Clone BO12994 Report

Search the DGRC for BO12994

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:129
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptMED20-RA
Protein status:BO12994.pep: validated full length
Sequenced Size:790

Clone Sequence Records

BO12994.3prime Sequence

680 bp (678 high quality bases) assembled on 2006-05-08

> BO12994.3prime
ATGGTCTAGAAAGCTTGCGGATCGATGTAGTCCCGCCACCGCCGGCGACA
TATGCACGTTCGGACCAACCTGTTGGCTACCCGGTCCACTGCCCATACCG
CCCATAAGAGTCACATGCTTCCTATAGTTGGTGAACTGCTCCAGGTATTG
TTTCACGGTGTCCATTGGCTCAAAGATGTCGTTGTGCTTGGCATGCAGCT
GCTGTTGCCCCATTGCCGTCATTATTGTCTGTGGAGCGAAATAGGAGGGA
AAGTCCTTATTCACAGCAATGCCGAGGAATCCCTGCAGCATTTCGCGTAT
CATTTCCCAGCAGTAGGCCAGAATCACGCATGACTTGTACTCGATTTCGA
TGAGGATGCCCTTGAAGTGCTCCATCATGGTGACGGAACCGAGTTTGATA
ACAAAGTCACCATACTCGAAACGAGCGCCACGGGACTCGATTTTGGTCTG
CTTTTTGGAGGTGAAGGTGTTGGTCATCTTGAGCATGAGCAGATCGAAGA
TATTGTCGGCGACAATGGCCACTTGTTTGCCGGTGCCATTGTCGATGATC
GAGAACGTGGAGGCGGGATACTCGGAGTTGTGCAGGACGTGGACTGCGCG
TCCAGGTGCTCCATTGTGCGGCTGTGGCGTCGAGATGAACGTTTCGCAGT
CCACCAGAAATTGACCGGCATGTGTGGCGC

BO12994.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18780-PA 759 MED20-RA 95..756 680..19 3310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
MED20-RB 1037 CG18780-RB 182..843 680..19 3310 100 Minus
MED20-RA 1037 CG18780-RA 182..843 680..19 3310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8072006..8072667 19..680 3310 100 Plus
Blast to na_te.dros performed 2015-02-01 04:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1623..1656 658..625 107 79.4 Minus

BO12994.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:05 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
MED20-PA 95..759 16..680 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:39 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18780-PA 95..759 16..680 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:41 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 182..843 19..680 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:04 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 182..843 19..680 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:04 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8072006..8072667 19..680 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:41 Download gff for BO12994.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8072006..8072667 19..680 100   Plus

BO12994.5prime Sequence

788 bp (702 high quality bases) assembled on 2006-05-08

> BO12994.5prime
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCGCAAGCTTTCTAGACC

BO12994.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG18780-PA 759 MED20-RA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
MED20-RB 1037 CG18780-RB 88..843 17..772 3780 100 Plus
MED20-RA 1037 CG18780-RA 88..843 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8072006..8072761 772..17 3780 100 Minus
Blast to na_te.dros performed 2015-02-11 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1623..1656 133..166 107 79.4 Plus

BO12994.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:06 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
MED20-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:40 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18780-PA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:30 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 80..843 9..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:56 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 80..843 9..772 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:56 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8072006..8072769 9..772 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:30 Download gff for BO12994.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8072006..8072769 9..772 99   Minus

BO12994.complete Sequence

790 bp assembled on 2006-10-11

GenBank Submission: FJ632644

> BO12994.complete
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCGCAAGCTTTCTAGACCAT

BO12994.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
MED20-RB 807 CG18780-PB 1..756 17..772 3780 100 Plus
MED20-RA 759 CG18780-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
MED20-RB 1037 CG18780-RB 88..843 17..772 3780 100 Plus
MED20-RA 1037 CG18780-RA 88..843 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8072006..8072761 772..17 3780 100 Minus
Blast to na_te.dros performed 2014-11-28 01:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1623..1656 133..166 107 79.4 Plus

BO12994.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:09 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 1..759 17..775 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:16 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 76..839 9..772 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:20 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 88..843 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:10 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 76..839 9..772 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:58 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
MED20-RA 88..843 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:58 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8072003..8072761 17..774 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:20 Download gff for BO12994.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8072003..8072761 17..774 99   Minus

BO12994.pep Sequence

Translation from 16 to 790

> BO12994.pep
MGVTILQPYPLPEGKSGAHIIDQLSKRLLALGATHAGQFLVDCETFISTP
QPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKM
TNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCV
ILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDI
FEPMDTVKQYLEQFTNYRKHVTLMGGMGSGPGSQQVGPNVHMSPAVAGLH
RSASFLDH

BO12994.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:41
Subject Length Description Subject Range Query Range Score Percent Strand
MED20-PB 268 CG18780-PB 1..254 1..254 1325 99.6 Plus
MED20-PA 252 CG18780-PA 1..252 1..252 1322 100 Plus