Clone Sequence Records
BO12990.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO12990.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGGCCTTGACTGCCTGCTGAGAGGTCT
TGTAGACGAAGCTGTGGGCCTCATCGTAGTAGGGATTGGTAGCATCACGA
ACGCGTTCCATCCACTTGGCCACCTTGGGGAATTGCTTCTCATTTACGTT
GTACTGGCAGAGCTTCATCTGATTAATTTCTGAAGACCCGAAGATGTCTG
CCACGGTAAGTTTGTCGCCGACTAAGAAGTCCTTTTCCAGCCAGAGGCGT
TCCAGTAGACCCAAATTACTCTCCACATCCTTGATTAGCTTCTTGACAGA
CTCTGGCTTGGGAGCCGGCGCCAGTCCCTTTGCCGGAAGAAGCCACACCT
GACGGAAGAACAGGGAGCAGACCAAGCGGACATTGAAATGCTGCCACTCG
AGGAACTCGTCCACCCGCGCGCGTTCCTCCAAGGTTTTGGGGTACAGCTG
TTCACTGAAGACTCCCTTGTCCGCGAGATATCGCACTATGGAGACACTCT
CGCCCAACTGAAATTTACCATCCACGATGGCCGGCACCTTTTGGAACCGA
TTTATACTGCGATATTCGTCGGTCAATTGCTCCTGTTTTCGCAGGGCAAC
CGGGCAGTCTTCAAATGGGGTCTTGCCCAATTTCATAGCAATCCAGAGGG
CGCGGGATGGCTGCGATAGGAAATCGTAATAATACTTAATAGCCTTCGAC
ATGTCGACTGATAACT
BO12990.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30000-PA | 687 | CG30000-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 100..783 | 702..19 | 3420 | 100 | Minus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 606..101 | 335 | 72.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 482..165 | 1590 | 100 | Minus |
2R | 25286936 | 2R | 9606825..9606970 | 164..19 | 730 | 100 | Minus |
2R | 25286936 | 2R | 9606087..9606204 | 702..585 | 590 | 100 | Minus |
2R | 25286936 | 2R | 9606280..9606382 | 584..482 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:15:35 has no hits.
BO12990.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:57 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 1..687 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:27 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 1..687 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:37 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 19..702 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:15 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 19..702 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:15 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606087..9606204 | 585..702 | 100 | -> | Minus |
2R | 9606280..9606382 | 482..584 | 100 | -> | Minus |
2R | 9606447..9606763 | 165..481 | 100 | -> | Minus |
2R | 9606825..9606970 | 19..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:37 Download gff for
BO12990.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493592..5493709 | 585..702 | 100 | -> | Minus |
arm_2R | 5493785..5493887 | 482..584 | 100 | -> | Minus |
arm_2R | 5493952..5494268 | 165..481 | 100 | -> | Minus |
arm_2R | 5494330..5494475 | 19..164 | 100 | | Minus |
BO12990.5prime Sequence
716 bp (709 high quality bases) assembled on 2006-05-08
> BO12990.5prime
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
GCAAGCTTTCTAAACC
BO12990.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30000-PA | 687 | CG30000-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 100..783 | 17..700 | 3420 | 100 | Plus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 113..618 | 335 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 237..554 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 9606825..9606970 | 555..700 | 730 | 100 | Plus |
2R | 25286936 | 2R | 9606087..9606204 | 17..134 | 590 | 100 | Plus |
2R | 25286936 | 2R | 9606280..9606382 | 135..237 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:00:34 has no hits.
BO12990.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:58 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:28 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:14 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:55 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 17..700 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:55 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606087..9606204 | 17..134 | 100 | -> | Plus |
2R | 9606280..9606382 | 135..237 | 100 | -> | Plus |
2R | 9606447..9606763 | 238..554 | 100 | -> | Plus |
2R | 9606825..9606970 | 555..700 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:14 Download gff for
BO12990.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493592..5493709 | 17..134 | 100 | -> | Plus |
arm_2R | 5493785..5493887 | 135..237 | 100 | -> | Plus |
arm_2R | 5493952..5494268 | 238..554 | 100 | -> | Plus |
arm_2R | 5494330..5494475 | 555..700 | 100 | | Plus |
BO12990.complete Sequence
718 bp assembled on 2006-10-11
GenBank Submission: FJ632642
> BO12990.complete
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
GCAAGCTTTCTAGACCAT
BO12990.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 687 | CG30000-PA | 1..684 | 17..700 | 3420 | 100 | Plus |
GstT2-RA | 687 | CG30005-PA | 97..602 | 113..618 | 295 | 70.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-RA | 997 | CG30000-RA | 100..783 | 17..700 | 3420 | 100 | Plus |
GstT2-RA | 887 | CG30005-RA | 172..677 | 113..618 | 295 | 70.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9606446..9606763 | 237..554 | 1590 | 100 | Plus |
2R | 25286936 | 2R | 9606825..9606970 | 555..700 | 730 | 100 | Plus |
2R | 25286936 | 2R | 9606087..9606204 | 17..134 | 590 | 100 | Plus |
2R | 25286936 | 2R | 9606280..9606382 | 135..237 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:21:25 has no hits.
BO12990.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:08 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:14 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 98..781 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:51 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:09 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30000-RA | 98..781 | 17..700 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:57 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstT1-RA | 100..783 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:57 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9606087..9606204 | 17..134 | 100 | -> | Plus |
2R | 9606280..9606382 | 135..237 | 100 | -> | Plus |
2R | 9606447..9606763 | 238..554 | 100 | -> | Plus |
2R | 9606825..9606970 | 555..702 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:51 Download gff for
BO12990.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5493592..5493709 | 17..134 | 100 | -> | Plus |
arm_2R | 5493785..5493887 | 135..237 | 100 | -> | Plus |
arm_2R | 5493952..5494268 | 238..554 | 100 | -> | Plus |
arm_2R | 5494330..5494475 | 555..702 | 98 | | Plus |
BO12990.pep Sequence
Translation from 16 to 718
> BO12990.pep
MSKAIKYYYDFLSQPSRALWIAMKLGKTPFEDCPVALRKQEQLTDEYRSI
NRFQKVPAIVDGKFQLGESVSIVRYLADKGVFSEQLYPKTLEERARVDEF
LEWQHFNVRLVCSLFFRQVWLLPAKGLAPAPKPESVKKLIKDVESNLGLL
ERLWLEKDFLVGDKLTVADIFGSSEINQMKLCQYNVNEKQFPKVAKWMER
VRDATNPYYDEAHSFVYKTSQQAVKAKNASFLDH
BO12990.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstT1-PA | 228 | CG30000-PA | 1..228 | 1..228 | 1190 | 100 | Plus |
GstT2-PA | 228 | CG30005-PA | 1..227 | 1..227 | 828 | 65.6 | Plus |
GstT3-PC | 228 | CG1702-PC | 1..227 | 1..227 | 593 | 51.1 | Plus |
GstT3-PA | 228 | CG1702-PA | 1..227 | 1..227 | 593 | 51.1 | Plus |
GstT3-PB | 268 | CG1702-PB | 41..267 | 1..227 | 593 | 51.1 | Plus |