Clone Sequence Records
BO12963.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO12963.5prime
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGGCAAGCT
TTCTAGACC
BO12963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7532-PA | 480 | CG7532-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)34Fc-RA | 656 | CG7532-RA | 54..535 | 12..493 | 2395 | 99.8 | Plus |
l(2)34Fc-RB | 733 | CG7532-RB | 42..518 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14349235..14349645 | 493..83 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 14349708..14349780 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:55:33 has no hits.
BO12963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:07 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7532-PA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:32:17 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7532-PA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:43 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)34Fc-RA | 47..543 | 5..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:02:51 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)34Fc-RA | 47..543 | 5..501 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:02:51 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14349227..14349639 | 89..501 | 99 | <- | Minus |
2L | 14349709..14349785 | 9..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:43 Download gff for
BO12963.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14349227..14349639 | 89..501 | 99 | <- | Minus |
arm_2L | 14349709..14349785 | 9..88 | 95 | | Minus |
BO12963.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ632638
> BO12963.complete
GAAGTTATCAGTCGACATGTTCCGTTTGTTGGTTCTTGCGGCCTGCCTGG
CCATCAGTGTCCACGCCTACTCCGATGGTGCTCCAAAGGCCGCCTGTCGT
GACCTGACGCCCCAGCACGGAGCCAAGCTGCAGGTGACCAAGCCGCCGTA
CAGCATCTCCGGACCCTCCCATGTGCGCTCGGATCAAAAGCTGACCCTGA
CGCTGGGCGGCGATGAGTTCCTTGGCTTCATGATCCAGGCACGCGATGGC
CAGAACCGCGTCGTCGGCCAGTTCCAGGTGGTGGACTCCGTGCACTCGCA
GACCTTGGACTGCTCCGGCAAGGACGACACCATCACCCATCTGAGTGCGC
AAAAGGGCAAGCCGCTGACCGGCATCACCTTCGACTGGATTCCGCCAGCA
GGCTACAAGGGCAACGTCAAGTTCATGGCCACCGTGGTGCAGACCGGATT
CGTTTACTGGGTGGGTCGCGTCACAAAAGACATCGATGTGGAGGCAAGCT
TTCTAGACCAT
BO12963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)34Fc-RB | 480 | CG7532-PB | 1..477 | 17..493 | 2385 | 100 | Plus |
l(2)34Fc-RA | 480 | CG7532-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)34Fc-RA | 656 | CG7532-RA | 54..535 | 12..493 | 2395 | 99.8 | Plus |
l(2)34Fc-RB | 733 | CG7532-RB | 42..518 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14349235..14349645 | 493..83 | 2055 | 100 | Minus |
2L | 23513712 | 2L | 14349708..14349780 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:16:26 has no hits.
BO12963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:59:22 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7532-RA | 1..480 | 17..494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:03 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7532-RA | 44..540 | 5..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:30 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)34Fc-RA | 64..535 | 22..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:59:22 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7532-RA | 44..540 | 5..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:22 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)34Fc-RA | 64..535 | 22..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:22 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14349233..14349639 | 89..495 | 99 | <- | Minus |
2L | 14349709..14349775 | 22..88 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:30 Download gff for
BO12963.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14349233..14349639 | 89..495 | 99 | <- | Minus |
arm_2L | 14349709..14349775 | 22..88 | 100 | | Minus |
BO12963.pep Sequence
Translation from 16 to 511
> BO12963.pep
MFRLLVLAACLAISVHAYSDGAPKAACRDLTPQHGAKLQVTKPPYSISGP
SHVRSDQKLTLTLGGDEFLGFMIQARDGQNRVVGQFQVVDSVHSQTLDCS
GKDDTITHLSAQKGKPLTGITFDWIPPAGYKGNVKFMATVVQTGFVYWVG
RVTKDIDVEASFLDH
BO12963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)34Fc-PB | 159 | CG7532-PB | 1..159 | 1..159 | 836 | 100 | Plus |
l(2)34Fc-PA | 159 | CG7532-PA | 1..159 | 1..159 | 836 | 100 | Plus |