Clone Sequence Records
BO12960.3prime Sequence
715 bp (712 high quality bases) assembled on 2006-05-08
> BO12960.3prime
ATGGTCTAGAAAGCTTGCAAGCTTTGTATGTTTGACCGTATCCGTCCAGT
AGTTCTGTATTGTCATCGCCTCCAGCGAATTGAGAAACGAGTCGTTGTCC
AGGCTGTACATCTCATCCGAATTGTCACTCACCCGCATCGTGCTATCATC
GATATAGACACTCGAGTCTGGTTCGCTGAGCGCTTGCGGTTTGTTCAGAT
ACCGACGACGGTACAGTACGATCCCAATGGTGCCCACTGTGCAGCAGACG
CCGAAGACAGTGAAGCAAATCGCCGAAATGGCACCCGCATCCAGGAAGTA
CGTTCGCTGAATGGCCAGTGCCTCGGATGAGATATTGCCCTCGTCGCCGA
CGCCTCCGTCGTAGAACCCGGATCCGGCCACGCCCCCCGCCACGCTGGGC
GCCGCGGAGGCGGATCTGGTCAGAAGACTCTTGGTGTCGCCGGAGAAGTT
GATGTAGCGATTGATGTGCTTATACTCCGCGGATAGAACCTTCGATTTTC
GCGATCTATGCTCGCTTTCGGCACGCCTAAGTTCATCCTCCTTGTTGGCA
TTTTCCAGGGTGAACGGCGCCTTTTCGCCCTCGACCGTGACCGCTGACCC
CAGGCCACCAGTCGCACCCGCCAGCAGCTCATCGGATAGCCATTCCGTGT
GGATCTTTGGCGTGGACGGCGTAGCCGCGGAACCAGCCGGCGTGGAAGTG
GATGCACTGCCTCCG
BO12960.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-PA | 1395 | CG12991-RA | 696..1392 | 715..19 | 3460 | 99.8 | Minus |
CG12991-PB | 1395 | CG12991-RB | 696..1392 | 715..19 | 3460 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-RF | 2611 | CG12991-RF | 976..1672 | 715..19 | 3470 | 99.9 | Minus |
CG12991-RC | 2707 | CG12991-RC | 1072..1768 | 715..19 | 3470 | 99.9 | Minus |
CG12991-RB | 2255 | CG12991-RB | 979..1675 | 715..19 | 3470 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17597518..17597926 | 715..307 | 2045 | 100 | Minus |
X | 23542271 | X | 17598008..17598191 | 309..126 | 905 | 99.5 | Minus |
X | 23542271 | X | 17598268..17598375 | 126..19 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:21:20 has no hits.
BO12960.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:02 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-PA | 696..1395 | 15..715 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:09 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-PB | 696..1395 | 15..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:25 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RB | 979..1681 | 12..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:12 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RB | 979..1681 | 12..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:12 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17597518..17597926 | 307..715 | 100 | -> | Minus |
X | 17598011..17598190 | 127..306 | 99 | -> | Minus |
X | 17598268..17598381 | 12..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:25 Download gff for
BO12960.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17491551..17491959 | 307..715 | 100 | -> | Minus |
arm_X | 17492044..17492223 | 127..306 | 99 | -> | Minus |
arm_X | 17492301..17492414 | 12..126 | 97 | | Minus |
BO12960.5prime Sequence
775 bp (676 high quality bases) assembled on 2006-05-08
> BO12960.5prime
GAAGTTATCAGTCGACATGACTTTCTACTGGTGGTCACACTGGTTCTGGA
TAACCCTGATCCTGAGTGTTAACTTGCTGTCCAGCCATGTCCACACATAT
CCCAGCCAGGAGGCGGAGTCACTGACCTCCAGCCCGCATACCCAATCCCA
AACGCAGCCCGTGCGCACCACCAAGCTCTACCAAACGACGGTCACCCAGA
TGTGGGGCCCAGCCACCCAGAGCAACATCATGGACCTGACCCACCGACCC
ACCACCACACGGCCGGTGGTAACCCCCAGTTATGGTGGTGGCCCCCAATT
GGCCCAGGTCCATGATGTTGAACAGGCAGTGGAGCTGCAGGAGGAGGATG
AGGTGGTGGAGGAGGAGGAGCTGCCGCTCAACGATCGTGACCAGCAGGAG
CAGGATGAGATTCCCGATCAAGAGCGCCGGCAGGATGAGGCAGATGCAGA
TCCAGATGCGGATGCGGATATCGAGGACGCTGTAGCAAACGAGGAGCTGG
CTCAATTCGAGTTCAAGCGATCGGCGGACTTCACCTCCGACCAGCTGAAT
AACTTTACGAATTTTAGCAGTAGCACTAGTACAAATGGCAGCAGCAGCAG
TAGCACCACCACAAAACCAGTTGCAATCAGCAGCAGTAGTCCGGCCAGCA
CAACAACCACCACCGCGAAAGTGTTGGCAACATCGCCGGCAGCTGCAATA
ACACCACGGGCCGGAGGCAGTGCATCCACTTCCCCGCCGGCTGGTTCCGC
GGCTACCGCCGTCCACGCCCAAGAT
BO12960.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-PA | 1395 | CG12991-RA | 1..740 | 17..756 | 3675 | 99.8 | Plus |
CG12991-PB | 1395 | CG12991-RB | 1..740 | 17..756 | 3675 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-RF | 2611 | CG12991-RF | 280..1038 | 16..775 | 3745 | 99.6 | Plus |
CG12991-RE | 2734 | CG12991-RE | 388..1146 | 16..775 | 3745 | 99.6 | Plus |
CG12991-RD | 2713 | CG12991-RD | 388..1146 | 16..775 | 3745 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17596809..17597320 | 68..579 | 2560 | 100 | Plus |
X | 23542271 | X | 17597384..17597580 | 578..775 | 910 | 98.5 | Plus |
X | 23542271 | X | 17596699..17596755 | 16..72 | 270 | 98.2 | Plus |
Blast to na_te.dros performed 2015-02-10 00:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2465 | 566..716 | 178 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6928 | 566..710 | 169 | 61.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6897 | 566..706 | 166 | 63 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1056..1166 | 563..669 | 166 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1074..1146 | 566..638 | 157 | 71.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6825..6927 | 566..668 | 136 | 61.5 | Plus |
412 | 7567 | 412 412 7567bp | 1569..1604 | 36..71 | 108 | 77.8 | Plus |
BO12960.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:03 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-PA | 1..758 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:10 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-PB | 1..758 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:27 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RD | 388..1146 | 16..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:34 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RD | 388..1146 | 16..775 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:34 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17596699..17596751 | 16..68 | 100 | -> | Plus |
X | 17596810..17597320 | 69..579 | 100 | -> | Plus |
X | 17597386..17597580 | 580..775 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:27 Download gff for
BO12960.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17490732..17490784 | 16..68 | 100 | -> | Plus |
arm_X | 17490843..17491353 | 69..579 | 100 | -> | Plus |
arm_X | 17491419..17491613 | 580..775 | 98 | | Plus |
BO12960.complete Sequence
1426 bp assembled on 2007-06-22
GenBank Submission: FJ632636
> BO12960.complete
GAAGTTATCAGTCGACATGACTTTCTACTGGTGGTCACACTGGTTCTGGA
TAACCCTGATCCTGAGTGTTAACTTGCTGTCCAGCCATGTCCACACATAT
CCCAGCCAGGAGGCGGAGTCACTGACCTCCAGCCCGCATACCCAATCCCA
AACGCAGCCCGTGCGCACCACCAAGCTCTACCAAACGACGGTCACCCAGA
TGTGGGGCCCAGCCACCCAGAGCAACATCATGGACCTGACCCACCGACCC
ACCACCACACGGCCGGTGGTAACCCCCAGTTATGGTGGTGGCCCCCAATT
GGCCCAGGTCCATGATGTTGAACAGGCAGTGGAGCTGCAGGAGGAGGATG
AGGTGGTGGAGGAGGAGGAGCTGCCGCTCAACGATCGTGACCAGCAGGAG
CAGGATGAGATTCCCGATCAAGAGCGCCGGCAGGATGAGGCAGATGCAGA
TCCAGATGCGGATGCGGATATCGAGGACGCTGTAGCAAACGAGGAGCTGG
CTCAATTCGAGTTCAAGCGATCGGCGGACTTCACCTCCGACCAGCTGAAT
AACTTTACGAATTTTAGCAGTAGCACTAGTACAAATGGCAGCAGCAGCAG
TAGCACCACCACAAAACCAGTTGCAATCAGCAGCAGTAGTCCGGCCAGCA
CAACAACCACCACCGCGAAAGTGTTGGCAACATCGCCGGCAGCTGCAATA
ACACCACGGGCCGGAGGCAGTGCATCCACTTCCACGCCGGCTGGTTCCGC
GGCTACGCCGTCCACGCCAAAGATCCACACGGAATGGCTATCCGATGAGC
TGCTGGCGGGTGCGACTGGTGGCCTGGGGTCAGCGGTCACGGTCGAGGGC
GAAAAGGCGCCGTTCACCCTGGAAAATGCCAACAAGGAGGATGAACTTAG
GCGTGCCGAAAGCGAGCATAGATCGCGAAAATCGAAGGTTCTATCCGCGG
AGTATAAGCACATCAATCGCTACATCAACTTCTCCGGCGACACCAAGAGT
CTTCTGACCAGATCCGCCTCCGCGGCGCCCAGCGTGGCGGGGGGCGTGGC
CGGATCCGGGTTCTACGACGGAGGCGTCGGCGACGAGGGCAATATCTCAT
CCGAGGCACTGGCCATTCAGCGAACGTACTTCCTGGATGCGGGTGCCATT
TCGGCGATTTGCTTCACTGTCTTCGGCGTCTGCTGCACAGTGGGCACCAT
TGGGATCGTACTGTACCGTCGTCGGTATCTGAACAAACCGCAAGCGCTCA
GCGAACCAGACTCGAGTGTCTATATCGATGATAGCACGATGCGGGTGAGT
GACAATTCGGATGAGATGTACAGCCTGGACAACGACTCGTTTCTCAATTC
GCTGGAGGCGATGACAATACAGAACTACTGGACGGATACGGTCAAACATA
CAAAGCTTGCAAGCTTTCTAGACCAT
BO12960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-RF | 1395 | CG12991-PF | 1..1392 | 17..1408 | 6945 | 99.9 | Plus |
CG12991-RB | 1395 | CG12991-PB | 1..1392 | 17..1408 | 6945 | 99.9 | Plus |
CG12991-RA | 1395 | CG12991-PA | 1..1392 | 17..1408 | 6945 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-RF | 2611 | CG12991-RF | 280..1672 | 16..1408 | 6950 | 99.9 | Plus |
CG12991-RB | 2255 | CG12991-RB | 283..1675 | 16..1408 | 6950 | 99.9 | Plus |
CG12991-RA | 2360 | CG12991-RA | 388..1780 | 16..1408 | 6950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17597384..17597926 | 578..1120 | 2715 | 100 | Plus |
X | 23542271 | X | 17596809..17597320 | 68..579 | 2560 | 100 | Plus |
X | 23542271 | X | 17598008..17598191 | 1118..1301 | 905 | 99.5 | Plus |
X | 23542271 | X | 17598268..17598375 | 1301..1408 | 540 | 100 | Plus |
X | 23542271 | X | 17596699..17596755 | 16..72 | 270 | 98.2 | Plus |
Blast to na_te.dros performed 2014-11-27 14:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2465 | 566..716 | 178 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1056..1166 | 563..669 | 166 | 64.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1074..1146 | 566..638 | 157 | 71.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6825..6927 | 566..668 | 136 | 61.5 | Plus |
BO12960.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:10 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RB | 1..1395 | 17..1412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:43 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RB | 283..1681 | 16..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:00 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RA | 389..1780 | 17..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:10 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RB | 283..1681 | 16..1415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12991-RA | 389..1780 | 17..1410 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:01 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17598011..17598190 | 1121..1300 | 99 | -> | Plus |
X | 17598268..17598375 | 1301..1410 | 98 | | Plus |
X | 17596700..17596751 | 17..68 | 100 | -> | Plus |
X | 17596810..17597320 | 69..579 | 100 | -> | Plus |
X | 17597386..17597926 | 580..1120 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:00 Download gff for
BO12960.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17490733..17490784 | 17..68 | 100 | -> | Plus |
arm_X | 17490843..17491353 | 69..579 | 100 | -> | Plus |
arm_X | 17491419..17491959 | 580..1120 | 100 | -> | Plus |
arm_X | 17492044..17492223 | 1121..1300 | 99 | -> | Plus |
arm_X | 17492301..17492408 | 1301..1410 | 98 | | Plus |
BO12960.pep Sequence
Translation from 16 to 1426
> BO12960.pep
MTFYWWSHWFWITLILSVNLLSSHVHTYPSQEAESLTSSPHTQSQTQPVR
TTKLYQTTVTQMWGPATQSNIMDLTHRPTTTRPVVTPSYGGGPQLAQVHD
VEQAVELQEEDEVVEEEELPLNDRDQQEQDEIPDQERRQDEADADPDADA
DIEDAVANEELAQFEFKRSADFTSDQLNNFTNFSSSTSTNGSSSSSTTTK
PVAISSSSPASTTTTTAKVLATSPAAAITPRAGGSASTSTPAGSAATPST
PKIHTEWLSDELLAGATGGLGSAVTVEGEKAPFTLENANKEDELRRAESE
HRSRKSKVLSAEYKHINRYINFSGDTKSLLTRSASAAPSVAGGVAGSGFY
DGGVGDEGNISSEALAIQRTYFLDAGAISAICFTVFGVCCTVGTIGIVLY
RRRYLNKPQALSEPDSSVYIDDSTMRVSDNSDEMYSLDNDSFLNSLEAMT
IQNYWTDTVKHTKLASFLDH
BO12960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12991-PF | 464 | CG12991-PF | 1..464 | 1..464 | 2385 | 100 | Plus |
CG12991-PB | 464 | CG12991-PB | 1..464 | 1..464 | 2385 | 100 | Plus |
CG12991-PA | 464 | CG12991-PA | 1..464 | 1..464 | 2385 | 100 | Plus |
CG12991-PE | 469 | CG12991-PE | 1..469 | 1..464 | 2364 | 98.7 | Plus |
CG12991-PD | 462 | CG12991-PD | 1..462 | 1..464 | 2364 | 99.6 | Plus |