Clone Sequence Records
BO12991.3prime Sequence
639 bp (488 high quality bases) assembled on 2006-05-08
> BO12991.3prime
ATGGTCTAGAAAGCTTGCGTAGTCCTGCACGCGACCAGTGCCCAGACGCT
CCTTCCGAATCTCAGTGCGCAGCCACGAGGGCACATCGCGTATGGGATGG
GCATTGGGGTAGCGCAGCGGCTTCTTTGGCCCCTCGAATGGATGCGTTTT
GGCCAGCTTGCGCTCCAGATACTCCTTGTTCACCTGCTTCTGATCGCGGT
GCTTGTCCATGTACAAATTGAAGGGCTGCTTCAGCGGGAAGAACTTCTGG
TCGGTCAGGTACGGCTTGGGGAAGTCGTACTCATAAACGGGCTCTTTGAT
CTTCAAGACATCGTGGTAGAACTGCGTCAATGACTCGTCCCAGTTGGTCT
GATAGAAGGCCAGGCCAGCCGGCGTCAGTTGCTCCTGGTGCTGACGATAG
AAGTCCAGGGTGCTGAAGGTGCGCTTCTCCAGATTACCGTAGTCGGCAGC
AGCCAACTGATAAGAGCCGAGATCAAGGCGCGCCTGCTGTTTGTAGAGCA
CAAAGACCATGCGTTGGTAACCAACGCCGCGCGGCGGGAACGGCGGTAGA
TACTCGGCGAGAACCTGACCCTCGCTCACCTTGCCGTTGGGTATGTTTGG
CAATGAACCAATGCAGACACTCGGCAGTTCCATTTGTGT
BO12991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15871-PA | 1251 | mRpL38-RA | 670..1248 | 597..19 | 2895 | 100 | Minus |
CG15871-PA | 1251 | mRpL38-RA | 629..671 | 639..597 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 680..1299 | 639..19 | 3080 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14227201..14227495 | 597..303 | 1475 | 100 | Minus |
X | 23542271 | X | 14227566..14227849 | 302..19 | 1420 | 100 | Minus |
X | 23542271 | X | 14227105..14227141 | 639..603 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:19:12 has no hits.
BO12991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:59 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 629..1251 | 18..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:30 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 629..1251 | 18..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:56 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 680..1299 | 19..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:59 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 680..1299 | 19..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:59 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14227105..14227141 | 603..639 | 100 | -> | Minus |
X | 14227197..14227495 | 303..602 | 99 | -> | Minus |
X | 14227566..14227849 | 19..302 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:56 Download gff for
BO12991.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14121138..14121174 | 603..639 | 100 | -> | Minus |
arm_X | 14121230..14121528 | 303..602 | 99 | -> | Minus |
arm_X | 14121599..14121882 | 19..302 | 100 | | Minus |
BO12991.5prime Sequence
729 bp (626 high quality bases) assembled on 2006-05-08
> BO12991.5prime
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
CAAGGTGAGCGAGGGTCAGGTTCTCGCCA
BO12991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15871-PA | 1251 | mRpL38-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG15871-PA | 1251 | mRpL38-RA | 684..711 | 701..728 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 51..762 | 16..728 | 3540 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14226784..14227141 | 324..681 | 1790 | 100 | Plus |
X | 23542271 | X | 14226561..14226717 | 167..323 | 785 | 100 | Plus |
X | 23542271 | X | 14226339..14226490 | 16..167 | 760 | 100 | Plus |
X | 23542271 | X | 14227197..14227242 | 682..728 | 185 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:41 has no hits.
BO12991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:00 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 1..711 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:31 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15871-PA | 1..711 | 17..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:40 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 48..762 | 9..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:11 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 48..762 | 9..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:11 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14226336..14226490 | 9..167 | 97 | -> | Plus |
X | 14226562..14226717 | 168..323 | 100 | -> | Plus |
X | 14226784..14227141 | 324..681 | 100 | -> | Plus |
X | 14227197..14227242 | 682..728 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:40 Download gff for
BO12991.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14120369..14120523 | 9..167 | 97 | -> | Plus |
arm_X | 14120595..14120750 | 168..323 | 100 | -> | Plus |
arm_X | 14120817..14121174 | 324..681 | 100 | -> | Plus |
arm_X | 14121230..14121275 | 682..728 | 97 | | Plus |
BO12991.complete Sequence
1282 bp assembled on 2008-01-17
GenBank Submission: FJ632643
> BO12991.complete
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
AAGGTGAGCGAGGGTCAGGTTCTCGCCGAGTATCTACCGCCGTTCCCGCC
GCGCGGCGTTGGTTACCAACGCATGGTCTTTGTGCTCTACAAACAGCAGG
CGCGCCTTGATCTCGGCTCTTATCAGTTGGCTGCTGCCGACTACGGTAAT
CTGGAGAAGCGCACCTTCAGCACCCTGGACTTCTATCGTCAGCACCAGGA
GCAACTGACGCCGGCTGGCCTGGCCTTCTATCAGACCAACTGGGACGAGT
CATTGACGCAGTTCTACCACGATGTCTTGAAGATCAAAGAGCCCGTTTAT
GAGTACGACTTCCCCAAGCCGTACCTGACCGACCAGAAGTTCTTCCCGCT
GAAGCAGCCCTTCAATTTGTACATGGACAAGCACCGCGATCAGAAGCAGG
TGAACAAGGAGTATCTGGAGCGCAAGCTGGCCAAAACGCATCCATTCGAG
GGGCCAAAGAAGCCGCTGCGCTACCCCAATGCCCATCCCATACGCGATGT
GCCCTCGTGGCTGCGCACTGAGATTCGGAAGGAGCGTCTGGGCACTGGTC
GCGTGCAGGACTACGCAAGCTTTCTAGACCAT
BO12991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1251 | CG15871-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-RA | 1399 | CG15871-RA | 51..1299 | 16..1264 | 6245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14226784..14227141 | 324..681 | 1790 | 100 | Plus |
X | 23542271 | X | 14227197..14227495 | 682..980 | 1495 | 100 | Plus |
X | 23542271 | X | 14227566..14227849 | 981..1264 | 1420 | 100 | Plus |
X | 23542271 | X | 14226561..14226717 | 167..323 | 785 | 100 | Plus |
X | 23542271 | X | 14226339..14226490 | 16..167 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:53:23 has no hits.
BO12991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:15 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:24 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 50..1297 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:30 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 52..1299 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:15 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 46..1297 | 9..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:57 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL38-RA | 52..1299 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:57 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14227197..14227495 | 682..980 | 100 | -> | Plus |
X | 14227566..14227849 | 981..1266 | 99 | | Plus |
X | 14226340..14226490 | 17..167 | 100 | -> | Plus |
X | 14226562..14226717 | 168..323 | 100 | -> | Plus |
X | 14226784..14227141 | 324..681 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:30 Download gff for
BO12991.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14120373..14120523 | 17..167 | 100 | -> | Plus |
arm_X | 14120595..14120750 | 168..323 | 100 | -> | Plus |
arm_X | 14120817..14121174 | 324..681 | 100 | -> | Plus |
arm_X | 14121230..14121528 | 682..980 | 100 | -> | Plus |
arm_X | 14121599..14121882 | 981..1266 | 99 | | Plus |
BO12991.pep Sequence
Translation from 16 to 1282
> BO12991.pep
MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR
EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS
NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI
SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT
LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY
QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA
GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN
LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR
TEIRKERLGTGRVQDYASFLDH
BO12991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL38-PA | 416 | CG15871-PA | 1..416 | 1..416 | 2195 | 100 | Plus |
CG17919-PA | 202 | CG17919-PA | 12..196 | 125..317 | 177 | 27.3 | Plus |
a5-PA | 210 | CG5430-PA | 44..210 | 144..325 | 176 | 25 | Plus |
CG10298-PA | 187 | CG10298-PA | 39..180 | 165..317 | 172 | 29 | Plus |
Pebp1-PA | 176 | CG18594-PA | 32..166 | 165..311 | 159 | 28.2 | Plus |