Clone Sequence Records
BO12988.complete Sequence
538 bp assembled on 2010-02-09
GenBank Submission: FJ632641
> BO12988.complete
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCAAGCTTTCTAGACCAT
BO12988.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 507 | CG40045-PA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 504 | CG40045-PD | 1..501 | 17..520 | 2440 | 99.4 | Plus |
CG40045-RC | 399 | CG40045-PC | 42..396 | 166..520 | 1775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 17..520 | 2440 | 99.4 | Plus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 61..520 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 166..520 | 1775 | 100 | Plus |
3L | 28110227 | 3L | 24030752..24030857 | 60..165 | 530 | 100 | Plus |
3R | 32079331 | 3R | 13717609..13717904 | 447..152 | 310 | 73.6 | Minus |
3L | 28110227 | 3L | 24028678..24028723 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:24:21 has no hits.
BO12988.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:12 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:00 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 158..661 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:37 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 164..667 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:21 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 158..661 | 17..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:54 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 164..667 | 17..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:54 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028678..24028723 | 17..62 | 100 | -> | Plus |
3L | 24030755..24030857 | 63..165 | 100 | -> | Plus |
3L | 24035432..24035786 | 166..522 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:37 Download gff for
BO12988.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021778..24021823 | 17..62 | 100 | -> | Plus |
arm_3L | 24023855..24023957 | 63..165 | 100 | -> | Plus |
arm_3L | 24028532..24028886 | 166..522 | 99 | | Plus |
BO12988.3prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12988.3prime
ATGGTCTAGAAAGCTTGCCGAGCACTCCTCCTGACTTTTTCTGACGCAGC
GAGCAACTTTGCGTTTAAAGTCGGTATAGGATTCTCGCCATTCCTTGGCA
GCATCTACGTTTGCTGGAGACTCATCGTTCGGATCGGCCAGCATTGATAT
TACAGATATCAAGATAGTCTCCACTGTATGCACGGGTAACCAGCGCTCCG
ATGCTTTTTCGTAGCCCCATTTATCGTCTCCAGGCTCATGTAAAATAGAA
ATACAGACATCTCCATTCTTCTCAATATTTGGGTGCCAAATTTCTGTAAC
AAACTTCATTCGAGGAGGACGCAACGGATATTCTTTAGGAAAGTAAAGAT
GAGCTTTAAAGAATCCTCCTTCGTACAGTGTATCTGGCGGTCCAATTATT
AAAACTTCCCAGCGAAATATATCATTCTCATCAATTAAACCAGCGGAGAA
TCCTTCCACTGGATTCTTGTTTAGTTCTGCCAATTGTTTTTTTAACAGTA
AAGATGACTGAAGTTCAGACATGTCGACTGATAACT
BO12988.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 507 | CG40045-RA | 1..504 | 522..19 | 2520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 522..19 | 2520 | 100 | Minus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 522..19 | 2465 | 99.4 | Minus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 478..19 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 373..19 | 1775 | 100 | Minus |
3L | 28110227 | 3L | 24030752..24030857 | 479..374 | 530 | 100 | Minus |
3R | 32079331 | 3R | 13717609..13717904 | 92..387 | 310 | 73.6 | Plus |
3L | 28110227 | 3L | 24028678..24028723 | 522..477 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:10:26 has no hits.
BO12988.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:09 Download gff for
BO12988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-PA | 1..507 | 16..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:54 Download gff for
BO12988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 13..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:48 Download gff for
BO12988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 13..525 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:48 Download gff for
BO12988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028676..24028723 | 477..525 | 97 | -> | Minus |
3L | 24030755..24030857 | 374..476 | 100 | -> | Minus |
3L | 24035432..24035792 | 13..373 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:54 Download gff for
BO12988.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021776..24021823 | 477..525 | 97 | -> | Minus |
arm_3L | 24023855..24023957 | 374..476 | 100 | -> | Minus |
arm_3L | 24028532..24028892 | 13..373 | 99 | | Minus |
BO12988.5prime Sequence
536 bp (535 high quality bases) assembled on 2006-05-08
> BO12988.5prime
GAAGTTATCAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAA
AACAATTGGCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGT
TTAATTGATGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACC
GCCAGATACACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTC
CTAAAGAATATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATT
TGGCACCCAAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACA
TGAGCCTGGAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGT
TACCCGTGCATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTG
GCCGATCCGAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATG
GCGAGAATCCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAA
AAAGTCAGGAGGAGTGCTCGGCAAGCTTTCTAGACC
BO12988.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 507 | CG40045-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 17..520 | 2520 | 100 | Plus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 17..520 | 2465 | 99.4 | Plus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 61..520 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:16:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 166..520 | 1775 | 100 | Plus |
3L | 28110227 | 3L | 24030752..24030857 | 60..165 | 530 | 100 | Plus |
3R | 32079331 | 3R | 13717609..13717904 | 447..152 | 310 | 73.6 | Minus |
3L | 28110227 | 3L | 24028678..24028723 | 17..62 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:16:17 has no hits.
BO12988.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:10 Download gff for
BO12988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-PA | 1..507 | 17..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:23 Download gff for
BO12988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 14..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:38:17 Download gff for
BO12988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 162..673 | 14..526 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:38:17 Download gff for
BO12988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028676..24028723 | 14..62 | 97 | -> | Plus |
3L | 24030755..24030857 | 63..165 | 100 | -> | Plus |
3L | 24035432..24035792 | 166..526 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:23 Download gff for
BO12988.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021776..24021823 | 14..62 | 97 | -> | Plus |
arm_3L | 24023855..24023957 | 63..165 | 100 | -> | Plus |
arm_3L | 24028532..24028892 | 166..526 | 99 | | Plus |
BO12988.pep Sequence
Translation from 16 to 538
> BO12988.pep
MSELQSSLLLKKQLAELNKNPVEGFSAGLIDENDIFRWEVLIIGPPDTLY
EGGFFKAHLYFPKEYPLRPPRMKFVTEIWHPNIEKNGDVCISILHEPGDD
KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRESYT
DFKRKVARCVRKSQEECSASFLDH
BO12988.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-PA | 168 | CG40045-PA | 1..168 | 1..168 | 903 | 100 | Plus |
CG40045-PD | 167 | CG40045-PD | 1..167 | 1..168 | 884 | 99.4 | Plus |
Ubc87F-PA | 168 | CG9602-PA | 1..166 | 1..166 | 772 | 83.1 | Plus |
CG40045-PC | 132 | CG40045-PC | 15..132 | 51..168 | 649 | 100 | Plus |
CG40045-PB | 97 | CG40045-PB | 1..97 | 72..168 | 527 | 100 | Plus |