Clone BO12989 Report

Search the DGRC for BO12989

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlH-RA
Protein status:BO12989.pep: validated full length
Sequenced Size:757

Clone Sequence Records

BO12989.3prime Sequence

755 bp (670 high quality bases) assembled on 2006-05-08

> BO12989.3prime
ATGGTCTAGAAAGCTTGCTTGGCGAAAACGGAGGACCGAAGCGGGCAGGT
AGGAGCTACCAGGAGCCGAGGGAGCGGCCACTTGCTGGGCAGCTGGCTGA
GATGCGAAGTTCAGGACGGGAGCCACACCTCCGTTCAGAATGGTGGAGGA
TCCTCCCAGCTGATCGTACTGCGACTGGATGGCCTGCTGGGCGTTGAGGG
CATCCTGGTTGGTGCGGTATTTCACGAAGTGCACCTCGGGCTTGTTGTTG
TTGTTGTTGCGGATAGAGTTCAGCTTGTTGCTCAGATCTCCGATATCAGC
CTGCTTGTTCAGGACATAGATGGCGGTCTCCTGCTGTCCAGCCTGCTTGG
CCAGAGCCACAGCAGCGTTCTCCAGGCCAGTGTTCTCGGGTCCCTTGATG
AAGATCACACGCAGGGCCTTGTTCAAGGAGGCGGATACCTGCTGAGAGCC
AGCTGGTTCAACGAAGTCCTGCTCATCAGCGGTGTACGTGAAGAACTCCT
TTTGGAGCTCGGCCTGGGGAGCCGCATAGTTGGTGGCAACCGCGGAAGGA
GCAGCTTCGGGGGCAGAAGCAGGTGCATAGGTCTCGGCGGGGGCATCCTG
GCTAGCGGCCACGGAAGGAGAGTAACTGGGTCCGGAAGGAGCAAAGGATG
CGACAGCTGGGGCAGAAGCTGCAGGCTGGTAGTTATAGCCACTTCTGGCA
CTAACGGCAGCCACAAGGCACAGAGCATTAAGGACGCGCATGTCGACTGA
TAACT

BO12989.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31080-PA 726 CG31080-RA 1..723 741..19 3590 99.8 Minus
CG6460-PA 744 CG6460-RA 398..545 359..212 540 94.5 Minus
CG5471-PA 924 CG5471-RA 506..653 359..212 515 93.9 Minus
CG5468-PA 867 CG5468-RA 538..677 351..212 425 92.1 Minus
CG6478-PA 861 CG6478-RA 473..593 404..284 355 91.7 Minus
CG6447-PB 840 CG6447-RB 508..575 351..284 240 94.1 Minus
CG6447-PA 858 CG6447-RA 526..593 351..284 240 94.1 Minus
CG5476-PA 930 CG5476-RA 589..656 351..284 240 94.1 Minus
CG6478-PA 861 CG6478-RA 613..665 264..212 215 96.2 Minus
CG6447-PB 840 CG6447-RB 595..647 264..212 190 94.3 Minus
CG6447-PA 858 CG6447-RA 613..665 264..212 190 94.3 Minus
CG5468-PA 867 CG5468-RA 464..524 425..365 180 91.8 Minus
CG6452-PA 690 CG6452-RA 275..340 404..339 180 90.9 Minus
CG5476-PA 930 CG5476-RA 690..728 250..212 145 94.8 Minus
CG6447-PB 840 CG6447-RB 455..497 404..362 140 93 Minus
CG6447-PA 858 CG6447-RA 473..515 404..362 140 93 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..785 741..19 3600 99.9 Minus
TwdlJ-RB 908 CG5471-RB 258..655 546..149 955 83 Minus
TwdlM-RA 1030 CG5468-RA 425..834 513..104 950 82.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634579 726..19 3540 100 Minus
3R 32079331 3R 26630175..26630572 546..149 955 82.7 Minus
3R 32079331 3R 26628099..26628484 148..533 925 82.6 Plus
3R 32079331 3R 26619619..26620028 513..104 910 81.5 Minus
3R 32079331 3R 26624766..26625172 104..510 865 80.8 Plus
3R 32079331 3R 26622698..26623062 146..510 850 82.2 Plus
3R 32079331 3R 26632360..26632724 510..146 835 81.9 Minus
3R 32079331 3R 26626167..26626453 148..434 520 78.7 Plus
3R 32079331 3R 26656933..26657251 425..107 305 73 Minus
3R 32079331 3R 26620800..26621057 148..405 270 73.6 Plus
Blast to na_te.dros performed on 2015-02-11 16:38:29 has no hits.

BO12989.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:55 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..726 15..741 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:24 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..726 15..741 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:36 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..790 13..746 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:01 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..790 13..746 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:01 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634584 13..726 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:36 Download gff for BO12989.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460306 13..726 99   Minus

BO12989.5prime Sequence

755 bp (700 high quality bases) assembled on 2006-05-08

> BO12989.5prime
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAAGCAAGCTTTCT
AGACC

BO12989.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31080-PA 726 CG31080-RA 1..723 17..739 3615 100 Plus
CG6460-PA 744 CG6460-RA 398..545 399..546 540 94.5 Plus
CG5471-PA 924 CG5471-RA 506..653 399..546 515 93.9 Plus
CG5468-PA 867 CG5468-RA 538..677 407..546 425 92.1 Plus
CG6478-PA 861 CG6478-RA 473..593 354..474 355 91.7 Plus
CG6447-PB 840 CG6447-RB 508..575 407..474 240 94.1 Plus
CG6447-PA 858 CG6447-RA 526..593 407..474 240 94.1 Plus
CG5476-PA 930 CG5476-RA 589..656 407..474 240 94.1 Plus
CG6478-PA 861 CG6478-RA 613..665 494..546 215 96.2 Plus
CG6447-PB 840 CG6447-RB 595..647 494..546 190 94.3 Plus
CG6447-PA 858 CG6447-RA 613..665 494..546 190 94.3 Plus
CG5468-PA 867 CG5468-RA 464..524 333..393 180 91.8 Plus
CG6452-PA 690 CG6452-RA 275..340 354..419 180 90.9 Plus
CG5476-PA 930 CG5476-RA 690..728 508..546 145 94.8 Plus
CG6447-PB 840 CG6447-RB 455..497 354..396 140 93 Plus
CG6447-PA 858 CG6447-RA 473..515 354..396 140 93 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..785 17..739 3615 100 Plus
TwdlJ-RB 908 CG5471-RB 258..655 212..609 955 83 Plus
TwdlM-RA 1030 CG5468-RA 425..834 245..654 950 82.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634579 32..739 3540 100 Plus
3R 32079331 3R 26630175..26630572 212..609 955 82.7 Plus
3R 32079331 3R 26628099..26628484 610..225 925 82.6 Minus
3R 32079331 3R 26619619..26620028 245..654 910 81.5 Plus
3R 32079331 3R 26624766..26625172 654..248 865 80.8 Minus
3R 32079331 3R 26622698..26623062 612..248 850 82.2 Minus
3R 32079331 3R 26632360..26632724 248..612 835 81.9 Plus
3R 32079331 3R 26626167..26626453 610..324 520 78.7 Minus
3R 32079331 3R 26656933..26657251 333..651 305 73 Plus
3R 32079331 3R 26620800..26621057 610..353 270 73.6 Minus
Blast to na_te.dros performed on 2015-02-12 11:10:02 has no hits.

BO12989.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:56 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:26 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31080-PA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:27 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..790 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:01 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 58..790 12..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:01 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634584 32..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:27 Download gff for BO12989.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460306 32..745 99   Plus

BO12989.complete Sequence

757 bp assembled on 2006-10-11

GenBank Submission: FJ638711

> BO12989.complete
GAAGTTATCAGTCGACATGCGCGTCCTTATTGCTCTGTGCCTTGTGGCTG
CCGTTAGTGCCAGAAGTGGCTATAACTACCAGCCTGCAGCTTCTGCCCCA
GCTGTCGCATCCTTTGCTCCTTCCGGACCCAGTTACTCTCCTTCCGTGGC
CGCTAGCCAGGATGCCCCCGCCGAGACCTATGCACCTGCTTCTGCCCCCG
AAGCTGCTCCTTCCGCGGTTGCCACCAACTATGCGGCTCCCCAGGCCGAG
CTCCAAAAGGAGTTCTTCACGTACACCGCTGATGAGCAGGACTTCGTTGA
ACCAGCTGGCTCTCAGCAGGTATCCGCCTCCTTGAACAAGGCCCTGCGTG
TGATCTTCATCAAGGGACCCGAGAACACTGGCCTGGAGAACGCTGCTGTG
GCTCTGGCCAAGCAGGCTGGACAGCAGGAGACCGCCATCTATGTCCTGAA
CAAGCAGGCTGATATCGGAGATCTGAGCAACAAGCTGAACTCTATCCGCA
ACAACAACAACAACAAGCCCGAGGTGCACTTCGTGAAATACCGCACCAAC
CAGGATGCCCTCAACGCCCAGCAGGCCATCCAGTCGCAGTACGATCAGCT
GGGAGGATCCTCCACCATTCTGAACGGAGGTGTGGCTCCCGTCCTGAACT
TCGCATCTCAGCCAGCTGCCCAGCAAGTGGCCGCTCCCTCGGCTCCTGGT
AGCTCCTACCTGCCCGCTTCGGTCCTCCGTTTTCGCCAAGCAAGCTTTCT
AGACCAT

BO12989.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 726 CG31080-PA 1..723 17..739 3615 100 Plus
TwdlJ-RB 825 CG5471-PB 220..617 212..609 955 82.7 Plus
TwdlK-RA 744 CG6460-PA 224..609 225..610 925 82.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-RA 920 CG31080-RA 63..785 17..739 3615 100 Plus
TwdlJ-RB 908 CG5471-RB 258..655 212..609 955 82.7 Plus
TwdlK-RA 840 CG6460-RA 241..626 225..610 925 82.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26633872..26634579 32..739 3540 100 Plus
3R 32079331 3R 26630175..26630572 212..609 955 82.7 Plus
3R 32079331 3R 26628099..26628484 610..225 925 82.6 Minus
3R 32079331 3R 26619619..26620028 245..654 910 81.5 Plus
3R 32079331 3R 26624766..26625172 654..248 865 80.8 Minus
3R 32079331 3R 26622698..26623062 612..248 850 82.2 Minus
3R 32079331 3R 26632360..26632724 248..612 835 81.9 Plus
3R 32079331 3R 26626167..26626453 610..324 520 78.7 Minus
3R 32079331 3R 26656933..26657251 333..651 305 73 Plus
3R 32079331 3R 26620800..26621057 610..353 270 73.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:06:46 has no hits.

BO12989.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:07 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 1..726 17..743 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:13 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 56..788 12..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:37 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..785 17..741 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:08 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 56..788 12..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:08 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlH-RA 63..785 17..741 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:08 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26633872..26634579 32..741 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:37 Download gff for BO12989.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22459594..22460301 32..741 99   Plus

BO12989.pep Sequence

Translation from 16 to 757

> BO12989.pep
MRVLIALCLVAAVSARSGYNYQPAASAPAVASFAPSGPSYSPSVAASQDA
PAETYAPASAPEAAPSAVATNYAAPQAELQKEFFTYTADEQDFVEPAGSQ
QVSASLNKALRVIFIKGPENTGLENAAVALAKQAGQQETAIYVLNKQADI
GDLSNKLNSIRNNNNNKPEVHFVKYRTNQDALNAQQAIQSQYDQLGGSST
ILNGGVAPVLNFASQPAAQQVAAPSAPGSSYLPASVLRFRQASFLDH

BO12989.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:47
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlH-PA 241 CG31080-PA 1..241 1..241 1200 100 Plus
TwdlK-PA 247 CG6460-PA 1..243 1..238 781 65.6 Plus
TwdlJ-PB 274 CG5471-PB 6..270 5..238 755 61.3 Plus
TwdlM-PA 288 CG5468-PA 1..286 1..238 655 53.3 Plus
TwdlL-PB 279 CG6447-PB 101..278 62..240 615 69.8 Plus