Clone BO12990 Report

Search the DGRC for BO12990

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG30000-RA
Protein status:BO12990.pep: validated full length
Sequenced Size:718

Clone Sequence Records

BO12990.3prime Sequence

716 bp (715 high quality bases) assembled on 2006-05-08

> BO12990.3prime
ATGGTCTAGAAAGCTTGCGTTTTTGGCCTTGACTGCCTGCTGAGAGGTCT
TGTAGACGAAGCTGTGGGCCTCATCGTAGTAGGGATTGGTAGCATCACGA
ACGCGTTCCATCCACTTGGCCACCTTGGGGAATTGCTTCTCATTTACGTT
GTACTGGCAGAGCTTCATCTGATTAATTTCTGAAGACCCGAAGATGTCTG
CCACGGTAAGTTTGTCGCCGACTAAGAAGTCCTTTTCCAGCCAGAGGCGT
TCCAGTAGACCCAAATTACTCTCCACATCCTTGATTAGCTTCTTGACAGA
CTCTGGCTTGGGAGCCGGCGCCAGTCCCTTTGCCGGAAGAAGCCACACCT
GACGGAAGAACAGGGAGCAGACCAAGCGGACATTGAAATGCTGCCACTCG
AGGAACTCGTCCACCCGCGCGCGTTCCTCCAAGGTTTTGGGGTACAGCTG
TTCACTGAAGACTCCCTTGTCCGCGAGATATCGCACTATGGAGACACTCT
CGCCCAACTGAAATTTACCATCCACGATGGCCGGCACCTTTTGGAACCGA
TTTATACTGCGATATTCGTCGGTCAATTGCTCCTGTTTTCGCAGGGCAAC
CGGGCAGTCTTCAAATGGGGTCTTGCCCAATTTCATAGCAATCCAGAGGG
CGCGGGATGGCTGCGATAGGAAATCGTAATAATACTTAATAGCCTTCGAC
ATGTCGACTGATAACT

BO12990.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG30000-PA 687 CG30000-RA 1..684 702..19 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:39
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 100..783 702..19 3420 100 Minus
GstT2-RA 887 CG30005-RA 172..677 606..101 335 72.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 482..165 1590 100 Minus
2R 25286936 2R 9606825..9606970 164..19 730 100 Minus
2R 25286936 2R 9606087..9606204 702..585 590 100 Minus
2R 25286936 2R 9606280..9606382 584..482 515 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:15:35 has no hits.

BO12990.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:57 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 1..687 16..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:27 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 1..687 16..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:37 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 19..702 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:15 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 19..702 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:15 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9606087..9606204 585..702 100 -> Minus
2R 9606280..9606382 482..584 100 -> Minus
2R 9606447..9606763 165..481 100 -> Minus
2R 9606825..9606970 19..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:37 Download gff for BO12990.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493592..5493709 585..702 100 -> Minus
arm_2R 5493785..5493887 482..584 100 -> Minus
arm_2R 5493952..5494268 165..481 100 -> Minus
arm_2R 5494330..5494475 19..164 100   Minus

BO12990.5prime Sequence

716 bp (709 high quality bases) assembled on 2006-05-08

> BO12990.5prime
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
GCAAGCTTTCTAAACC

BO12990.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30000-PA 687 CG30000-RA 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 100..783 17..700 3420 100 Plus
GstT2-RA 887 CG30005-RA 172..677 113..618 335 72.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 237..554 1590 100 Plus
2R 25286936 2R 9606825..9606970 555..700 730 100 Plus
2R 25286936 2R 9606087..9606204 17..134 590 100 Plus
2R 25286936 2R 9606280..9606382 135..237 515 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:00:34 has no hits.

BO12990.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:58 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 1..687 17..703 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:28 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30000-PA 1..687 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:14 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 17..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:55 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 17..700 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:55 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9606087..9606204 17..134 100 -> Plus
2R 9606280..9606382 135..237 100 -> Plus
2R 9606447..9606763 238..554 100 -> Plus
2R 9606825..9606970 555..700 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:14 Download gff for BO12990.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493592..5493709 17..134 100 -> Plus
arm_2R 5493785..5493887 135..237 100 -> Plus
arm_2R 5493952..5494268 238..554 100 -> Plus
arm_2R 5494330..5494475 555..700 100   Plus

BO12990.complete Sequence

718 bp assembled on 2006-10-11

GenBank Submission: FJ632642

> BO12990.complete
GAAGTTATCAGTCGACATGTCGAAGGCTATTAAGTATTATTACGATTTCC
TATCGCAGCCATCCCGCGCCCTCTGGATTGCTATGAAATTGGGCAAGACC
CCATTTGAAGACTGCCCGGTTGCCCTGCGAAAACAGGAGCAATTGACCGA
CGAATATCGCAGTATAAATCGGTTCCAAAAGGTGCCGGCCATCGTGGATG
GTAAATTTCAGTTGGGCGAGAGTGTCTCCATAGTGCGATATCTCGCGGAC
AAGGGAGTCTTCAGTGAACAGCTGTACCCCAAAACCTTGGAGGAACGCGC
GCGGGTGGACGAGTTCCTCGAGTGGCAGCATTTCAATGTCCGCTTGGTCT
GCTCCCTGTTCTTCCGTCAGGTGTGGCTTCTTCCGGCAAAGGGACTGGCG
CCGGCTCCCAAGCCAGAGTCTGTCAAGAAGCTAATCAAGGATGTGGAGAG
TAATTTGGGTCTACTGGAACGCCTCTGGCTGGAAAAGGACTTCTTAGTCG
GCGACAAACTTACCGTGGCAGACATCTTCGGGTCTTCAGAAATTAATCAG
ATGAAGCTCTGCCAGTACAACGTAAATGAGAAGCAATTCCCCAAGGTGGC
CAAGTGGATGGAACGCGTTCGTGATGCTACCAATCCCTACTACGATGAGG
CCCACAGCTTCGTCTACAAGACCTCTCAGCAGGCAGTCAAGGCCAAAAAC
GCAAGCTTTCTAGACCAT

BO12990.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 687 CG30000-PA 1..684 17..700 3420 100 Plus
GstT2-RA 687 CG30005-PA 97..602 113..618 295 70.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-RA 997 CG30000-RA 100..783 17..700 3420 100 Plus
GstT2-RA 887 CG30005-RA 172..677 113..618 295 70.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9606446..9606763 237..554 1590 100 Plus
2R 25286936 2R 9606825..9606970 555..700 730 100 Plus
2R 25286936 2R 9606087..9606204 17..134 590 100 Plus
2R 25286936 2R 9606280..9606382 135..237 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:21:25 has no hits.

BO12990.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:08 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 1..687 17..703 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:14 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 98..781 17..700 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:51 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:09 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
CG30000-RA 98..781 17..700 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:57 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
GstT1-RA 100..783 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:57 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9606087..9606204 17..134 100 -> Plus
2R 9606280..9606382 135..237 100 -> Plus
2R 9606447..9606763 238..554 100 -> Plus
2R 9606825..9606970 555..702 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:51 Download gff for BO12990.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5493592..5493709 17..134 100 -> Plus
arm_2R 5493785..5493887 135..237 100 -> Plus
arm_2R 5493952..5494268 238..554 100 -> Plus
arm_2R 5494330..5494475 555..702 98   Plus

BO12990.pep Sequence

Translation from 16 to 718

> BO12990.pep
MSKAIKYYYDFLSQPSRALWIAMKLGKTPFEDCPVALRKQEQLTDEYRSI
NRFQKVPAIVDGKFQLGESVSIVRYLADKGVFSEQLYPKTLEERARVDEF
LEWQHFNVRLVCSLFFRQVWLLPAKGLAPAPKPESVKKLIKDVESNLGLL
ERLWLEKDFLVGDKLTVADIFGSSEINQMKLCQYNVNEKQFPKVAKWMER
VRDATNPYYDEAHSFVYKTSQQAVKAKNASFLDH

BO12990.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
GstT1-PA 228 CG30000-PA 1..228 1..228 1190 100 Plus
GstT2-PA 228 CG30005-PA 1..227 1..227 828 65.6 Plus
GstT3-PC 228 CG1702-PC 1..227 1..227 593 51.1 Plus
GstT3-PA 228 CG1702-PA 1..227 1..227 593 51.1 Plus
GstT3-PB 268 CG1702-PB 41..267 1..227 593 51.1 Plus