Clone BO12945 Report

Search the DGRC for BO12945

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG12920-RA
Protein status:BO12945.pep: validated full length
Sequenced Size:1150

Clone Sequence Records

BO12945.3prime Sequence

780 bp (722 high quality bases) assembled on 2006-05-08

> BO12945.3prime
ATGGTCTAGAAAGCTTGCCTGCATCAGGATGTGCTCGGCAATGGAGCTGA
GCTTGCGATTCTTGTGCTTGGCTCGTCGCCTTTCGGCTTGGAGGTTGATC
TCATTCTGGGAATCCTCAGCGGCAGATTCCTCGGTGACTGCCTGCTCCTC
CTGTTGCTGATCAGCCTCCTGGTGTGCCTCCGACTCCGGATTTTCCTCGC
CGTTGTCGTTCTCCACGAAAATGCACTCGGGATTGACGGCAGCACACTCG
CCAAAGCTGGTGGCCCTGGCCATAGGATTTCTGGCATTGGTGTACTTCTC
AAAGAAACCGCGACCCACAATGCGGAAAGCCATGCTGGTCAAGGGATTCA
ACTTGGATCTAAACTCCATTTCGCAGACAAATCGGCGTCGGCACGCCTTT
GAGTCCAGGCCCAAAAAGGCGAACATAAAATCGGCAATCTGCTCTTCGGC
GGGCATTTGGCGAGCCACGCTCTCTGAAATTTCCTCATCCACAATCTCCA
CATGCTCTTCCTCCTGCTCATCTTGGATCAAATGGGCGTTATCTGCAGCG
CTACGGCGTCCGCGACGGCGCGTGTCTACGGGACCAGATGGGCCACTTGG
TCCAGAGGGAGATTCGCTATGGTAGTCGCCATGCACATCAGAGACAATGT
CCGATCCAGCATAGCTGCTGTATCCGGAATAGGGCTCGAAACTGGCGCCG
GAGTCAAAAGATGAAGGAGCATCATATTGCTCCAAGTGATCGTGGTCCAG
AGAGTAGGGAATGTGATCGTGATGAGAGAA

BO12945.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 1119 CG12920-RA 355..1116 780..19 3760 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 439..1200 780..19 3780 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070540..10070960 439..19 2105 100 Minus
2R 25286936 2R 10070139..10070480 780..439 1680 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 17:45:11 has no hits.

BO12945.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:35 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 357..1119 18..778 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:31 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 357..1119 18..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:31 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 439..1200 19..780 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:47 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 439..1200 19..780 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:47 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10070139..10070479 440..780 99 -> Minus
2R 10070540..10070960 19..439 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:31 Download gff for BO12945.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5957644..5957984 440..780 99 -> Minus
arm_2R 5958045..5958465 19..439 100   Minus

BO12945.5prime Sequence

815 bp (701 high quality bases) assembled on 2006-05-08

> BO12945.5prime
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCCAAATGGAGTTTAAATCCAAGT
TGAATCCCTTGACCA

BO12945.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 1119 CG12920-RA 1..799 17..815 3945 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 84..883 16..815 3970 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070129..10070480 361..712 1760 100 Plus
2R 25286936 2R 10069189..10069385 16..212 985 100 Plus
2R 25286936 2R 10069920..10070067 213..360 740 100 Plus
2R 25286936 2R 10070540..10070643 712..815 490 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 11:11:54 has no hits.

BO12945.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:36 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:33 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:02 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 80..882 9..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:33 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 80..882 9..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:33 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10070540..10070642 712..814 98   Plus
2R 10069186..10069385 14..212 99 -> Plus
2R 10069920..10070067 213..360 100 -> Plus
2R 10070129..10070479 361..711 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:02 Download gff for BO12945.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5958045..5958147 712..814 98   Plus
arm_2R 5956691..5956890 14..212 99 -> Plus
arm_2R 5957425..5957572 213..360 100 -> Plus
arm_2R 5957634..5957984 361..711 100 -> Plus

BO12945.complete Sequence

1150 bp assembled on 2006-10-11

GenBank Submission: FJ632635

> BO12945.complete
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCGAAATGGAGTTTAGATCCAAGT
TGAATCCCTTGACCAGCATGGCTTTCCGCATTGTGGGTCGCGGTTTCTTT
GAGAAGTACACCAATGCCAGAAATCCTATGGCCAGGGCCACCAGCTTTGG
CGAGTGTGCTGCCGTCAATCCCGAGTGCATTTTCGTGGAGAACGACAACG
GCGAGGAAAATCCGGAGTCGGAGGCACACCAGGAGGCTGATCAGCAACAG
GAGGAGCAGGCAGTCACCGAGGAATCTGCCGCTGAGGATTCCCAGAATGA
GATCAACCTCCAAGCCGAAAGGCGACGAGCCAAGCACAAGAATCGCAAGC
TCAGCTCCATTGCCGAGCACATCCTGATGCAGGCAAGCTTTCTAGACCAT

BO12945.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1119 CG12920-PA 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-RA 1307 CG12920-RA 84..1200 16..1132 5585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10070540..10070960 712..1132 2105 100 Plus
2R 25286936 2R 10070129..10070480 361..712 1760 100 Plus
2R 25286936 2R 10069189..10069385 16..212 985 100 Plus
2R 25286936 2R 10069920..10070067 213..360 740 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:59:59 has no hits.

BO12945.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:28 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 1..1119 17..1133 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:40 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 82..1197 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:23 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 85..1200 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:28 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 77..1197 9..1132 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:44 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
CG12920-RA 85..1200 17..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:44 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10069190..10069385 17..212 100 -> Plus
2R 10069920..10070067 213..360 100 -> Plus
2R 10070129..10070479 361..711 100 -> Plus
2R 10070540..10070960 712..1134 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:23 Download gff for BO12945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5956695..5956890 17..212 100 -> Plus
arm_2R 5957425..5957572 213..360 100 -> Plus
arm_2R 5957634..5957984 361..711 100 -> Plus
arm_2R 5958045..5958465 712..1134 99   Plus

BO12945.pep Sequence

Translation from 16 to 1150

> BO12945.pep
MHKNTIWYGAVLLVVYFTLVFCEETKNEEAPAQLDNQVEDTWENLGRELM
EFEGRTRRHRHHMFWYRHLWPIAIAYWIKVKVVIVSFFVGSAIYLGLRYF
WPHARCNQEIILDHPPSSFSHHDHIPYSLDHDHSEHYDAPSSFDSGASFE
PYSGYSSYAGSDIVSDVHGDYHSESPSGPSGPSGPVDTRRRGRRSAADNA
HLIQDEQEEEHVEIVDEEISESVARQMPAEEQIADFMFAFLGLDSKACRR
RFVCEMEFRSKLNPLTSMAFRIVGRGFFEKYTNARNPMARATSFGECAAV
NPECIFVENDNGEENPESEAHQEADQQQEEQAVTEESAAEDSQNEINLQA
ERRRAKHKNRKLSSIAEHILMQASFLDH

BO12945.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12920-PA 372 CG12920-PA 1..372 1..372 1990 100 Plus