Clone BO12963 Report

Search the DGRC for BO12963

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)34Fc-RA
Protein status:BO12963.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO12963.5prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-08

> BO12963.5prime
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGGCAAGCT
TTCTAGACC

BO12963.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7532-PA 480 CG7532-RA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RA 656 CG7532-RA 54..535 12..493 2395 99.8 Plus
l(2)34Fc-RB 733 CG7532-RB 42..518 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14349235..14349645 493..83 2055 100 Minus
2L 23513712 2L 14349708..14349780 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:55:33 has no hits.

BO12963.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:07 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7532-PA 1..480 17..494 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:17 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7532-PA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:43 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 47..543 5..501 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:51 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 47..543 5..501 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:51 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14349227..14349639 89..501 99 <- Minus
2L 14349709..14349785 9..88 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:43 Download gff for BO12963.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14349227..14349639 89..501 99 <- Minus
arm_2L 14349709..14349785 9..88 95   Minus

BO12963.complete Sequence

511 bp assembled on 2006-10-11

GenBank Submission: FJ632638

> BO12963.complete
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGGCAAGCT
TTCTAGACCAT

BO12963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RB 480 CG7532-PB 1..477 17..493 2385 100 Plus
l(2)34Fc-RA 480 CG7532-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:27
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-RA 656 CG7532-RA 54..535 12..493 2395 99.8 Plus
l(2)34Fc-RB 733 CG7532-RB 42..518 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14349235..14349645 493..83 2055 100 Minus
2L 23513712 2L 14349708..14349780 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:16:26 has no hits.

BO12963.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:22 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 1..480 17..494 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:03 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 44..540 5..501 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:30 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 64..535 22..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:22 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
CG7532-RA 44..540 5..501 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:22 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)34Fc-RA 64..535 22..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:22 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14349233..14349639 89..495 99 <- Minus
2L 14349709..14349775 22..88 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:30 Download gff for BO12963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14349233..14349639 89..495 99 <- Minus
arm_2L 14349709..14349775 22..88 100   Minus

BO12963.pep Sequence

Translation from 16 to 511

> BO12963.pep
MFRLLVLAACLAISVHAYSDGAPKAACRDLTPQHGAKLQVTKPPYSISGP
SHVRSDQKLTLTLGGDEFLGFMIQARDGQNRVVGQFQVVDSVHSQTLDCS
GKDDTITHLSAQKGKPLTGITFDWIPPAGYKGNVKFMATVVQTGFVYWVG
RVTKDIDVEASFLDH

BO12963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)34Fc-PB 159 CG7532-PB 1..159 1..159 836 100 Plus
l(2)34Fc-PA 159 CG7532-PA 1..159 1..159 836 100 Plus