Clone BO12960 Report

Search the DGRC for BO12960

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG12991-RA
Protein status:BO12960.pep: validated full length
Sequenced Size:1426

Clone Sequence Records

BO12960.3prime Sequence

715 bp (712 high quality bases) assembled on 2006-05-08

> BO12960.3prime
ATGGTCTAGAAAGCTTGCAAGCTTTGTATGTTTGACCGTATCCGTCCAGT
AGTTCTGTATTGTCATCGCCTCCAGCGAATTGAGAAACGAGTCGTTGTCC
AGGCTGTACATCTCATCCGAATTGTCACTCACCCGCATCGTGCTATCATC
GATATAGACACTCGAGTCTGGTTCGCTGAGCGCTTGCGGTTTGTTCAGAT
ACCGACGACGGTACAGTACGATCCCAATGGTGCCCACTGTGCAGCAGACG
CCGAAGACAGTGAAGCAAATCGCCGAAATGGCACCCGCATCCAGGAAGTA
CGTTCGCTGAATGGCCAGTGCCTCGGATGAGATATTGCCCTCGTCGCCGA
CGCCTCCGTCGTAGAACCCGGATCCGGCCACGCCCCCCGCCACGCTGGGC
GCCGCGGAGGCGGATCTGGTCAGAAGACTCTTGGTGTCGCCGGAGAAGTT
GATGTAGCGATTGATGTGCTTATACTCCGCGGATAGAACCTTCGATTTTC
GCGATCTATGCTCGCTTTCGGCACGCCTAAGTTCATCCTCCTTGTTGGCA
TTTTCCAGGGTGAACGGCGCCTTTTCGCCCTCGACCGTGACCGCTGACCC
CAGGCCACCAGTCGCACCCGCCAGCAGCTCATCGGATAGCCATTCCGTGT
GGATCTTTGGCGTGGACGGCGTAGCCGCGGAACCAGCCGGCGTGGAAGTG
GATGCACTGCCTCCG

BO12960.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-PA 1395 CG12991-RA 696..1392 715..19 3460 99.8 Minus
CG12991-PB 1395 CG12991-RB 696..1392 715..19 3460 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RF 2611 CG12991-RF 976..1672 715..19 3470 99.9 Minus
CG12991-RC 2707 CG12991-RC 1072..1768 715..19 3470 99.9 Minus
CG12991-RB 2255 CG12991-RB 979..1675 715..19 3470 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17597518..17597926 715..307 2045 100 Minus
X 23542271 X 17598008..17598191 309..126 905 99.5 Minus
X 23542271 X 17598268..17598375 126..19 540 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:21:20 has no hits.

BO12960.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:02 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-PA 696..1395 15..715 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:09 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-PB 696..1395 15..715 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:03:25 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 979..1681 12..715 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:12 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 979..1681 12..715 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:12 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17597518..17597926 307..715 100 -> Minus
X 17598011..17598190 127..306 99 -> Minus
X 17598268..17598381 12..126 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:03:25 Download gff for BO12960.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17491551..17491959 307..715 100 -> Minus
arm_X 17492044..17492223 127..306 99 -> Minus
arm_X 17492301..17492414 12..126 97   Minus

BO12960.5prime Sequence

775 bp (676 high quality bases) assembled on 2006-05-08

> BO12960.5prime
GAAGTTATCAGTCGACATGACTTTCTACTGGTGGTCACACTGGTTCTGGA
TAACCCTGATCCTGAGTGTTAACTTGCTGTCCAGCCATGTCCACACATAT
CCCAGCCAGGAGGCGGAGTCACTGACCTCCAGCCCGCATACCCAATCCCA
AACGCAGCCCGTGCGCACCACCAAGCTCTACCAAACGACGGTCACCCAGA
TGTGGGGCCCAGCCACCCAGAGCAACATCATGGACCTGACCCACCGACCC
ACCACCACACGGCCGGTGGTAACCCCCAGTTATGGTGGTGGCCCCCAATT
GGCCCAGGTCCATGATGTTGAACAGGCAGTGGAGCTGCAGGAGGAGGATG
AGGTGGTGGAGGAGGAGGAGCTGCCGCTCAACGATCGTGACCAGCAGGAG
CAGGATGAGATTCCCGATCAAGAGCGCCGGCAGGATGAGGCAGATGCAGA
TCCAGATGCGGATGCGGATATCGAGGACGCTGTAGCAAACGAGGAGCTGG
CTCAATTCGAGTTCAAGCGATCGGCGGACTTCACCTCCGACCAGCTGAAT
AACTTTACGAATTTTAGCAGTAGCACTAGTACAAATGGCAGCAGCAGCAG
TAGCACCACCACAAAACCAGTTGCAATCAGCAGCAGTAGTCCGGCCAGCA
CAACAACCACCACCGCGAAAGTGTTGGCAACATCGCCGGCAGCTGCAATA
ACACCACGGGCCGGAGGCAGTGCATCCACTTCCCCGCCGGCTGGTTCCGC
GGCTACCGCCGTCCACGCCCAAGAT

BO12960.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-PA 1395 CG12991-RA 1..740 17..756 3675 99.8 Plus
CG12991-PB 1395 CG12991-RB 1..740 17..756 3675 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RF 2611 CG12991-RF 280..1038 16..775 3745 99.6 Plus
CG12991-RE 2734 CG12991-RE 388..1146 16..775 3745 99.6 Plus
CG12991-RD 2713 CG12991-RD 388..1146 16..775 3745 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 00:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17596809..17597320 68..579 2560 100 Plus
X 23542271 X 17597384..17597580 578..775 910 98.5 Plus
X 23542271 X 17596699..17596755 16..72 270 98.2 Plus
Blast to na_te.dros performed 2015-02-10 00:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2465 566..716 178 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6928 566..710 169 61.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6897 566..706 166 63 Plus
roo 9092 roo DM_ROO 9092bp 1056..1166 563..669 166 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1074..1146 566..638 157 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6825..6927 566..668 136 61.5 Plus
412 7567 412 412 7567bp 1569..1604 36..71 108 77.8 Plus

BO12960.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:03 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-PA 1..758 17..775 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:10 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-PB 1..758 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:27 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RD 388..1146 16..775 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:34 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12991-RD 388..1146 16..775 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:34 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17596699..17596751 16..68 100 -> Plus
X 17596810..17597320 69..579 100 -> Plus
X 17597386..17597580 580..775 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:27 Download gff for BO12960.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17490732..17490784 16..68 100 -> Plus
arm_X 17490843..17491353 69..579 100 -> Plus
arm_X 17491419..17491613 580..775 98   Plus

BO12960.complete Sequence

1426 bp assembled on 2007-06-22

GenBank Submission: FJ632636

> BO12960.complete
GAAGTTATCAGTCGACATGACTTTCTACTGGTGGTCACACTGGTTCTGGA
TAACCCTGATCCTGAGTGTTAACTTGCTGTCCAGCCATGTCCACACATAT
CCCAGCCAGGAGGCGGAGTCACTGACCTCCAGCCCGCATACCCAATCCCA
AACGCAGCCCGTGCGCACCACCAAGCTCTACCAAACGACGGTCACCCAGA
TGTGGGGCCCAGCCACCCAGAGCAACATCATGGACCTGACCCACCGACCC
ACCACCACACGGCCGGTGGTAACCCCCAGTTATGGTGGTGGCCCCCAATT
GGCCCAGGTCCATGATGTTGAACAGGCAGTGGAGCTGCAGGAGGAGGATG
AGGTGGTGGAGGAGGAGGAGCTGCCGCTCAACGATCGTGACCAGCAGGAG
CAGGATGAGATTCCCGATCAAGAGCGCCGGCAGGATGAGGCAGATGCAGA
TCCAGATGCGGATGCGGATATCGAGGACGCTGTAGCAAACGAGGAGCTGG
CTCAATTCGAGTTCAAGCGATCGGCGGACTTCACCTCCGACCAGCTGAAT
AACTTTACGAATTTTAGCAGTAGCACTAGTACAAATGGCAGCAGCAGCAG
TAGCACCACCACAAAACCAGTTGCAATCAGCAGCAGTAGTCCGGCCAGCA
CAACAACCACCACCGCGAAAGTGTTGGCAACATCGCCGGCAGCTGCAATA
ACACCACGGGCCGGAGGCAGTGCATCCACTTCCACGCCGGCTGGTTCCGC
GGCTACGCCGTCCACGCCAAAGATCCACACGGAATGGCTATCCGATGAGC
TGCTGGCGGGTGCGACTGGTGGCCTGGGGTCAGCGGTCACGGTCGAGGGC
GAAAAGGCGCCGTTCACCCTGGAAAATGCCAACAAGGAGGATGAACTTAG
GCGTGCCGAAAGCGAGCATAGATCGCGAAAATCGAAGGTTCTATCCGCGG
AGTATAAGCACATCAATCGCTACATCAACTTCTCCGGCGACACCAAGAGT
CTTCTGACCAGATCCGCCTCCGCGGCGCCCAGCGTGGCGGGGGGCGTGGC
CGGATCCGGGTTCTACGACGGAGGCGTCGGCGACGAGGGCAATATCTCAT
CCGAGGCACTGGCCATTCAGCGAACGTACTTCCTGGATGCGGGTGCCATT
TCGGCGATTTGCTTCACTGTCTTCGGCGTCTGCTGCACAGTGGGCACCAT
TGGGATCGTACTGTACCGTCGTCGGTATCTGAACAAACCGCAAGCGCTCA
GCGAACCAGACTCGAGTGTCTATATCGATGATAGCACGATGCGGGTGAGT
GACAATTCGGATGAGATGTACAGCCTGGACAACGACTCGTTTCTCAATTC
GCTGGAGGCGATGACAATACAGAACTACTGGACGGATACGGTCAAACATA
CAAAGCTTGCAAGCTTTCTAGACCAT

BO12960.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RF 1395 CG12991-PF 1..1392 17..1408 6945 99.9 Plus
CG12991-RB 1395 CG12991-PB 1..1392 17..1408 6945 99.9 Plus
CG12991-RA 1395 CG12991-PA 1..1392 17..1408 6945 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-RF 2611 CG12991-RF 280..1672 16..1408 6950 99.9 Plus
CG12991-RB 2255 CG12991-RB 283..1675 16..1408 6950 99.9 Plus
CG12991-RA 2360 CG12991-RA 388..1780 16..1408 6950 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17597384..17597926 578..1120 2715 100 Plus
X 23542271 X 17596809..17597320 68..579 2560 100 Plus
X 23542271 X 17598008..17598191 1118..1301 905 99.5 Plus
X 23542271 X 17598268..17598375 1301..1408 540 100 Plus
X 23542271 X 17596699..17596755 16..72 270 98.2 Plus
Blast to na_te.dros performed 2014-11-27 14:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2465 566..716 178 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1056..1166 563..669 166 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1074..1146 566..638 157 71.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6825..6927 566..668 136 61.5 Plus

BO12960.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:10 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 1..1395 17..1412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:43 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 283..1681 16..1415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:00 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 389..1780 17..1410 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:10 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RB 283..1681 16..1415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:01 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
CG12991-RA 389..1780 17..1410 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:01 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
X 17598011..17598190 1121..1300 99 -> Plus
X 17598268..17598375 1301..1410 98   Plus
X 17596700..17596751 17..68 100 -> Plus
X 17596810..17597320 69..579 100 -> Plus
X 17597386..17597926 580..1120 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:00 Download gff for BO12960.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17490733..17490784 17..68 100 -> Plus
arm_X 17490843..17491353 69..579 100 -> Plus
arm_X 17491419..17491959 580..1120 100 -> Plus
arm_X 17492044..17492223 1121..1300 99 -> Plus
arm_X 17492301..17492408 1301..1410 98   Plus

BO12960.pep Sequence

Translation from 16 to 1426

> BO12960.pep
MTFYWWSHWFWITLILSVNLLSSHVHTYPSQEAESLTSSPHTQSQTQPVR
TTKLYQTTVTQMWGPATQSNIMDLTHRPTTTRPVVTPSYGGGPQLAQVHD
VEQAVELQEEDEVVEEEELPLNDRDQQEQDEIPDQERRQDEADADPDADA
DIEDAVANEELAQFEFKRSADFTSDQLNNFTNFSSSTSTNGSSSSSTTTK
PVAISSSSPASTTTTTAKVLATSPAAAITPRAGGSASTSTPAGSAATPST
PKIHTEWLSDELLAGATGGLGSAVTVEGEKAPFTLENANKEDELRRAESE
HRSRKSKVLSAEYKHINRYINFSGDTKSLLTRSASAAPSVAGGVAGSGFY
DGGVGDEGNISSEALAIQRTYFLDAGAISAICFTVFGVCCTVGTIGIVLY
RRRYLNKPQALSEPDSSVYIDDSTMRVSDNSDEMYSLDNDSFLNSLEAMT
IQNYWTDTVKHTKLASFLDH

BO12960.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12991-PF 464 CG12991-PF 1..464 1..464 2385 100 Plus
CG12991-PB 464 CG12991-PB 1..464 1..464 2385 100 Plus
CG12991-PA 464 CG12991-PA 1..464 1..464 2385 100 Plus
CG12991-PE 469 CG12991-PE 1..469 1..464 2364 98.7 Plus
CG12991-PD 462 CG12991-PD 1..462 1..464 2364 99.6 Plus