Clone BO12991 Report

Search the DGRC for BO12991

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL38-RA
Protein status:BO12991.pep:
Sequenced Size:1282

Clone Sequence Records

BO12991.3prime Sequence

639 bp (488 high quality bases) assembled on 2006-05-08

> BO12991.3prime
ATGGTCTAGAAAGCTTGCGTAGTCCTGCACGCGACCAGTGCCCAGACGCT
CCTTCCGAATCTCAGTGCGCAGCCACGAGGGCACATCGCGTATGGGATGG
GCATTGGGGTAGCGCAGCGGCTTCTTTGGCCCCTCGAATGGATGCGTTTT
GGCCAGCTTGCGCTCCAGATACTCCTTGTTCACCTGCTTCTGATCGCGGT
GCTTGTCCATGTACAAATTGAAGGGCTGCTTCAGCGGGAAGAACTTCTGG
TCGGTCAGGTACGGCTTGGGGAAGTCGTACTCATAAACGGGCTCTTTGAT
CTTCAAGACATCGTGGTAGAACTGCGTCAATGACTCGTCCCAGTTGGTCT
GATAGAAGGCCAGGCCAGCCGGCGTCAGTTGCTCCTGGTGCTGACGATAG
AAGTCCAGGGTGCTGAAGGTGCGCTTCTCCAGATTACCGTAGTCGGCAGC
AGCCAACTGATAAGAGCCGAGATCAAGGCGCGCCTGCTGTTTGTAGAGCA
CAAAGACCATGCGTTGGTAACCAACGCCGCGCGGCGGGAACGGCGGTAGA
TACTCGGCGAGAACCTGACCCTCGCTCACCTTGCCGTTGGGTATGTTTGG
CAATGAACCAATGCAGACACTCGGCAGTTCCATTTGTGT

BO12991.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15871-PA 1251 mRpL38-RA 670..1248 597..19 2895 100 Minus
CG15871-PA 1251 mRpL38-RA 629..671 639..597 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 680..1299 639..19 3080 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14227201..14227495 597..303 1475 100 Minus
X 23542271 X 14227566..14227849 302..19 1420 100 Minus
X 23542271 X 14227105..14227141 639..603 185 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:19:12 has no hits.

BO12991.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:51:59 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 629..1251 18..639 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:30 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 629..1251 18..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:56 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 680..1299 19..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:59 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 680..1299 19..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:59 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14227105..14227141 603..639 100 -> Minus
X 14227197..14227495 303..602 99 -> Minus
X 14227566..14227849 19..302 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:56 Download gff for BO12991.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14121138..14121174 603..639 100 -> Minus
arm_X 14121230..14121528 303..602 99 -> Minus
arm_X 14121599..14121882 19..302 100   Minus

BO12991.5prime Sequence

729 bp (626 high quality bases) assembled on 2006-05-08

> BO12991.5prime
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
CAAGGTGAGCGAGGGTCAGGTTCTCGCCA

BO12991.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15871-PA 1251 mRpL38-RA 1..684 17..700 3420 100 Plus
CG15871-PA 1251 mRpL38-RA 684..711 701..728 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 51..762 16..728 3540 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14226784..14227141 324..681 1790 100 Plus
X 23542271 X 14226561..14226717 167..323 785 100 Plus
X 23542271 X 14226339..14226490 16..167 760 100 Plus
X 23542271 X 14227197..14227242 682..728 185 97.9 Plus
Blast to na_te.dros performed on 2015-02-12 11:10:41 has no hits.

BO12991.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:00 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 1..711 17..728 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:31 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15871-PA 1..711 17..728 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:40 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 48..762 9..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:26:11 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 48..762 9..728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:26:11 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14226336..14226490 9..167 97 -> Plus
X 14226562..14226717 168..323 100 -> Plus
X 14226784..14227141 324..681 100 -> Plus
X 14227197..14227242 682..728 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:40 Download gff for BO12991.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14120369..14120523 9..167 97 -> Plus
arm_X 14120595..14120750 168..323 100 -> Plus
arm_X 14120817..14121174 324..681 100 -> Plus
arm_X 14121230..14121275 682..728 97   Plus

BO12991.complete Sequence

1282 bp assembled on 2008-01-17

GenBank Submission: FJ632643

> BO12991.complete
GAAGTTATCAGTCGACATGTCTTTCAGTAATTTGTTAATGAAAAGTGGCC
TAACTGTGGCCGTGCGTGATGCGCAGGCCGCCGTCCTGATGACTGCCACA
CGGCAAGGACACACCATACGCGGCAAGCCGCCCGGCGTGGCCCGTTCTCT
GGAGCAGCGGATTCGTGAGGAGAACGTTGAGGATCCGGAGGTGGTGGCCC
GCATCAACATTGGCTTCCCGCAGCTGAAGGAGTCGCGCTCGGCGCAGCTA
AAGAAGCGACTGGAGCACCTGAAGTCCCAGCGCAGTGACAAGCAGCTGGA
GCAGCTGGCGCGGAGCAACAAGCTGATCATCGATTTGGACAAGGTGCAGC
GCACCTATGTGAAGACCACGGGCCAGCATGATCTTCGCCTGGTGGCGGAC
CACTACGGCATCTTCGAGCACCTCTTTGGCAGCGCCTACTTTGTGCCCCG
CGTGCCGCTCAACATAAGCTACCAACTGGACGGCGATAGCCTGGCACCCG
TCTACAATGGCAACGTTATCAAGCCGACGGAGGCAGCCAAGGCGCCTCAG
ATCGATTTCGATGGCCTAGTGGATCCCATTACGGGACAAGCCGCCGGCCA
GGACACTTACTGGACCCTGGTGGCCAGCAATCCCGATGCGCACTACACAA
ATGGAACTGCCGAGTGTCTGCATTGGTTCATTGCCAACATACCCAACGGC
AAGGTGAGCGAGGGTCAGGTTCTCGCCGAGTATCTACCGCCGTTCCCGCC
GCGCGGCGTTGGTTACCAACGCATGGTCTTTGTGCTCTACAAACAGCAGG
CGCGCCTTGATCTCGGCTCTTATCAGTTGGCTGCTGCCGACTACGGTAAT
CTGGAGAAGCGCACCTTCAGCACCCTGGACTTCTATCGTCAGCACCAGGA
GCAACTGACGCCGGCTGGCCTGGCCTTCTATCAGACCAACTGGGACGAGT
CATTGACGCAGTTCTACCACGATGTCTTGAAGATCAAAGAGCCCGTTTAT
GAGTACGACTTCCCCAAGCCGTACCTGACCGACCAGAAGTTCTTCCCGCT
GAAGCAGCCCTTCAATTTGTACATGGACAAGCACCGCGATCAGAAGCAGG
TGAACAAGGAGTATCTGGAGCGCAAGCTGGCCAAAACGCATCCATTCGAG
GGGCCAAAGAAGCCGCTGCGCTACCCCAATGCCCATCCCATACGCGATGT
GCCCTCGTGGCTGCGCACTGAGATTCGGAAGGAGCGTCTGGGCACTGGTC
GCGTGCAGGACTACGCAAGCTTTCTAGACCAT

BO12991.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1251 CG15871-PA 1..1248 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-RA 1399 CG15871-RA 51..1299 16..1264 6245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14226784..14227141 324..681 1790 100 Plus
X 23542271 X 14227197..14227495 682..980 1495 100 Plus
X 23542271 X 14227566..14227849 981..1264 1420 100 Plus
X 23542271 X 14226561..14226717 167..323 785 100 Plus
X 23542271 X 14226339..14226490 16..167 760 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:53:23 has no hits.

BO12991.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:15 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:24 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 50..1297 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:30 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 52..1299 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:15 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 46..1297 9..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:57 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL38-RA 52..1299 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:57 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
X 14227197..14227495 682..980 100 -> Plus
X 14227566..14227849 981..1266 99   Plus
X 14226340..14226490 17..167 100 -> Plus
X 14226562..14226717 168..323 100 -> Plus
X 14226784..14227141 324..681 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:30 Download gff for BO12991.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14120373..14120523 17..167 100 -> Plus
arm_X 14120595..14120750 168..323 100 -> Plus
arm_X 14120817..14121174 324..681 100 -> Plus
arm_X 14121230..14121528 682..980 100 -> Plus
arm_X 14121599..14121882 981..1266 99   Plus

BO12991.pep Sequence

Translation from 16 to 1282

> BO12991.pep
MSFSNLLMKSGLTVAVRDAQAAVLMTATRQGHTIRGKPPGVARSLEQRIR
EENVEDPEVVARINIGFPQLKESRSAQLKKRLEHLKSQRSDKQLEQLARS
NKLIIDLDKVQRTYVKTTGQHDLRLVADHYGIFEHLFGSAYFVPRVPLNI
SYQLDGDSLAPVYNGNVIKPTEAAKAPQIDFDGLVDPITGQAAGQDTYWT
LVASNPDAHYTNGTAECLHWFIANIPNGKVSEGQVLAEYLPPFPPRGVGY
QRMVFVLYKQQARLDLGSYQLAAADYGNLEKRTFSTLDFYRQHQEQLTPA
GLAFYQTNWDESLTQFYHDVLKIKEPVYEYDFPKPYLTDQKFFPLKQPFN
LYMDKHRDQKQVNKEYLERKLAKTHPFEGPKKPLRYPNAHPIRDVPSWLR
TEIRKERLGTGRVQDYASFLDH

BO12991.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL38-PA 416 CG15871-PA 1..416 1..416 2195 100 Plus
CG17919-PA 202 CG17919-PA 12..196 125..317 177 27.3 Plus
a5-PA 210 CG5430-PA 44..210 144..325 176 25 Plus
CG10298-PA 187 CG10298-PA 39..180 165..317 172 29 Plus
Pebp1-PA 176 CG18594-PA 32..166 165..311 159 28.2 Plus