Clone BO12987 Report

Search the DGRC for BO12987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:87
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO12987.pep: validated full length
Sequenced Size:1471

Clone Sequence Records

BO12987.3prime Sequence

755 bp (705 high quality bases) assembled on 2006-05-08

> BO12987.3prime
ATGGTCTAGAAAGCTTGCGAAAAAGTCCATGTCCCCGCAATTGACGTCCA
GAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGCC
GCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGATT
TATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCAG
CGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATCT
TCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACGT
CGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACCT
TACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACTC
TGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTATC
GTGGTGCTTTATTAGGAACAGGAATACCCCGCCTGGTGTACGTCTCCGTA
TGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTCC
TTGTATAGCTCTAGGCACACATCTATGCCAAGAACCTCCACGACTCGAAC
AAGTAATTCGTCCTTTTCCTCGTACAGTTTGCTGGCCATTTCGGTAGCCA
CATCCGAAGGATCTCTCTCACCCACTTCGTTTAAGTCCAGAATGTGTCTG
GGCTCGCAGAAATCGGAAGATCCGCTGGCCGAAGATGTCCCACGACGTGA
CCGGT

BO12987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 623..1359 755..19 3685 100 Minus
CG8069-PB 1074 Phax-RB 335..1071 755..19 3685 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RB 1591 CG8069-RB 755..1491 755..19 3685 100 Minus
Phax-RA 1533 CG8069-RA 697..1433 755..19 3685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9115384..9115660 507..231 1385 100 Minus
2R 25286936 2R 9115719..9115930 230..19 1060 100 Minus
2R 25286936 2R 9115028..9115183 755..600 780 100 Minus
2R 25286936 2R 9115238..9115330 600..508 465 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:31:06 has no hits.

BO12987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:52 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PA 623..1362 18..755 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:21 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PB 335..1074 18..755 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:18:54 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 697..1438 13..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:57 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 697..1438 13..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:57 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9115028..9115183 600..755 100 -> Minus
2R 9115239..9115330 508..599 100 -> Minus
2R 9115384..9115660 231..507 100 -> Minus
2R 9115719..9115935 13..230 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:18:54 Download gff for BO12987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5002533..5002688 600..755 100 -> Minus
arm_2R 5002744..5002835 508..599 100 -> Minus
arm_2R 5002889..5003165 231..507 100 -> Minus
arm_2R 5003224..5003440 13..230 98   Minus

BO12987.5prime Sequence

880 bp (727 high quality bases) assembled on 2006-05-08

> BO12987.5prime
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTC

BO12987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8069-PA 1362 Phax-RA 1..786 95..880 3930 100 Plus
CG8069-PB 1074 Phax-RB 1..498 383..880 2490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1533 CG8069-RA 1..860 21..880 4300 100 Plus
Phax-RB 1591 CG8069-RB 176..918 138..880 3715 100 Plus
Phax-RB 1591 CG8069-RB 1..119 21..139 595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115183 138..872 3675 100 Plus
2R 25286936 2R 9114270..9114392 17..139 615 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:16:56 has no hits.

BO12987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:53 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PA 1..786 95..880 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:22 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8069-PA 1..786 95..880 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:31 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..860 21..880 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:02 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..860 21..880 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:02 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9114261..9114392 8..139 96 -> Plus
2R 9114451..9115189 140..880 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:31 Download gff for BO12987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001766..5001897 8..139 96 -> Plus
arm_2R 5001956..5002694 140..880 99   Plus

BO12987.complete Sequence

1471 bp assembled on 2006-10-11

GenBank Submission: FJ632640

> BO12987.complete
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGA
TGTGTGCCTAGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCG
GCATGATGATCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTC
CTGTTCCTAATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCG
CATTTTTAGTGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCG
AAACGTTGATGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGC
AAGCAGGTTACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACAT
GCAGGGCGACGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACC
CGCCACCCTCCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTAC
AGGACCCACGAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTC
CACATCCAAAGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAA
TCAGCTACGACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTT
TTCGCAAGCTTTCTAGACCAT

BO12987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1362 CG8069-PA 1..1359 95..1453 6795 100 Plus
Phax-RB 1074 CG8069-PB 1..1071 383..1453 5355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-RA 1533 CG8069-RA 1..1433 21..1453 7165 100 Plus
Phax-RB 1591 CG8069-RB 176..1491 138..1453 6580 100 Plus
Phax-RB 1591 CG8069-RB 1..119 21..139 595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9114449..9115183 138..872 3675 100 Plus
2R 25286936 2R 9115384..9115660 965..1241 1385 100 Plus
2R 25286936 2R 9115719..9115930 1242..1453 1060 100 Plus
2R 25286936 2R 9114270..9114392 17..139 615 100 Plus
2R 25286936 2R 9115238..9115330 872..964 465 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:00 has no hits.

BO12987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:06 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1362 95..1454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:11 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1449 10..1459 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:23 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1433 21..1455 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:06 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1449 10..1459 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:39 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
Phax-RA 1..1433 21..1455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:39 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9114270..9114392 17..139 100 -> Plus
2R 9114451..9115183 140..872 100 -> Plus
2R 9115239..9115330 873..964 100 -> Plus
2R 9115384..9115660 965..1241 100 -> Plus
2R 9115719..9115930 1242..1455 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:23 Download gff for BO12987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5001775..5001897 17..139 100 -> Plus
arm_2R 5001956..5002688 140..872 100 -> Plus
arm_2R 5002744..5002835 873..964 100 -> Plus
arm_2R 5002889..5003165 965..1241 100 -> Plus
arm_2R 5003224..5003435 1242..1455 99   Plus

BO12987.pep Sequence

Translation from 16 to 1471

> BO12987.pep
MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV
YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK
LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL
QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED
GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC
EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL
YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED
RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ
SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA
AAAQGAPLKDLISYDHDFLDVNCGDMDFFASFLDH

BO12987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
Phax-PA 453 CG8069-PA 1..453 27..479 2358 100 Plus
Phax-PB 357 CG8069-PB 1..357 123..479 1862 100 Plus