Clone Sequence Records
BO13001.5prime Sequence
753 bp (682 high quality bases) assembled on 2006-05-08
> BO13001.5prime
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCC
BO13001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-PA | 1461 | CG32373-RA | 1..737 | 17..753 | 3685 | 100 | Plus |
CG32373-PB | 1461 | CG32373-RB | 1..737 | 17..753 | 3685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1812 | CG32373-RC | 279..1015 | 17..753 | 3685 | 100 | Plus |
CG32373-RB | 2066 | CG32373-RB | 533..1269 | 17..753 | 3685 | 100 | Plus |
CG32373-RA | 1979 | CG32373-RA | 446..1182 | 17..753 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7757288..7757587 | 83..382 | 1500 | 100 | Plus |
3L | 28110227 | 3L | 7758030..7758163 | 620..753 | 670 | 100 | Plus |
3L | 28110227 | 3L | 7757827..7757953 | 494..620 | 635 | 100 | Plus |
3L | 28110227 | 3L | 7757652..7757764 | 382..494 | 565 | 100 | Plus |
3L | 28110227 | 3L | 7757110..7757179 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:00:27 has no hits.
BO13001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:11 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-PA | 1..737 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:48 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-PB | 1..737 | 17..753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:11 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 437..1182 | 7..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:36 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 437..1182 | 7..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:36 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7758031..7758163 | 621..753 | 100 | | Plus |
3L | 7757101..7757179 | 7..86 | 95 | -> | Plus |
3L | 7757292..7757587 | 87..382 | 100 | -> | Plus |
3L | 7757653..7757764 | 383..494 | 100 | -> | Plus |
3L | 7757828..7757953 | 495..620 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:11 Download gff for
BO13001.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7750201..7750279 | 7..86 | 95 | -> | Plus |
arm_3L | 7750392..7750687 | 87..382 | 100 | -> | Plus |
arm_3L | 7750753..7750864 | 383..494 | 100 | -> | Plus |
arm_3L | 7750928..7751053 | 495..620 | 100 | -> | Plus |
arm_3L | 7751131..7751263 | 621..753 | 100 | | Plus |
BO13001.complete Sequence
1492 bp assembled on 2008-01-17
GenBank Submission: FJ632645
> BO13001.complete
GAAGTTATCAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTG
TTTTGTACGCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGAT
ATTCCCGAAATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGA
CGATACCTGCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCA
AACTTCGCCGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGC
CGCGTCAACTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTC
AAATGGTATATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAG
GAAACACGCATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAAT
GGTGGTTGCGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTA
TGAGGGTTATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCG
ACGAGTGCAAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTT
CCTGGTGAATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAG
TGATGAAAAAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTAT
CGTGGGACTGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGC
CTTCCGTCACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTC
CCCGGGTGAAATAGTGTGCAAGTCCGGATTCAAGCTGTCCGACGATGGCA
GTGAGTGTCAGGACATTAACGAATGCGATTTGGCGGATATTGATTCAGAT
TCTTGGCGAATGACTTACCGTTACTGTGAGCACAAATGCGAGAATACGGT
AGGTTCCTATATCTGCCATTGCCCCCAAGGATATCATCTACTCGATGATC
AAAATAGTTGTATTTTGGATGGCTCCAAATTACCGCCATCGAAAGACGCG
CCTGTCAGTCAGGAAGCACCAAGAAAGGATATATGCCCTTTGTTTAAGGG
ACCAGCCAACGGAAAGGCTTCTTGCGATAAGTATCTCCAAAATGGCTTCA
ACTACACTCGTTGCAATATTACCTGCAACGCGGGTTATATCATGCAGGGC
TCACAATTTGCGGTTTGTGGACACACCGGACTTTGGTCTAGTCCAGAAGC
CAAGTGCGTGGAATCCCTCGCATTGAGTTGTCCAGTTTTGACACCCCCTC
GCAATGGACGTTTCTATCCTGCAAGCTGCAATAATGAACCATCCAAATCA
CTCGCGATTTGTGAACTGTTATGTGATCGAGGCTATTTGCCCAGAATGGA
CACACAGCTCATTTGTGCGGCACCATGGGGCTGGATCCAAAGAAGATGGC
AGGACAATGTGCCACAATATGTGTTTCAGCAATCAGTGAAACAGGACGAG
GGCTGCGTGAAGATCGCTCCGCCTGCAAGCTTTCTAGACCAT
BO13001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1461 | CG32373-PC | 1..1458 | 17..1474 | 7290 | 100 | Plus |
CG32373-RB | 1461 | CG32373-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
CG32373-RA | 1461 | CG32373-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-RC | 1812 | CG32373-RC | 279..1736 | 17..1474 | 7290 | 100 | Plus |
CG32373-RB | 2066 | CG32373-RB | 533..1990 | 17..1474 | 7290 | 100 | Plus |
CG32373-RA | 1979 | CG32373-RA | 446..1903 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7758030..7758621 | 620..1211 | 2960 | 100 | Plus |
3L | 28110227 | 3L | 7757288..7757587 | 83..382 | 1500 | 100 | Plus |
3L | 28110227 | 3L | 7758719..7758945 | 1211..1437 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 7757827..7757953 | 494..620 | 635 | 100 | Plus |
3L | 28110227 | 3L | 7757652..7757764 | 382..494 | 565 | 100 | Plus |
3L | 28110227 | 3L | 7757110..7757179 | 17..86 | 350 | 100 | Plus |
3L | 28110227 | 3L | 7759009..7759047 | 1436..1474 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:08:32 has no hits.
BO13001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:16 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RB | 1..1461 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:34 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RB | 498..1955 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:46:09 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 446..1903 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:16 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RB | 489..1958 | 7..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:19:23 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32373-RA | 446..1903 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:19:23 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7757110..7757179 | 17..86 | 100 | -> | Plus |
3L | 7757292..7757587 | 87..382 | 100 | -> | Plus |
3L | 7757653..7757764 | 383..494 | 100 | -> | Plus |
3L | 7757828..7757953 | 495..620 | 100 | -> | Plus |
3L | 7758031..7758621 | 621..1211 | 100 | -> | Plus |
3L | 7758720..7758943 | 1212..1435 | 100 | -> | Plus |
3L | 7759009..7759047 | 1436..1476 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:46:09 Download gff for
BO13001.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7751820..7752043 | 1212..1435 | 100 | -> | Plus |
arm_3L | 7752109..7752147 | 1436..1476 | 95 | | Plus |
arm_3L | 7750210..7750279 | 17..86 | 100 | -> | Plus |
arm_3L | 7750392..7750687 | 87..382 | 100 | -> | Plus |
arm_3L | 7750753..7750864 | 383..494 | 100 | -> | Plus |
arm_3L | 7750928..7751053 | 495..620 | 100 | -> | Plus |
arm_3L | 7751131..7751721 | 621..1211 | 100 | -> | Plus |
BO13001.pep Sequence
Translation from 16 to 1492
> BO13001.pep
MVQNRMSTSVIVLYALMCIAFSTASLNDIPEITPAIDNNLSFQYDDTCWT
PPRIKNAKASVKLRRNGEHVFLVTYYSCRVNYKLKRAKDNALYCSNGIWL
GLKPNCIKIGKGNTHSMKQKKMRCRIDNGGCAHICNRSTHKCECYEGYTL
NSTDLRSCNDIDECKESNGGCSQVCNNLPGEFICTCNSGFEIDESDEKTC
LDIDECADPELSWDCTAGCKNLNGTYKCLPSLVGRVEPTDGDGFSPGEIV
CKSGFKLSDDGSECQDINECDLADIDSDSWRMTYRYCEHKCENTVGSYIC
HCPQGYHLLDDQNSCILDGSKLPPSKDAPVSQEAPRKDICPLFKGPANGK
ASCDKYLQNGFNYTRCNITCNAGYIMQGSQFAVCGHTGLWSSPEAKCVES
LALSCPVLTPPRNGRFYPASCNNEPSKSLAICELLCDRGYLPRMDTQLIC
AAPWGWIQRRWQDNVPQYVFQQSVKQDEGCVKIAPPASFLDH
BO13001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32373-PC | 486 | CG32373-PC | 1..486 | 1..486 | 2727 | 100 | Plus |
CG32373-PB | 486 | CG32373-PB | 1..486 | 1..486 | 2727 | 100 | Plus |
CG32373-PA | 486 | CG32373-PA | 1..486 | 1..486 | 2727 | 100 | Plus |
frac-PG | 1427 | CG7526-PG | 248..461 | 124..318 | 560 | 48.4 | Plus |
frac-PF | 1427 | CG7526-PF | 248..461 | 124..318 | 560 | 48.4 | Plus |
frac-PG | 1427 | CG7526-PG | 636..1043 | 124..456 | 391 | 29.4 | Plus |
frac-PG | 1427 | CG7526-PG | 596..789 | 124..315 | 368 | 40.9 | Plus |
frac-PG | 1427 | CG7526-PG | 524..786 | 129..380 | 234 | 26.2 | Plus |
frac-PG | 1427 | CG7526-PG | 426..672 | 127..316 | 213 | 25.9 | Plus |