Clone BO13001 Report

Search the DGRC for BO13001

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG32373-RA
Protein status:BO13001.pep:
Sequenced Size:1492

Clone Sequence Records

BO13001.5prime Sequence

753 bp (682 high quality bases) assembled on 2006-05-08

> BO13001.5prime
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCC

BO13001.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-PA 1461 CG32373-RA 1..737 17..753 3685 100 Plus
CG32373-PB 1461 CG32373-RB 1..737 17..753 3685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1812 CG32373-RC 279..1015 17..753 3685 100 Plus
CG32373-RB 2066 CG32373-RB 533..1269 17..753 3685 100 Plus
CG32373-RA 1979 CG32373-RA 446..1182 17..753 3685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7757288..7757587 83..382 1500 100 Plus
3L 28110227 3L 7758030..7758163 620..753 670 100 Plus
3L 28110227 3L 7757827..7757953 494..620 635 100 Plus
3L 28110227 3L 7757652..7757764 382..494 565 100 Plus
3L 28110227 3L 7757110..7757179 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:00:27 has no hits.

BO13001.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:11 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-PA 1..737 17..753 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:48 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-PB 1..737 17..753 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:11 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 437..1182 7..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:36 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 437..1182 7..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:36 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7758031..7758163 621..753 100   Plus
3L 7757101..7757179 7..86 95 -> Plus
3L 7757292..7757587 87..382 100 -> Plus
3L 7757653..7757764 383..494 100 -> Plus
3L 7757828..7757953 495..620 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:11 Download gff for BO13001.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7750201..7750279 7..86 95 -> Plus
arm_3L 7750392..7750687 87..382 100 -> Plus
arm_3L 7750753..7750864 383..494 100 -> Plus
arm_3L 7750928..7751053 495..620 100 -> Plus
arm_3L 7751131..7751263 621..753 100   Plus

BO13001.complete Sequence

1492 bp assembled on 2008-01-17

GenBank Submission: FJ632645

> BO13001.complete
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCCGGGTGAAATAGTGTGCAAGTCCGGATTCAAGCTGTCCGACGATGGCA
GTGAGTGTCAGGACATTAACGAATGCGATTTGGCGGATATTGATTCAGAT
TCTTGGCGAATGACTTACCGTTACTGTGAGCACAAATGCGAGAATACGGT
AGGTTCCTATATCTGCCATTGCCCCCAAGGATATCATCTACTCGATGATC
AAAATAGTTGTATTTTGGATGGCTCCAAATTACCGCCATCGAAAGACGCG
CCTGTCAGTCAGGAAGCACCAAGAAAGGATATATGCCCTTTGTTTAAGGG
ACCAGCCAACGGAAAGGCTTCTTGCGATAAGTATCTCCAAAATGGCTTCA
ACTACACTCGTTGCAATATTACCTGCAACGCGGGTTATATCATGCAGGGC
TCACAATTTGCGGTTTGTGGACACACCGGACTTTGGTCTAGTCCAGAAGC
CAAGTGCGTGGAATCCCTCGCATTGAGTTGTCCAGTTTTGACACCCCCTC
GCAATGGACGTTTCTATCCTGCAAGCTGCAATAATGAACCATCCAAATCA
CTCGCGATTTGTGAACTGTTATGTGATCGAGGCTATTTGCCCAGAATGGA
CACACAGCTCATTTGTGCGGCACCATGGGGCTGGATCCAAAGAAGATGGC
AGGACAATGTGCCACAATATGTGTTTCAGCAATCAGTGAAACAGGACGAG
GGCTGCGTGAAGATCGCTCCGCCTGCAAGCTTTCTAGACCAT

BO13001.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1461 CG32373-PC 1..1458 17..1474 7290 100 Plus
CG32373-RB 1461 CG32373-PB 1..1458 17..1474 7290 100 Plus
CG32373-RA 1461 CG32373-PA 1..1458 17..1474 7290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-RC 1812 CG32373-RC 279..1736 17..1474 7290 100 Plus
CG32373-RB 2066 CG32373-RB 533..1990 17..1474 7290 100 Plus
CG32373-RA 1979 CG32373-RA 446..1903 17..1474 7290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7758030..7758621 620..1211 2960 100 Plus
3L 28110227 3L 7757288..7757587 83..382 1500 100 Plus
3L 28110227 3L 7758719..7758945 1211..1437 1135 100 Plus
3L 28110227 3L 7757827..7757953 494..620 635 100 Plus
3L 28110227 3L 7757652..7757764 382..494 565 100 Plus
3L 28110227 3L 7757110..7757179 17..86 350 100 Plus
3L 28110227 3L 7759009..7759047 1436..1474 195 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:08:32 has no hits.

BO13001.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:16 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RB 1..1461 17..1478 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:34 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RB 498..1955 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:09 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 446..1903 17..1476 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:16 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RB 489..1958 7..1478 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:23 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
CG32373-RA 446..1903 17..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:23 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7757110..7757179 17..86 100 -> Plus
3L 7757292..7757587 87..382 100 -> Plus
3L 7757653..7757764 383..494 100 -> Plus
3L 7757828..7757953 495..620 100 -> Plus
3L 7758031..7758621 621..1211 100 -> Plus
3L 7758720..7758943 1212..1435 100 -> Plus
3L 7759009..7759047 1436..1476 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:09 Download gff for BO13001.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7751820..7752043 1212..1435 100 -> Plus
arm_3L 7752109..7752147 1436..1476 95   Plus
arm_3L 7750210..7750279 17..86 100 -> Plus
arm_3L 7750392..7750687 87..382 100 -> Plus
arm_3L 7750753..7750864 383..494 100 -> Plus
arm_3L 7750928..7751053 495..620 100 -> Plus
arm_3L 7751131..7751721 621..1211 100 -> Plus

BO13001.pep Sequence

Translation from 16 to 1492

> BO13001.pep
MVQNRMSTSVIVLYALMCIAFSTASLNDIPEITPAIDNNLSFQYDDTCWT
PPRIKNAKASVKLRRNGEHVFLVTYYSCRVNYKLKRAKDNALYCSNGIWL
GLKPNCIKIGKGNTHSMKQKKMRCRIDNGGCAHICNRSTHKCECYEGYTL
NSTDLRSCNDIDECKESNGGCSQVCNNLPGEFICTCNSGFEIDESDEKTC
LDIDECADPELSWDCTAGCKNLNGTYKCLPSLVGRVEPTDGDGFSPGEIV
CKSGFKLSDDGSECQDINECDLADIDSDSWRMTYRYCEHKCENTVGSYIC
HCPQGYHLLDDQNSCILDGSKLPPSKDAPVSQEAPRKDICPLFKGPANGK
ASCDKYLQNGFNYTRCNITCNAGYIMQGSQFAVCGHTGLWSSPEAKCVES
LALSCPVLTPPRNGRFYPASCNNEPSKSLAICELLCDRGYLPRMDTQLIC
AAPWGWIQRRWQDNVPQYVFQQSVKQDEGCVKIAPPASFLDH

BO13001.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32373-PC 486 CG32373-PC 1..486 1..486 2727 100 Plus
CG32373-PB 486 CG32373-PB 1..486 1..486 2727 100 Plus
CG32373-PA 486 CG32373-PA 1..486 1..486 2727 100 Plus
frac-PG 1427 CG7526-PG 248..461 124..318 560 48.4 Plus
frac-PF 1427 CG7526-PF 248..461 124..318 560 48.4 Plus
frac-PG 1427 CG7526-PG 636..1043 124..456 391 29.4 Plus
frac-PG 1427 CG7526-PG 596..789 124..315 368 40.9 Plus
frac-PG 1427 CG7526-PG 524..786 129..380 234 26.2 Plus
frac-PG 1427 CG7526-PG 426..672 127..316 213 25.9 Plus