Clone Sequence Records
BO12989.3prime Sequence
755 bp (670 high quality bases) assembled on 2006-05-08
> BO12989.3prime
ATGGTCTAGAAAGCTTGCTTGGCGAAAACGGAGGACCGAAGCGGGCAGGT
AGGAGCTACCAGGAGCCGAGGGAGCGGCCACTTGCTGGGCAGCTGGCTGA
GATGCGAAGTTCAGGACGGGAGCCACACCTCCGTTCAGAATGGTGGAGGA
TCCTCCCAGCTGATCGTACTGCGACTGGATGGCCTGCTGGGCGTTGAGGG
CATCCTGGTTGGTGCGGTATTTCACGAAGTGCACCTCGGGCTTGTTGTTG
TTGTTGTTGCGGATAGAGTTCAGCTTGTTGCTCAGATCTCCGATATCAGC
CTGCTTGTTCAGGACATAGATGGCGGTCTCCTGCTGTCCAGCCTGCTTGG
CCAGAGCCACAGCAGCGTTCTCCAGGCCAGTGTTCTCGGGTCCCTTGATG
AAGATCACACGCAGGGCCTTGTTCAAGGAGGCGGATACCTGCTGAGAGCC
AGCTGGTTCAACGAAGTCCTGCTCATCAGCGGTGTACGTGAAGAACTCCT
TTTGGAGCTCGGCCTGGGGAGCCGCATAGTTGGTGGCAACCGCGGAAGGA
GCAGCTTCGGGGGCAGAAGCAGGTGCATAGGTCTCGGCGGGGGCATCCTG
GCTAGCGGCCACGGAAGGAGAGTAACTGGGTCCGGAAGGAGCAAAGGATG
CGACAGCTGGGGCAGAAGCTGCAGGCTGGTAGTTATAGCCACTTCTGGCA
CTAACGGCAGCCACAAGGCACAGAGCATTAAGGACGCGCATGTCGACTGA
TAACT
BO12989.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31080-PA | 726 | CG31080-RA | 1..723 | 741..19 | 3590 | 99.8 | Minus |
CG6460-PA | 744 | CG6460-RA | 398..545 | 359..212 | 540 | 94.5 | Minus |
CG5471-PA | 924 | CG5471-RA | 506..653 | 359..212 | 515 | 93.9 | Minus |
CG5468-PA | 867 | CG5468-RA | 538..677 | 351..212 | 425 | 92.1 | Minus |
CG6478-PA | 861 | CG6478-RA | 473..593 | 404..284 | 355 | 91.7 | Minus |
CG6447-PB | 840 | CG6447-RB | 508..575 | 351..284 | 240 | 94.1 | Minus |
CG6447-PA | 858 | CG6447-RA | 526..593 | 351..284 | 240 | 94.1 | Minus |
CG5476-PA | 930 | CG5476-RA | 589..656 | 351..284 | 240 | 94.1 | Minus |
CG6478-PA | 861 | CG6478-RA | 613..665 | 264..212 | 215 | 96.2 | Minus |
CG6447-PB | 840 | CG6447-RB | 595..647 | 264..212 | 190 | 94.3 | Minus |
CG6447-PA | 858 | CG6447-RA | 613..665 | 264..212 | 190 | 94.3 | Minus |
CG5468-PA | 867 | CG5468-RA | 464..524 | 425..365 | 180 | 91.8 | Minus |
CG6452-PA | 690 | CG6452-RA | 275..340 | 404..339 | 180 | 90.9 | Minus |
CG5476-PA | 930 | CG5476-RA | 690..728 | 250..212 | 145 | 94.8 | Minus |
CG6447-PB | 840 | CG6447-RB | 455..497 | 404..362 | 140 | 93 | Minus |
CG6447-PA | 858 | CG6447-RA | 473..515 | 404..362 | 140 | 93 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..785 | 741..19 | 3600 | 99.9 | Minus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 546..149 | 955 | 83 | Minus |
TwdlM-RA | 1030 | CG5468-RA | 425..834 | 513..104 | 950 | 82.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634579 | 726..19 | 3540 | 100 | Minus |
3R | 32079331 | 3R | 26630175..26630572 | 546..149 | 955 | 82.7 | Minus |
3R | 32079331 | 3R | 26628099..26628484 | 148..533 | 925 | 82.6 | Plus |
3R | 32079331 | 3R | 26619619..26620028 | 513..104 | 910 | 81.5 | Minus |
3R | 32079331 | 3R | 26624766..26625172 | 104..510 | 865 | 80.8 | Plus |
3R | 32079331 | 3R | 26622698..26623062 | 146..510 | 850 | 82.2 | Plus |
3R | 32079331 | 3R | 26632360..26632724 | 510..146 | 835 | 81.9 | Minus |
3R | 32079331 | 3R | 26626167..26626453 | 148..434 | 520 | 78.7 | Plus |
3R | 32079331 | 3R | 26656933..26657251 | 425..107 | 305 | 73 | Minus |
3R | 32079331 | 3R | 26620800..26621057 | 148..405 | 270 | 73.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:38:29 has no hits.
BO12989.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:55 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..726 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:24 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..726 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:36 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..790 | 13..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:01 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..790 | 13..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:01 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634584 | 13..726 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:36 Download gff for
BO12989.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460306 | 13..726 | 99 | | Minus |
BO12989.5prime Sequence
755 bp (700 high quality bases) assembled on 2006-05-08
> BO12989.5prime
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAAGCAAGCTTTCT
AGACC
BO12989.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31080-PA | 726 | CG31080-RA | 1..723 | 17..739 | 3615 | 100 | Plus |
CG6460-PA | 744 | CG6460-RA | 398..545 | 399..546 | 540 | 94.5 | Plus |
CG5471-PA | 924 | CG5471-RA | 506..653 | 399..546 | 515 | 93.9 | Plus |
CG5468-PA | 867 | CG5468-RA | 538..677 | 407..546 | 425 | 92.1 | Plus |
CG6478-PA | 861 | CG6478-RA | 473..593 | 354..474 | 355 | 91.7 | Plus |
CG6447-PB | 840 | CG6447-RB | 508..575 | 407..474 | 240 | 94.1 | Plus |
CG6447-PA | 858 | CG6447-RA | 526..593 | 407..474 | 240 | 94.1 | Plus |
CG5476-PA | 930 | CG5476-RA | 589..656 | 407..474 | 240 | 94.1 | Plus |
CG6478-PA | 861 | CG6478-RA | 613..665 | 494..546 | 215 | 96.2 | Plus |
CG6447-PB | 840 | CG6447-RB | 595..647 | 494..546 | 190 | 94.3 | Plus |
CG6447-PA | 858 | CG6447-RA | 613..665 | 494..546 | 190 | 94.3 | Plus |
CG5468-PA | 867 | CG5468-RA | 464..524 | 333..393 | 180 | 91.8 | Plus |
CG6452-PA | 690 | CG6452-RA | 275..340 | 354..419 | 180 | 90.9 | Plus |
CG5476-PA | 930 | CG5476-RA | 690..728 | 508..546 | 145 | 94.8 | Plus |
CG6447-PB | 840 | CG6447-RB | 455..497 | 354..396 | 140 | 93 | Plus |
CG6447-PA | 858 | CG6447-RA | 473..515 | 354..396 | 140 | 93 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..785 | 17..739 | 3615 | 100 | Plus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 212..609 | 955 | 83 | Plus |
TwdlM-RA | 1030 | CG5468-RA | 425..834 | 245..654 | 950 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634579 | 32..739 | 3540 | 100 | Plus |
3R | 32079331 | 3R | 26630175..26630572 | 212..609 | 955 | 82.7 | Plus |
3R | 32079331 | 3R | 26628099..26628484 | 610..225 | 925 | 82.6 | Minus |
3R | 32079331 | 3R | 26619619..26620028 | 245..654 | 910 | 81.5 | Plus |
3R | 32079331 | 3R | 26624766..26625172 | 654..248 | 865 | 80.8 | Minus |
3R | 32079331 | 3R | 26622698..26623062 | 612..248 | 850 | 82.2 | Minus |
3R | 32079331 | 3R | 26632360..26632724 | 248..612 | 835 | 81.9 | Plus |
3R | 32079331 | 3R | 26626167..26626453 | 610..324 | 520 | 78.7 | Minus |
3R | 32079331 | 3R | 26656933..26657251 | 333..651 | 305 | 73 | Plus |
3R | 32079331 | 3R | 26620800..26621057 | 610..353 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:10:02 has no hits.
BO12989.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:56 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:26 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31080-PA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:27 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..790 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:01 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 58..790 | 12..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:01 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634584 | 32..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:27 Download gff for
BO12989.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460306 | 32..745 | 99 | | Plus |
BO12989.complete Sequence
757 bp assembled on 2006-10-11
GenBank Submission: FJ638711
> BO12989.complete
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAAGCAAGCTTTCT
AGACCAT
BO12989.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 726 | CG31080-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
TwdlJ-RB | 825 | CG5471-PB | 220..617 | 212..609 | 955 | 82.7 | Plus |
TwdlK-RA | 744 | CG6460-PA | 224..609 | 225..610 | 925 | 82.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-RA | 920 | CG31080-RA | 63..785 | 17..739 | 3615 | 100 | Plus |
TwdlJ-RB | 908 | CG5471-RB | 258..655 | 212..609 | 955 | 82.7 | Plus |
TwdlK-RA | 840 | CG6460-RA | 241..626 | 225..610 | 925 | 82.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26633872..26634579 | 32..739 | 3540 | 100 | Plus |
3R | 32079331 | 3R | 26630175..26630572 | 212..609 | 955 | 82.7 | Plus |
3R | 32079331 | 3R | 26628099..26628484 | 610..225 | 925 | 82.6 | Minus |
3R | 32079331 | 3R | 26619619..26620028 | 245..654 | 910 | 81.5 | Plus |
3R | 32079331 | 3R | 26624766..26625172 | 654..248 | 865 | 80.8 | Minus |
3R | 32079331 | 3R | 26622698..26623062 | 612..248 | 850 | 82.2 | Minus |
3R | 32079331 | 3R | 26632360..26632724 | 248..612 | 835 | 81.9 | Plus |
3R | 32079331 | 3R | 26626167..26626453 | 610..324 | 520 | 78.7 | Minus |
3R | 32079331 | 3R | 26656933..26657251 | 333..651 | 305 | 73 | Plus |
3R | 32079331 | 3R | 26620800..26621057 | 610..353 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:06:46 has no hits.
BO12989.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:07 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 1..726 | 17..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:13 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 56..788 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:37 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..785 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:08 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 56..788 | 12..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:08 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlH-RA | 63..785 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:08 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26633872..26634579 | 32..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:37 Download gff for
BO12989.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22459594..22460301 | 32..741 | 99 | | Plus |
BO12989.pep Sequence
Translation from 16 to 757
> BO12989.pep
MRVLIALCLVAAVSARSGYNYQPAASAPAVASFAPSGPSYSPSVAASQDA
PAETYAPASAPEAAPSAVATNYAAPQAELQKEFFTYTADEQDFVEPAGSQ
QVSASLNKALRVIFIKGPENTGLENAAVALAKQAGQQETAIYVLNKQADI
GDLSNKLNSIRNNNNNKPEVHFVKYRTNQDALNAQQAIQSQYDQLGGSST
ILNGGVAPVLNFASQPAAQQVAAPSAPGSSYLPASVLRFRQASFLDH
BO12989.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlH-PA | 241 | CG31080-PA | 1..241 | 1..241 | 1200 | 100 | Plus |
TwdlK-PA | 247 | CG6460-PA | 1..243 | 1..238 | 781 | 65.6 | Plus |
TwdlJ-PB | 274 | CG5471-PB | 6..270 | 5..238 | 755 | 61.3 | Plus |
TwdlM-PA | 288 | CG5468-PA | 1..286 | 1..238 | 655 | 53.3 | Plus |
TwdlL-PB | 279 | CG6447-PB | 101..278 | 62..240 | 615 | 69.8 | Plus |