Clone Sequence Records
BO12994.3prime Sequence
680 bp (678 high quality bases) assembled on 2006-05-08
> BO12994.3prime
ATGGTCTAGAAAGCTTGCGGATCGATGTAGTCCCGCCACCGCCGGCGACA
TATGCACGTTCGGACCAACCTGTTGGCTACCCGGTCCACTGCCCATACCG
CCCATAAGAGTCACATGCTTCCTATAGTTGGTGAACTGCTCCAGGTATTG
TTTCACGGTGTCCATTGGCTCAAAGATGTCGTTGTGCTTGGCATGCAGCT
GCTGTTGCCCCATTGCCGTCATTATTGTCTGTGGAGCGAAATAGGAGGGA
AAGTCCTTATTCACAGCAATGCCGAGGAATCCCTGCAGCATTTCGCGTAT
CATTTCCCAGCAGTAGGCCAGAATCACGCATGACTTGTACTCGATTTCGA
TGAGGATGCCCTTGAAGTGCTCCATCATGGTGACGGAACCGAGTTTGATA
ACAAAGTCACCATACTCGAAACGAGCGCCACGGGACTCGATTTTGGTCTG
CTTTTTGGAGGTGAAGGTGTTGGTCATCTTGAGCATGAGCAGATCGAAGA
TATTGTCGGCGACAATGGCCACTTGTTTGCCGGTGCCATTGTCGATGATC
GAGAACGTGGAGGCGGGATACTCGGAGTTGTGCAGGACGTGGACTGCGCG
TCCAGGTGCTCCATTGTGCGGCTGTGGCGTCGAGATGAACGTTTCGCAGT
CCACCAGAAATTGACCGGCATGTGTGGCGC
BO12994.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18780-PA | 759 | MED20-RA | 95..756 | 680..19 | 3310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED20-RB | 1037 | CG18780-RB | 182..843 | 680..19 | 3310 | 100 | Minus |
MED20-RA | 1037 | CG18780-RA | 182..843 | 680..19 | 3310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8072006..8072667 | 19..680 | 3310 | 100 | Plus |
Blast to na_te.dros performed 2015-02-01 04:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 658..625 | 107 | 79.4 | Minus |
BO12994.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:05 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-PA | 95..759 | 16..680 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:39 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18780-PA | 95..759 | 16..680 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:41 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 182..843 | 19..680 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:48:04 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 182..843 | 19..680 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:48:04 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072006..8072667 | 19..680 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:41 Download gff for
BO12994.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072006..8072667 | 19..680 | 100 | | Plus |
BO12994.5prime Sequence
788 bp (702 high quality bases) assembled on 2006-05-08
> BO12994.5prime
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCGCAAGCTTTCTAGACC
BO12994.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18780-PA | 759 | MED20-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED20-RB | 1037 | CG18780-RB | 88..843 | 17..772 | 3780 | 100 | Plus |
MED20-RA | 1037 | CG18780-RA | 88..843 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8072006..8072761 | 772..17 | 3780 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 11:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 133..166 | 107 | 79.4 | Plus |
BO12994.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:06 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:40 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18780-PA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:30 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 80..843 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:56 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 80..843 | 9..772 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:56 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072006..8072769 | 9..772 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:30 Download gff for
BO12994.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072006..8072769 | 9..772 | 99 | | Minus |
BO12994.complete Sequence
790 bp assembled on 2006-10-11
GenBank Submission: FJ632644
> BO12994.complete
GAAGTTATCAGTCGACATGGGAGTAACTATCCTTCAACCGTATCCCTTAC
CCGAAGGCAAATCGGGTGCCCACATAATCGATCAGCTGAGCAAGCGTCTG
CTCGCCCTGGGCGCCACACATGCCGGTCAATTTCTGGTGGACTGCGAAAC
GTTCATCTCGACGCCACAGCCGCACAATGGAGCACCTGGACGCGCAGTCC
ACGTCCTGCACAACTCCGAGTATCCCGCCTCCACGTTCTCGATCATCGAC
AATGGCACCGGCAAACAAGTGGCCATTGTCGCCGACAATATCTTCGATCT
GCTCATGCTCAAGATGACCAACACCTTCACCTCCAAAAAGCAGACCAAAA
TCGAGTCCCGTGGCGCTCGTTTCGAGTATGGTGACTTTGTTATCAAACTC
GGTTCCGTCACCATGATGGAGCACTTCAAGGGCATCCTCATCGAAATCGA
GTACAAGTCATGCGTGATTCTGGCCTACTGCTGGGAAATGATACGCGAAA
TGCTGCAGGGATTCCTCGGCATTGCTGTGAATAAGGACTTTCCCTCCTAT
TTCGCTCCACAGACAATAATGACGGCAATGGGGCAACAGCAGCTGCATGC
CAAGCACAACGACATCTTTGAGCCAATGGACACCGTGAAACAATACCTGG
AGCAGTTCACCAACTATAGGAAGCATGTGACTCTTATGGGCGGTATGGGC
AGTGGACCGGGTAGCCAACAGGTTGGTCCGAACGTGCATATGTCGCCGGC
GGTGGCGGGACTACATCGATCCGCAAGCTTTCTAGACCAT
BO12994.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED20-RB | 807 | CG18780-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
MED20-RA | 759 | CG18780-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED20-RB | 1037 | CG18780-RB | 88..843 | 17..772 | 3780 | 100 | Plus |
MED20-RA | 1037 | CG18780-RA | 88..843 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8072006..8072761 | 772..17 | 3780 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1623..1656 | 133..166 | 107 | 79.4 | Plus |
BO12994.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:09 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 1..759 | 17..775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:16 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 76..839 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:20 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 88..843 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:10 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 76..839 | 9..772 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:58 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED20-RA | 88..843 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:58 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8072003..8072761 | 17..774 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:20 Download gff for
BO12994.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8072003..8072761 | 17..774 | 99 | | Minus |
BO12994.pep Sequence
Translation from 16 to 790
> BO12994.pep
MGVTILQPYPLPEGKSGAHIIDQLSKRLLALGATHAGQFLVDCETFISTP
QPHNGAPGRAVHVLHNSEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKM
TNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMMEHFKGILIEIEYKSCV
ILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLHAKHNDI
FEPMDTVKQYLEQFTNYRKHVTLMGGMGSGPGSQQVGPNVHMSPAVAGLH
RSASFLDH
BO12994.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED20-PB | 268 | CG18780-PB | 1..254 | 1..254 | 1325 | 99.6 | Plus |
MED20-PA | 252 | CG18780-PA | 1..252 | 1..252 | 1322 | 100 | Plus |