Clone BO12986 Report

Search the DGRC for BO12986

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptGap69C-RA
Protein status:BO12986.pep: validated full length
Sequenced Size:1438

Clone Sequence Records

BO12986.3prime Sequence

802 bp (711 high quality bases) assembled on 2006-05-08

> BO12986.3prime
ATGGTCTAGAAAGCTTGCGTTCATCAGCAGATTCCAGGCGTCGTCCTCGG
CAGTGCCTTTGTTGGCGGACGAGGCCGTTGCCGTCTTGGGCTTCACACTC
TTCACGTCCAGGCTCTCGAAGCCCTCGCTCAGCTTCTGCGATGTGTCCTG
CAGCTTCATGTTGCGGCGAGCTGTCGATCCGCCGGACGAAGCGTTCTGGT
AGGAGGTCTCTGAACTCTGATAGTTCGTCGCCTCGAAGCCGGACCAGTCA
GCGTCGCGGGTTAGGCCGGCGGAGGCGGTACCGCCGCCGCTGCTGCTACT
CAACTGATTGTGGTACGAACTCGAGCTGGTCATGTGCGACTTGCTGTTGC
CGTTGTCCTGCCAGCCGCCCCAGTCGCTGTCGCTGACGCCGCTCTGCTGA
CCCAAGCCTCCGGCCAGATTACCGCCCACGGAATTGGAACGCTGGTAGGC
GCTGCTGTCCTCGAAGTTGGGATCGTTGTATCCGCCCTGCGGCGACGAAA
TGTTGCTGCCCGCCAGATTATTCCAACCTCGTTTGCCCATATCGGTGACC
TTGCTGGCTACATCGGTAACTCCGCATTGTACGGAATCTAGCAGAGTTCC
CTCTTTAATCTTTGTCGAGGCCAAATTGACGGTGGTGACGGCCTTCTCCT
TGGCGGTGCTGGCCAACTTGGAGGCGTTGGTGGAGAAAAGGCTCCAGCCA
GAGGCCAAAGTGGAAAGCGTCGAGTCAAAAAGCTCCTGAGATTGCGTTTT
CGGTGGTGGTTCGCGTGTGAACCCGAAACCTGCATATTTTCCGCCCTGAC
TC

BO12986.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4237-PA 1407 Gap69C-RA 621..1404 802..19 3895 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 2085 CG4237-RA 989..1772 802..19 3905 99.9 Minus
ArfGAP1-RB 2025 CG4237-RB 1179..1712 552..19 2670 100 Minus
ArfGAP1-RB 2025 CG4237-RB 989..1181 802..610 950 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12415339..12415871 19..551 2665 100 Plus
3L 28110227 3L 12416275..12416467 610..802 950 99.5 Plus
3L 28110227 3L 12415942..12416006 547..611 325 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:58:18 has no hits.

BO12986.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:50 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 621..1407 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:17 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 621..1407 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:54 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 989..1772 19..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:43 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 989..1772 19..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:43 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12415339..12415869 19..549 100 <- Plus
3L 12415945..12416004 550..609 100 <- Plus
3L 12416275..12416467 610..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:54 Download gff for BO12986.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12408439..12408969 19..549 100 <- Plus
arm_3L 12409045..12409104 550..609 100 <- Plus
arm_3L 12409375..12409567 610..802 99   Plus

BO12986.5prime Sequence

801 bp (755 high quality bases) assembled on 2006-05-08

> BO12986.5prime
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCAAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
T

BO12986.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4237-PA 1407 Gap69C-RA 1..785 17..801 3925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RB 2025 CG4237-RB 361..1153 9..801 3935 99.7 Plus
ArfGAP1-RA 2085 CG4237-RA 361..1153 9..801 3935 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12416540..12417092 624..72 2750 99.8 Minus
3L 28110227 3L 12416303..12416479 801..625 885 100 Minus
3L 28110227 3L 12417153..12417220 76..9 310 97.1 Minus
Blast to na_te.dros performed 2015-02-12 11:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 3794..3831 462..499 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1541..1589 417..465 110 69.4 Plus

BO12986.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:51 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:19 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4237-PA 1..785 17..801 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:37 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 355..1153 3..801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:09 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 355..1153 3..801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:09 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12416303..12416479 625..801 100 <- Minus
3L 12416540..12417087 77..624 100 <- Minus
3L 12417153..12417226 3..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:37 Download gff for BO12986.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12409403..12409579 625..801 100 <- Minus
arm_3L 12409640..12410187 77..624 100 <- Minus
arm_3L 12410253..12410326 3..76 93   Minus

BO12986.complete Sequence

1438 bp assembled on 2006-10-11

GenBank Submission: FJ632639

> BO12986.complete
GAAGTTATCAGTCGACATGGCGAGTCCCAGAACGCGACGGGTGCTCCAGG
AACTGAAACCCCAGGATGAGAACTCGAAATGCTTCGAGTGCGGTACCCAC
AATCCGCAGTGGGTGTCCGTGACCTACGGCATCTGGATCTGCCTGGAGTG
CTCCGGCAAGCATCGCAGTCTGGGCGTGCATCTGTCCTTCGTGCGCTCCG
TCACTATGGATAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGCGGGC
GGCAATCGCAATGCGCGCGAGTTTCTGGAGGATCAGGAGGACTGGAACGA
ACGGGCGCCTATCACGCAGCGTTACAACTCGAAGGCGGCTGCTTTGTACC
GCGATAAGATAGCCACCTTGGCCCAGGGCAAGAGCTGGGATCTCAAGGAG
GCGCAAGGCCGCGTGGGCAGCAACAATAGCTTCAGCTCAGGTGGCTCCAG
CAACAGCAGCTACCAGTCGCGACCCAGTGCAACAGGTTATGGCGGAAACG
GAGGCTATCAGAATGGCGGAGGCGCCGAGCCTGGAGGCTATCAGCAGTAC
CAAACGCAGGAGTTCAAGGACCAGAAGGAGGAGTTCTTCAGCCGACGCCA
AGTGGAGAATGCCTCCAGGCCAGAAAACTTGCCACCGAGTCAGGGCGGAA
AATATGCAGGTTTCGGGTTCACACGCGAACCACCACCGAAAACGCAATCT
CAGGAGCTTTTCGACTCGACGCTTTCCACTTTGGCCTCTGGCTGGAGCCT
TTTCTCCACCAACGCCTCCAAGTTGGCCAGCACCGCCAAGGAGAAGGCCG
TCACCACCGTCAATTTGGCCTCGACAAAGATTAAAGAGGGAACTCTGCTA
GATTCCGTACAATGCGGAGTTACCGATGTAGCCAGCAAGGTCACCGATAT
GGGCAAACGAGGTTGGAATAATCTGGCGGGCAGCAACATTTCGTCGCCGC
AGGGCGGATACAACGATCCCAACTTCGAGGACAGCAGCGCCTACCAGCGT
TCCAATTCCGTGGGCGGTAATCTGGCCGGAGGCTTGGGTCAGCAGAGCGG
CGTCAGCGACAGCGACTGGGGCGGCTGGCAGGACAACGGCAACAGCAAGT
CGCACATGACCAGCTCGAGTTCGTACCACAATCAGTTGAGTAGCAGCAGC
GGCGGCGGTACCGCCTCCGCCGGCCTAACCCGCGACGCTGACTGGTCCGG
CTTCGAGGCGACGAACTATCAGAGTTCAGAGACCTCCTACCAGAACGCTT
CGTCCGGCGGATCGACAGCTCGCCGCAACATGAAGCTGCAGGACACATCG
CAGAAGCTGAGCGAGGGCTTCGAGAGCCTGGACGTGAAGAGTGTGAAGCC
CAAGACGGCAACGGCCTCGTCCGCCAACAAAGGCACTGCCGAGGACGACG
CCTGGAATCTGCTGATGAACGCAAGCTTTCTAGACCAT

BO12986.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 1407 CG4237-PA 1..1404 17..1420 7020 100 Plus
ArfGAP1-RB 1347 CG4237-PB 1..813 17..829 4065 100 Plus
ArfGAP1-RB 1347 CG4237-PB 811..1344 887..1420 2670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-RA 2085 CG4237-RA 361..1772 9..1420 7030 99.9 Plus
ArfGAP1-RB 2025 CG4237-RB 361..1181 9..829 4075 99.8 Plus
ArfGAP1-RB 2025 CG4237-RB 1179..1712 887..1420 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12416540..12417092 624..72 2750 99.8 Minus
3L 28110227 3L 12415339..12415871 1420..888 2665 100 Minus
3L 28110227 3L 12416275..12416479 829..625 1025 100 Minus
3L 28110227 3L 12415942..12416006 892..828 325 100 Minus
3L 28110227 3L 12417153..12417220 76..9 310 97.1 Minus
Blast to na_te.dros performed 2014-11-27 08:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 3794..3831 462..499 118 78.9 Plus

BO12986.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:30 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 1..1407 17..1421 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:43 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 478..1895 3..1420 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:26 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 369..1772 17..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:30 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
Gap69C-RA 478..1895 3..1420 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:24 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
ArfGAP1-RA 369..1772 17..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:24 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12415337..12415869 890..1422 99 <- Minus
3L 12415945..12416004 830..889 100 <- Minus
3L 12416275..12416479 625..829 100 <- Minus
3L 12416540..12417087 77..624 100 <- Minus
3L 12417153..12417212 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:26 Download gff for BO12986.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12408437..12408969 890..1422 99 <- Minus
arm_3L 12409045..12409104 830..889 100 <- Minus
arm_3L 12409375..12409579 625..829 100 <- Minus
arm_3L 12409640..12410187 77..624 100 <- Minus
arm_3L 12410253..12410312 17..76 100   Minus

BO12986.pep Sequence

Translation from 16 to 1438

> BO12986.pep
MASPRTRRVLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHR
SLGVHLSFVRSVTMDKWKDIELEKMKAGGNRNAREFLEDQEDWNERAPIT
QRYNSKAAALYRDKIATLAQGKSWDLKEAQGRVGSNNSFSSGGSSNSSYQ
SRPSATGYGGNGGYQNGGGAEPGGYQQYQTQEFKDQKEEFFSRRQVENAS
RPENLPPSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLASGWSLFSTNA
SKLASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTDVASKVTDMGKRGW
NNLAGSNISSPQGGYNDPNFEDSSAYQRSNSVGGNLAGGLGQQSGVSDSD
WGGWQDNGNSKSHMTSSSSYHNQLSSSSGGGTASAGLTRDADWSGFEATN
YQSSETSYQNASSGGSTARRNMKLQDTSQKLSEGFESLDVKSVKPKTATA
SSANKGTAEDDAWNLLMNASFLDH

BO12986.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
ArfGAP1-PA 468 CG4237-PA 1..468 1..468 2462 100 Plus
ArfGAP1-PB 448 CG4237-PB 1..448 1..468 2332 95.7 Plus
ArfGAP3-PE 513 CG6838-PE 16..126 9..120 271 46.9 Plus
ArfGAP3-PF 514 CG6838-PF 16..126 9..120 271 46.9 Plus
ArfGAP3-PG 549 CG6838-PG 16..126 9..120 271 46.9 Plus