff for BO12943.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 8..415 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:34 Download gff for BO12943.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 68..474 8..415 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:34 Download gff for BO12943.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22640698..22641104 8..415 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:03 Download gff for BO12943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528203..18528609 8..415 98   Minus

BO12943.complete Sequence

427 bp assembled on 2007-06-22

GenBank Submission: FJ632634

> BO12943.complete
GAAGTTATCAGTCGACATGTCCGGTACAACCGCTACCATCCGCACCCGCA
AGTTCATGACCAACCGCCTGCTCGCCAGGAAACAGATGGTCTGCGATGTC
CTCCACCCAGGATTGTCGTCCGTGAACAAGACCGAGATCCGCGAGAAGCT
CGCCGCCATGTACAAGGTCACCCCCGATGTGGTCTTCGCCTTCGGATTCC
GCACCAACTTCGGTGGCGGCCGCTCCACCGGCTTTGCCCTCATCTACGAC
ACCCTGGACTTCGCCAAGAAGTTCGAGCCCAAGTACCGCCTGGCCCGTCA
CGGCCTCTTCGAACAGAAGAAGCAGACCCGCAAGCAGCGCAAGGAGCGTC
GCAACAGGATGAAGAAGGTGCGCGGTACTGCCAAGGCCAAGATCGGCACT
GGCAAGAAGGCAAGCTTTCTAGACCAT

BO12943.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:09
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 396 CG3751-PA 1..393 17..409 1950 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-RA 646 CG3751-RA 77..469 17..409 1950 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22640703..22641095 409..17 1950 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 13:55:08 has no hits.

BO12943.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:07 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 1..396 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:50 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 67..473 8..415 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:32 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 77..469 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:07 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 67..473 8..415 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:02 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
RpS24-RA 77..469 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:02 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22640701..22641095 17..411 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:32 Download gff for BO12943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18528206..18528600 17..411 99   Minus

BO12943.pep Sequence

Translation from 16 to 427

> BO12943.pep
MSGTTATIRTRKFMTNRLLARKQMVCDVLHPGLSSVNKTEIREKLAAMYK
VTPDVVFAFGFRTNFGGGRSTGFALIYDTLDFAKKFEPKYRLARHGLFEQ
KKQTRKQRKERRNRMKKVRGTAKAKIGTGKKASFLDH

BO12943.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS24-PA 131 CG3751-PA 1..131 1..131 671 100 Plus