Clone Sequence Records
BO12987.3prime Sequence
755 bp (705 high quality bases) assembled on 2006-05-08
> BO12987.3prime
ATGGTCTAGAAAGCTTGCGAAAAAGTCCATGTCCCCGCAATTGACGTCCA
GAAAGTCGTGGTCGTAGCTGATTAAATCCTTCAGCGGCGCTCCCTGAGCC
GCCGCCGCTGCTTTGGATGTGGAGGGAAGTTCCGCATTGTCCACAAGATT
TATATTGATCTCGTGGGTCCTGTACTCAGGGCTGTCGTGCTCCTGCTCAG
CGCCAACAGGGGAGGGTGGCGGGTTGGACAAGCTGCCCGGTTGCTTATCT
TCACTTTGCTCGTCGCCCTGCATGTAGTACTCTTTGCGCTGATTTAACGT
CGGCAGTTCCGTAACCTGCTTGCTGAGGCACTTCTTCAACTCTTCCACCT
TACGGTCCCGCATCAACGTTTCGATCTGCTTTCGAGACTTGCTCAGACTC
TGGCGATCCTCACTAAAAATGCGCTTCTGCTGCTCCTGAGTGATGTTATC
GTGGTGCTTTATTAGGAACAGGAATACCCCGCCTGGTGTACGTCTCCGTA
TGCCGTTTTTGATCATCATGCCGCCATCGGCTTCAATGCGCTGAGTTTCC
TTGTATAGCTCTAGGCACACATCTATGCCAAGAACCTCCACGACTCGAAC
AAGTAATTCGTCCTTTTCCTCGTACAGTTTGCTGGCCATTTCGGTAGCCA
CATCCGAAGGATCTCTCTCACCCACTTCGTTTAAGTCCAGAATGTGTCTG
GGCTCGCAGAAATCGGAAGATCCGCTGGCCGAAGATGTCCCACGACGTGA
CCGGT
BO12987.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 623..1359 | 755..19 | 3685 | 100 | Minus |
CG8069-PB | 1074 | Phax-RB | 335..1071 | 755..19 | 3685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RB | 1591 | CG8069-RB | 755..1491 | 755..19 | 3685 | 100 | Minus |
Phax-RA | 1533 | CG8069-RA | 697..1433 | 755..19 | 3685 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9115384..9115660 | 507..231 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 9115719..9115930 | 230..19 | 1060 | 100 | Minus |
2R | 25286936 | 2R | 9115028..9115183 | 755..600 | 780 | 100 | Minus |
2R | 25286936 | 2R | 9115238..9115330 | 600..508 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:31:06 has no hits.
BO12987.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:52 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PA | 623..1362 | 18..755 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:21 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PB | 335..1074 | 18..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 21:18:54 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 697..1438 | 13..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:57 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 697..1438 | 13..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:57 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9115028..9115183 | 600..755 | 100 | -> | Minus |
2R | 9115239..9115330 | 508..599 | 100 | -> | Minus |
2R | 9115384..9115660 | 231..507 | 100 | -> | Minus |
2R | 9115719..9115935 | 13..230 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 21:18:54 Download gff for
BO12987.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5002533..5002688 | 600..755 | 100 | -> | Minus |
arm_2R | 5002744..5002835 | 508..599 | 100 | -> | Minus |
arm_2R | 5002889..5003165 | 231..507 | 100 | -> | Minus |
arm_2R | 5003224..5003440 | 13..230 | 98 | | Minus |
BO12987.5prime Sequence
880 bp (727 high quality bases) assembled on 2006-05-08
> BO12987.5prime
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTC
BO12987.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8069-PA | 1362 | Phax-RA | 1..786 | 95..880 | 3930 | 100 | Plus |
CG8069-PB | 1074 | Phax-RB | 1..498 | 383..880 | 2490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1533 | CG8069-RA | 1..860 | 21..880 | 4300 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 176..918 | 138..880 | 3715 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 1..119 | 21..139 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114449..9115183 | 138..872 | 3675 | 100 | Plus |
2R | 25286936 | 2R | 9114270..9114392 | 17..139 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:16:56 has no hits.
BO12987.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:53 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PA | 1..786 | 95..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:22 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8069-PA | 1..786 | 95..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:31 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..860 | 21..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:02 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..860 | 21..880 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:02 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114261..9114392 | 8..139 | 96 | -> | Plus |
2R | 9114451..9115189 | 140..880 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:31 Download gff for
BO12987.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5001766..5001897 | 8..139 | 96 | -> | Plus |
arm_2R | 5001956..5002694 | 140..880 | 99 | | Plus |
BO12987.complete Sequence
1471 bp assembled on 2006-10-11
GenBank Submission: FJ632640
> BO12987.complete
GAAGTTATCAGTCGACATGGTCACTCTGCCGCTCAGTGTTGCACAAACAG
CTGCACTTTGGGCGAAGATTTTCTCTCGACTCGCCATAAAAAAAATGATG
GAACTGCACGCAAATGACGTTGACCTGGAGGACGGCGAGCTATCGGAGAG
CGACGATGATGGCGTTTACACGCCGTTGCAGCGACCTGACGGTGCGGAGA
AGGTGGCCAGTCCCCTTACCACCTGCCATCAGATCCAGACTGCGTTAGAG
GACGAGTCACAAAGCAACAGCGACTCCTCGACTGCCGAATCCTCCGAGGA
CGGGTGCATCAAGAAGCTTCGTACGGAATCCACCGGACCCGACGGCCACA
AGAAGCGGAAAAAGCGCATTCGGCGCACGGTAATGCGGCGCGTTCCGCCC
ACGGATGCTGAAATGCAACCGAATCGAGCCCGTTTCAAGAAGTACAACGT
GTGGGCTTCTGCCCTGCAAGAGGATGCGCTCAGCGAGAATATGCGTGGCT
GCGACGTTACCCGAAGCGGTCGGGATCGAAATGTTGAAAACTACGACTTC
TCATTGCGATACCGGCTGAACGGCGAGAACACTCTAAAGCGACGACTCTC
AAACTCTTCGGAGGACGGCGGCGAATGCTCCCATCCAGCTCACAAGAGGG
GAAGACCTTCTAGTCGGCCCATCACCGGGAATCAACAGCGCGGTTTGGTC
AAGAGTAGAACGGGTCACCGGTCACGTCGTGGGACATCTTCGGCCAGCGG
ATCTTCCGATTTCTGCGAGCCCAGACACATTCTGGACTTAAACGAAGTGG
GTGAGAGAGATCCTTCGGATGTGGCTACCGAAATGGCCAGCAAACTGTAC
GAGGAAAAGGACGAATTACTTGTTCGAGTCGTGGAGGTTCTTGGCATAGA
TGTGTGCCTAGAGCTATACAAGGAAACTCAGCGCATTGAAGCCGATGGCG
GCATGATGATCAAAAACGGCATACGGAGACGTACACCAGGCGGGGTATTC
CTGTTCCTAATAAAGCACCACGATAACATCACTCAGGAGCAGCAGAAGCG
CATTTTTAGTGAGGATCGCCAGAGTCTGAGCAAGTCTCGAAAGCAGATCG
AAACGTTGATGCGGGACCGTAAGGTGGAAGAGTTGAAGAAGTGCCTCAGC
AAGCAGGTTACGGAACTGCCGACGTTAAATCAGCGCAAAGAGTACTACAT
GCAGGGCGACGAGCAAAGTGAAGATAAGCAACCGGGCAGCTTGTCCAACC
CGCCACCCTCCCCTGTTGGCGCTGAGCAGGAGCACGACAGCCCTGAGTAC
AGGACCCACGAGATCAATATAAATCTTGTGGACAATGCGGAACTTCCCTC
CACATCCAAAGCAGCGGCGGCGGCTCAGGGAGCGCCGCTGAAGGATTTAA
TCAGCTACGACCACGACTTTCTGGACGTCAATTGCGGGGACATGGACTTT
TTCGCAAGCTTTCTAGACCAT
BO12987.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1362 | CG8069-PA | 1..1359 | 95..1453 | 6795 | 100 | Plus |
Phax-RB | 1074 | CG8069-PB | 1..1071 | 383..1453 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-RA | 1533 | CG8069-RA | 1..1433 | 21..1453 | 7165 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 176..1491 | 138..1453 | 6580 | 100 | Plus |
Phax-RB | 1591 | CG8069-RB | 1..119 | 21..139 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9114449..9115183 | 138..872 | 3675 | 100 | Plus |
2R | 25286936 | 2R | 9115384..9115660 | 965..1241 | 1385 | 100 | Plus |
2R | 25286936 | 2R | 9115719..9115930 | 1242..1453 | 1060 | 100 | Plus |
2R | 25286936 | 2R | 9114270..9114392 | 17..139 | 615 | 100 | Plus |
2R | 25286936 | 2R | 9115238..9115330 | 872..964 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:00 has no hits.
BO12987.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:06 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1362 | 95..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:11 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1449 | 10..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:23 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1433 | 21..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:06 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1449 | 10..1459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:39 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Phax-RA | 1..1433 | 21..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:39 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9114270..9114392 | 17..139 | 100 | -> | Plus |
2R | 9114451..9115183 | 140..872 | 100 | -> | Plus |
2R | 9115239..9115330 | 873..964 | 100 | -> | Plus |
2R | 9115384..9115660 | 965..1241 | 100 | -> | Plus |
2R | 9115719..9115930 | 1242..1455 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:23 Download gff for
BO12987.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5001775..5001897 | 17..139 | 100 | -> | Plus |
arm_2R | 5001956..5002688 | 140..872 | 100 | -> | Plus |
arm_2R | 5002744..5002835 | 873..964 | 100 | -> | Plus |
arm_2R | 5002889..5003165 | 965..1241 | 100 | -> | Plus |
arm_2R | 5003224..5003435 | 1242..1455 | 99 | | Plus |
BO12987.pep Sequence
Translation from 16 to 1471
> BO12987.pep
MVTLPLSVAQTAALWAKIFSRLAIKKMMELHANDVDLEDGELSESDDDGV
YTPLQRPDGAEKVASPLTTCHQIQTALEDESQSNSDSSTAESSEDGCIKK
LRTESTGPDGHKKRKKRIRRTVMRRVPPTDAEMQPNRARFKKYNVWASAL
QEDALSENMRGCDVTRSGRDRNVENYDFSLRYRLNGENTLKRRLSNSSED
GGECSHPAHKRGRPSSRPITGNQQRGLVKSRTGHRSRRGTSSASGSSDFC
EPRHILDLNEVGERDPSDVATEMASKLYEEKDELLVRVVEVLGIDVCLEL
YKETQRIEADGGMMIKNGIRRRTPGGVFLFLIKHHDNITQEQQKRIFSED
RQSLSKSRKQIETLMRDRKVEELKKCLSKQVTELPTLNQRKEYYMQGDEQ
SEDKQPGSLSNPPPSPVGAEQEHDSPEYRTHEININLVDNAELPSTSKAA
AAAQGAPLKDLISYDHDFLDVNCGDMDFFASFLDH
BO12987.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Phax-PA | 453 | CG8069-PA | 1..453 | 27..479 | 2358 | 100 | Plus |
Phax-PB | 357 | CG8069-PB | 1..357 | 123..479 | 1862 | 100 | Plus |