Clone Sequence Records
BO12962.3prime Sequence
804 bp (789 high quality bases) assembled on 2006-05-08
> BO12962.3prime
ATGGTCTAGAAAGCTTGCAACGTAAACTGACAGGAACGACGTAATGTTGT
GCCTGCAGACAGGACAGCGGTCTTCTAAAAGGAGCACGAGCTGCAGGGAG
CACTCTTTGCAGAGGCAGAGGTGCCGGCATGGCATGACTACTACGTTCCT
GCTTTGAGCCATGCACACGACACAGCGTTCTGGACTCGCGGATCCTGCGT
TCTCTGACACATACCAAACATTGCGCTCCCNGTGTTGNNNTTTNTGATGG
GTNNNTNNGTNNNNGNTTTGNGTCTTCGTNGAGATTTNNNTGGGTNNNNG
TTGNNGNNGGTNGATGAGNNTNNGGTNNNNNTNGNGGNGGAANNTNTNGN
GANNGAGGAGGAGGGNNAATCCTATNGAGGNNNGGAANGNANTGTTNAGN
AAGNTNAAGNNATGGGNNANGATTGAGTGGANNANAAAGTNTAGGAGGNA
GTNNNAGAGGAATAGTATGGNNNTNGGNAGNAGNATNAGNAGNNANAAGA
TGGNATNANNNAGATNGATGAGTAAGTTGNAGATGAATNGGGATATGNAG
TGANNAAAATNGAGTANATTNTTGAGNNNGNNTTTGGTGNNGNNGTAGAA
GTAGTNNGNNANATCTAGNGTGATGAGGNNNAAGTNGNGGATGNNNTCGT
TGATATTNNTGAANGNGNATCTNAANAGATTNNATNNTTTNNTGGTGNNC
TCCACCAAACAGAAGCCGACGAGGTAGCTGCCCCACAGGAAGTAGTACAC
GCCAGTAATCACTGCATCAATCACGCTGGCCAGCGGACGCAGCAAGACCA
GATC
BO12962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PA | 825 | CG2617-RA | 618..822 | 223..19 | 1025 | 100 | Minus |
| CG2617-PA | 825 | CG2617-RA | 37..141 | 804..700 | 500 | 99 | Minus |
| CG2617-PA | 825 | CG2617-RA | 265..329 | 576..512 | 154 | 86.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 118..903 | 804..19 | 2217 | 80.8 | Minus |
| CG2617-RA | 1262 | CG2617-RA | 118..903 | 804..19 | 2217 | 80.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682485..20683270 | 804..19 | 2217 | 80.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:42:02 has no hits.
BO12962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:06 Download gff for
BO12962.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-PA | 294..385 | 456..547 | 77 | | Minus |
| CG2617-PA | 618..825 | 16..223 | 99 | | Minus |
| CG2617-PA | 37..141 | 700..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:32:15 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-26 10:42:14 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 18:41:39 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2015-02-11 18:41:39 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-26 10:42:14 has no hits.
BO12962.5prime Sequence
799 bp (707 high quality bases) assembled on 2006-05-08
> BO12962.5prime
GAAGTTATCAGTCGACATGCTGGACGCTCTAATTCGGGCAGCGGAGCTTG
TGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGATTGATGCAGTGATT
ACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTGTTT
GGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGA
ATATCAACGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCG
GACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGAATGTACTCGATTT
TGGTCACTGCATATCCCGATTCATCTGCAACTTACTCATCGATCTGGGTG
ATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGCCATACTATTCCTC
TGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCCATGGCTT
GAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCC
TCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTG
CTGCAACGTGGACGCATTGAAATCTCGACGAAGACGCAAAGCGTTTACCT
ATGGACCCATCATAAATTGCAACACTTCATACACAATGTTTGGTATGTGT
CAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGTCGTGTGCATGGCT
CAAAGCAGGAACGTAGTAGTCATGCCCTGCCGGCACCTCTGCCTCTGCAA
AGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGACCGCTGTCCTGTC
BO12962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PA | 825 | CG2617-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 81..864 | 16..799 | 3905 | 99.9 | Plus |
| CG2617-RA | 1262 | CG2617-RA | 81..864 | 16..799 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:49:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682448..20683231 | 16..799 | 3905 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:49:21 has no hits.
BO12962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:06 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:16 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:06:42 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 78..864 | 13..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:55 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 78..864 | 13..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:55 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20682445..20683231 | 13..799 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:06:42 Download gff for
BO12962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20682445..20683231 | 13..799 | 99 | | Plus |
BO12962.complete Sequence
856 bp assembled on 2006-10-11
GenBank Submission: FJ632637
> BO12962.complete
GAAGTTATCAGTCGACATGCTGGACGCTCTAATTCGGGCAGCGGAGCTTG
TGGATCTGGTCCTGCTGCGTCCGCTGGCCAGCGTGATTGATGCAGTGATT
ACTGGCGTGTACTACTTCCTGTGGGGCAGCTACCTCGTCGGCTTCTGTTT
GGTGGAGGGCAGCAGGAAAGGATGGAATCTGTTGAGATGCGCGGTCAGGA
ATATCAACGAGGGCATCCGCGACTTGGGCCTCATCACGCTAGATGTGGCG
GACTACTTCTACGGCGGCACCAAAGGCGGGCTCAAGAATGTACTCGATTT
TGGTCACTGCATATCCCGATTCATCTGCAACTTACTCATCGATCTGGGTG
ATGGCATCTTGTGGCTGCTGATGCTGCTGCCGAGGGCCATACTATTCCTC
TGGGACTGCCTCCTAGACTTTGTGGTGCACTCAATCGTGGCCCATGGCTT
GAGCTTGCTGAACAGTGCGTTCCGGGCCTCGATAGGATTGGCCCTGCTCC
TCGTTCTCTATATGTTCCGCCGCTATGTGTACCTGATGCTCATCTACCTG
CTGCAACGTGGACGCATTGAAATCTCGACGAAGACGCAAAGCGTTTACCT
ATGGACCCATCATAAATTGCAACACTTCATACACAATGTTTGGTATGTGT
CAGAGAACGCAGGATCCGCGAGTCCAGAACGCTGTGTCGTGTGCATGGCT
CAAAGCAGGAACGTAGTAGTCATGCCATGCCGGCACCTCTGCCTCTGCAA
AGAGTGCTCCCTGCAGCTCGTGCTCCTTTTAGAAGACCGCTGTCCTGTCT
GCAGGCACAACATTACGTCGTTCCTGTCAGTTTACGTTGCAAGCTTTCTA
GACCAT
BO12962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 825 | CG2617-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG2617-RA | 825 | CG2617-PA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-RB | 1062 | CG2617-RB | 81..903 | 16..838 | 4115 | 100 | Plus |
| CG2617-RA | 1262 | CG2617-RA | 81..903 | 16..838 | 4115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20682448..20683270 | 16..838 | 4115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:30:28 has no hits.
BO12962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:29 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:12 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 76..901 | 13..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:00:22 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 82..903 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:29 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 76..901 | 13..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:03:03 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2617-RA | 82..903 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:03:03 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20682449..20683270 | 17..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:00:22 Download gff for
BO12962.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20682449..20683270 | 17..840 | 99 | | Plus |
BO12962.pep Sequence
Translation from 16 to 856
> BO12962.pep
MLDALIRAAELVDLVLLRPLASVIDAVITGVYYFLWGSYLVGFCLVEGSR
KGWNLLRCAVRNINEGIRDLGLITLDVADYFYGGTKGGLKNVLDFGHCIS
RFICNLLIDLGDGILWLLMLLPRAILFLWDCLLDFVVHSIVAHGLSLLNS
AFRASIGLALLLVLYMFRRYVYLMLIYLLQRGRIEISTKTQSVYLWTHHK
LQHFIHNVWYVSENAGSASPERCVVCMAQSRNVVVMPCRHLCLCKECSLQ
LVLLLEDRCPVCRHNITSFLSVYVASFLDH
BO12962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2617-PB | 274 | CG2617-PB | 1..274 | 1..274 | 1442 | 100 | Plus |
| CG2617-PA | 274 | CG2617-PA | 1..274 | 1..274 | 1442 | 100 | Plus |
