Clone Sequence Records
BO12945.3prime Sequence
780 bp (722 high quality bases) assembled on 2006-05-08
> BO12945.3prime
ATGGTCTAGAAAGCTTGCCTGCATCAGGATGTGCTCGGCAATGGAGCTGA
GCTTGCGATTCTTGTGCTTGGCTCGTCGCCTTTCGGCTTGGAGGTTGATC
TCATTCTGGGAATCCTCAGCGGCAGATTCCTCGGTGACTGCCTGCTCCTC
CTGTTGCTGATCAGCCTCCTGGTGTGCCTCCGACTCCGGATTTTCCTCGC
CGTTGTCGTTCTCCACGAAAATGCACTCGGGATTGACGGCAGCACACTCG
CCAAAGCTGGTGGCCCTGGCCATAGGATTTCTGGCATTGGTGTACTTCTC
AAAGAAACCGCGACCCACAATGCGGAAAGCCATGCTGGTCAAGGGATTCA
ACTTGGATCTAAACTCCATTTCGCAGACAAATCGGCGTCGGCACGCCTTT
GAGTCCAGGCCCAAAAAGGCGAACATAAAATCGGCAATCTGCTCTTCGGC
GGGCATTTGGCGAGCCACGCTCTCTGAAATTTCCTCATCCACAATCTCCA
CATGCTCTTCCTCCTGCTCATCTTGGATCAAATGGGCGTTATCTGCAGCG
CTACGGCGTCCGCGACGGCGCGTGTCTACGGGACCAGATGGGCCACTTGG
TCCAGAGGGAGATTCGCTATGGTAGTCGCCATGCACATCAGAGACAATGT
CCGATCCAGCATAGCTGCTGTATCCGGAATAGGGCTCGAAACTGGCGCCG
GAGTCAAAAGATGAAGGAGCATCATATTGCTCCAAGTGATCGTGGTCCAG
AGAGTAGGGAATGTGATCGTGATGAGAGAA
BO12945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 1119 | CG12920-RA | 355..1116 | 780..19 | 3760 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 439..1200 | 780..19 | 3780 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070540..10070960 | 439..19 | 2105 | 100 | Minus |
2R | 25286936 | 2R | 10070139..10070480 | 780..439 | 1680 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:11 has no hits.
BO12945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:35 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 357..1119 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:31 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 357..1119 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:31 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 439..1200 | 19..780 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:47 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 439..1200 | 19..780 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:47 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10070139..10070479 | 440..780 | 99 | -> | Minus |
2R | 10070540..10070960 | 19..439 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:31 Download gff for
BO12945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5957644..5957984 | 440..780 | 99 | -> | Minus |
arm_2R | 5958045..5958465 | 19..439 | 100 | | Minus |
BO12945.5prime Sequence
815 bp (701 high quality bases) assembled on 2006-05-08
> BO12945.5prime
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCCAAATGGAGTTTAAATCCAAGT
TGAATCCCTTGACCA
BO12945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 1119 | CG12920-RA | 1..799 | 17..815 | 3945 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 84..883 | 16..815 | 3970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070129..10070480 | 361..712 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 10069189..10069385 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 10069920..10070067 | 213..360 | 740 | 100 | Plus |
2R | 25286936 | 2R | 10070540..10070643 | 712..815 | 490 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:11:54 has no hits.
BO12945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:50:36 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:31:33 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:20:02 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 80..882 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:33 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 80..882 | 9..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:33 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10070540..10070642 | 712..814 | 98 | | Plus |
2R | 10069186..10069385 | 14..212 | 99 | -> | Plus |
2R | 10069920..10070067 | 213..360 | 100 | -> | Plus |
2R | 10070129..10070479 | 361..711 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:20:02 Download gff for
BO12945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5958045..5958147 | 712..814 | 98 | | Plus |
arm_2R | 5956691..5956890 | 14..212 | 99 | -> | Plus |
arm_2R | 5957425..5957572 | 213..360 | 100 | -> | Plus |
arm_2R | 5957634..5957984 | 361..711 | 100 | -> | Plus |
BO12945.complete Sequence
1150 bp assembled on 2006-10-11
GenBank Submission: FJ632635
> BO12945.complete
GAAGTTATCAGTCGACATGCACAAGAACACCATTTGGTACGGAGCTGTGC
TCCTTGTCGTCTACTTCACGCTGGTGTTTTGCGAGGAGACGAAGAACGAG
GAGGCTCCGGCGCAATTGGATAACCAAGTGGAGGACACATGGGAAAATCT
CGGCCGGGAGCTAATGGAGTTTGAGGGACGTACTCGACGCCATCGTCACC
ACATGTTCTGGTATCGTCACCTATGGCCCATTGCCATTGCTTACTGGATC
AAGGTGAAAGTGGTGATCGTATCCTTCTTTGTGGGCAGTGCCATCTACTT
GGGTCTGCGCTATTTCTGGCCCCATGCCAGGTGCAACCAGGAGATCATCC
TTGATCATCCTCCTTCGTCTTTCTCTCATCACGATCACATTCCCTACTCT
CTGGACCACGATCACTCGGAGCACTATGATGCTCCTTCATCTTTTGACTC
CGGCGCCAGTTTCGAGCCCTATTCCGGATACAGCAGCTATGCTGGATCGG
ACATTGTCTCTGATGTGCATGGCGACTACCATAGCGAATCTCCCTCTGGA
CCAAGTGGCCCATCTGGTCCCGTAGACACGCGCCGTCGCGGACGCCGTAG
CGCTGCAGATAACGCCCATTTGATCCAAGATGAGCAGGAGGAAGAGCATG
TGGAGATTGTGGATGAGGAAATTTCAGAGAGCGTGGCTCGCCAAATGCCC
GCCGAAGAGCAGATTGCCGATTTTATGTTCGCCTTTTTGGGCCTGGACTC
AAAGGCGTGCCGACGCCGATTTGTCTGCGAAATGGAGTTTAGATCCAAGT
TGAATCCCTTGACCAGCATGGCTTTCCGCATTGTGGGTCGCGGTTTCTTT
GAGAAGTACACCAATGCCAGAAATCCTATGGCCAGGGCCACCAGCTTTGG
CGAGTGTGCTGCCGTCAATCCCGAGTGCATTTTCGTGGAGAACGACAACG
GCGAGGAAAATCCGGAGTCGGAGGCACACCAGGAGGCTGATCAGCAACAG
GAGGAGCAGGCAGTCACCGAGGAATCTGCCGCTGAGGATTCCCAGAATGA
GATCAACCTCCAAGCCGAAAGGCGACGAGCCAAGCACAAGAATCGCAAGC
TCAGCTCCATTGCCGAGCACATCCTGATGCAGGCAAGCTTTCTAGACCAT
BO12945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1119 | CG12920-PA | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-RA | 1307 | CG12920-RA | 84..1200 | 16..1132 | 5585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10070540..10070960 | 712..1132 | 2105 | 100 | Plus |
2R | 25286936 | 2R | 10070129..10070480 | 361..712 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 10069189..10069385 | 16..212 | 985 | 100 | Plus |
2R | 25286936 | 2R | 10069920..10070067 | 213..360 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:59:59 has no hits.
BO12945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:28 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 1..1119 | 17..1133 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:47:40 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 82..1197 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:23 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 85..1200 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:28 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 77..1197 | 9..1132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:44 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12920-RA | 85..1200 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:44 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10069190..10069385 | 17..212 | 100 | -> | Plus |
2R | 10069920..10070067 | 213..360 | 100 | -> | Plus |
2R | 10070129..10070479 | 361..711 | 100 | -> | Plus |
2R | 10070540..10070960 | 712..1134 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:23 Download gff for
BO12945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5956695..5956890 | 17..212 | 100 | -> | Plus |
arm_2R | 5957425..5957572 | 213..360 | 100 | -> | Plus |
arm_2R | 5957634..5957984 | 361..711 | 100 | -> | Plus |
arm_2R | 5958045..5958465 | 712..1134 | 99 | | Plus |
BO12945.pep Sequence
Translation from 16 to 1150
> BO12945.pep
MHKNTIWYGAVLLVVYFTLVFCEETKNEEAPAQLDNQVEDTWENLGRELM
EFEGRTRRHRHHMFWYRHLWPIAIAYWIKVKVVIVSFFVGSAIYLGLRYF
WPHARCNQEIILDHPPSSFSHHDHIPYSLDHDHSEHYDAPSSFDSGASFE
PYSGYSSYAGSDIVSDVHGDYHSESPSGPSGPSGPVDTRRRGRRSAADNA
HLIQDEQEEEHVEIVDEEISESVARQMPAEEQIADFMFAFLGLDSKACRR
RFVCEMEFRSKLNPLTSMAFRIVGRGFFEKYTNARNPMARATSFGECAAV
NPECIFVENDNGEENPESEAHQEADQQQEEQAVTEESAAEDSQNEINLQA
ERRRAKHKNRKLSSIAEHILMQASFLDH
BO12945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12920-PA | 372 | CG12920-PA | 1..372 | 1..372 | 1990 | 100 | Plus |