Clone Sequence Records
BO13005.3prime Sequence
625 bp (596 high quality bases) assembled on 2006-05-08
> BO13005.3prime
ATGGTCTAGAAAGCTTGCCGACAGATTGCTTTCGTTCAGGTCAAGGTTGC
CCTGGAAGAGCTCCTGGTTCGTCAGCAGCGGCACCTTGGCCACCTCGTGG
AATATTTTGTGCGAGTACTTGTTCCGTATCGTCTTGATGGTGGCCCGTGG
CTTGCGATGCAGTCCTGCATTGAGCGCGGTCACAATTTCAGCAAAGTCCG
CCAATTGATAGCCGGTGTAGTAGATAAGCGTCGATGTCCACGTCTGCTTG
TCCAGCTGCCCCGGACCGCCGTGCATACGCAGTGCCATGAACAGTGCGGC
CGAAGCCATCTGCGAGTCACTGAACGAAATATTGGCGTAATCCATGAGCG
ACAATTCCAGGATGTATCGAGCCAGGGTCAGCGTGGGCATAGGCACCTTG
GCGCATCGGGCATAGCGGCGCAGGAAACGGTACGAGAGCGGGATGCCCAG
ATCGTACTTGATAACGCGCAGCGTCTCCCCGCTCCATTCGCACCAGCTCG
TCGTGATTATAAGCACCATCGCAGATATACAAAAAATCCTCTATAAGCGG
CGGCTGGTCGCTCATCGTACTTGCAGGCAATAAAGAAGGCAGCGGCGCCC
AGAAGTTGCAGCTTCTCTTTGTTGA
BO13005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5814-PA | 1728 | CycB3-RA | 1265..1725 | 479..19 | 2305 | 100 | Minus |
| CG5814-PA | 1728 | CycB3-RA | 1189..1267 | 556..478 | 395 | 100 | Minus |
| CG5814-PA | 1728 | CycB3-RA | 1121..1189 | 625..557 | 345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-RB | 2883 | CG5814-RB | 1409..2013 | 625..19 | 2985 | 99.7 | Minus |
| CycB3-RA | 2461 | CG5814-RA | 1409..2013 | 625..19 | 2985 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24868804..24869408 | 19..625 | 2935 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:38:27 has no hits.
BO13005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:18 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-PA | 1122..1728 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:56 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5814-PA | 1122..1728 | 18..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:17:26 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 1410..2013 | 19..624 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:12:50 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 1410..2013 | 19..624 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:12:50 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24868804..24869407 | 19..624 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:17:26 Download gff for
BO13005.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20694526..20695129 | 19..624 | 99 | | Plus |
BO13005.5prime Sequence
799 bp (526 high quality bases) assembled on 2006-05-08
> BO13005.5prime
GAAGTTATCAGTCGACATGGCGCCCACAAAAGCAACAACGCGCGCGGCCA
TCACAAGCGGGCATCATCAGCTGCAGCAGGCAGTGAATCCCATCCTGGGA
GCCCTGGGAGCTGCCACTAGGAAGGGACTGACTCGGAGGGCGGCTGCCAC
GGGAAACATCGATCCGAATGTGGAGAATATGCAGACGCGCGCCAAACGCA
AGGCCGACCACAGTCCAATTAAAAATGACAAAATCAAGCGCTCGGCGCTG
GGTAACCTGACCAACAATGTTAAGATCATGACACTGCATCCGGCACAGGA
TGAGGAGCAGTCGGGCGTGGGCAAAAAGCCAACGGCCCAGCAGCTGCAGG
CCCTGATGGATGCTAAGAAACAGGAGAATCTCAGCGTAAATGTCTTTGGC
GCCAGTAAGATGACTACGCGCGCCTCCAGTAAAGTGGAGGATTCGGTGGA
GAACTGCCACAAAGTGCTCGATAAGCTGGAAGAGGCGTTGGCCAGGCCCA
AACCGCGCCCCAAGGCAGTGCCTGCCGCAAAAAAGACCGTTTTGGGGGAG
GTTCAGCTACCGGCCATGCCAAATCCTATGCAGATTCCCGTTTTACTGCC
GCCCACGCACAATCTGGCTGCTCCCCAGGTTGCCGCCGTCAAGCCAGTTC
GTCGGATCTCCAATGACTTCAACAAGACTGAGGACAGCCTGTACATGTCC
GCGCTGGAGGATGTCTCCAGTTGCGACTCCATGCGGCTGTCTGGAAACTT
TGAGGCGGCGCGACCTCGCTCCGCCAAGTTGCAGCAAAAACTGAGCAGC
BO13005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5814-PA | 1728 | CycB3-RA | 1..773 | 17..789 | 3840 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-RB | 2883 | CG5814-RB | 289..1072 | 17..799 | 3880 | 99.7 | Plus |
| CycB3-RA | 2461 | CG5814-RA | 289..1072 | 17..799 | 3880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24869745..24870528 | 799..17 | 3855 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:59:04 has no hits.
BO13005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:19 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-PA | 1..784 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:33:57 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5814-PA | 1..784 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:54 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 281..1072 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:57:39 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 281..1072 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:57:39 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24869745..24870536 | 9..799 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:54 Download gff for
BO13005.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20695467..20696258 | 9..799 | 99 | | Minus |
BO13005.complete Sequence
1759 bp assembled on 2008-01-17
GenBank Submission: FJ632646
> BO13005.complete
GAAGTTATCAGTCGACATGGCGCCCACAAAAGCAACAACGCGCGCGGCCA
TCACAAGCGGGCATCATCAGCTGCAGCAGGCAGTGAATCCCATCCTGGGA
GCCCTGGGAGCTGCCACTAGGAAGGGACTGACTCGGAGGGCGGCTGCCAC
GGGAAACATCGATCCGAATGTGGAGAATATGCAGACGCGCGCCAAACGCA
AGGCCGACCACAGTCCAATTAAAAATGACAAAATCAAGCGCTCGGCGCTG
GGTAACCTGACCAACAATGTTAAGATCATGACACTGCATCCGGCACAGGA
TGAGGAGCAGTCGGGCGTGGGCAAAAAGCCAACGGCCCAGCAGCTGCAGG
CCCTGATGGATGCTAAGAAACAGGAGAATCTCAGCGTAAATGTCTTTGGC
GCCAGTAAGATGACTACGCGCGCCTCCAGTAAAGTGGAGGATTCGGTGGA
GAACTGCCACAAAGTGCTCGATAAGCTGGAAGAGGCGTTGGCCAGGCCCA
AACCGCGCCCCAAGGCAGTGCCTGCCGCAAAAAAGACCGTTTTGGGGGAG
GTTCAGCTACCGGCCATGCCAAATCCTATGCAGATTCCCGTTTTACTGCC
GCCCACGCACAATCTGGCTGCTCCCCAGGTTGCCGCCGTCAAGCCAGTTC
GTCGGATCTCCAATGACTTCAACAAGACTGAGGACAGCCTGTACATGTCC
GCGCTGGAGGATGTCTCCAGTTGCGACTCCATGCGGCTGTCTGGAAACTT
TGAGGCGGCGCGACGTCGCTCCGCCAAGTTGCAGCAAAAGACTGAGCAGC
AGCCACAGCCGCTGTTGCTGACACTCCCAGAGACTGCTCCAAGCCAGGTG
GTGCCCATTCCGCCAGTGCCCGAGGAAGTAGAGGACTTCGACCGCAAGAA
CTGGGACGATCCCTTCCAGGTGTCCCACTACGCCATGGATATATTCAACT
ACCTCAAAGTGCGCGAAGCGGAATTCCCCATTGCCGACTATATGCCCAGG
CAGATCCATCTGACCACCTGGATGCGCACCCTGTTGGTCGACTGGATGGT
GGAGGTGCAGGAAACGTTCGAGCTGAACCACGAGACTCTGTACCTAGCGG
TTAAGATCGTCGATCTGTATCTCTGCCGCGAGGTGATCAACAAAGAGAAG
CTGCAACTTCTGGGCGCCGCTGCCTTCTTTATTGCCTGCAAGTACGATGA
GCGACAGCCGCCGCTTATAGAGGATTTTTTGTATATCTGCGATGGTGCTT
ATAATCACGACGAGCTGGTGCGAATGGAGCGGGAGACGCTGCGCGTTATC
AAGTACGATCTGGGCATCCCGCTCTCGTACCGTTTCCTGCGCCGCTATGC
CCGATGCGCCAAGGTGCCTATGCCCACGCTGACCCTGGCTCGATACATCC
TGGAATTGTCGCTCATGGATTACGCCAATATTTCGTTCAGTGACTCGCAG
ATGGCTTCGGCCGCACTGTTCATGGCACTGCGTATGCACGGCGGTCCGGG
GCAGCTGGACAAGCAGACGTGGACATCGACGCTTATCTACTACACCGGCT
ATCAATTGGCGGACTTTGCTGAAATTGTGACCGCGCTCAATGCAGGACTG
CATCGCAAGCCACGGGCCACCATCAAGACGATACGGAACAAGTACTCGCA
CAAAATATTCCACGAGGTGGCCAAGGTGCCGCTGCTGACGAACCAGGAGC
TCTTCCAGGGCAACCTTGACCTGAACGAAAGCAATCTGTCGGCAAGCTTT
CTAGACCAT
BO13005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-RB | 1728 | CG5814-PB | 1..1725 | 17..1741 | 8625 | 100 | Plus |
| CycB3-RA | 1728 | CG5814-PA | 1..1725 | 17..1741 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-RB | 2883 | CG5814-RB | 289..2013 | 17..1741 | 8625 | 100 | Plus |
| CycB3-RA | 2461 | CG5814-RA | 289..2013 | 17..1741 | 8625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24868804..24870528 | 1741..17 | 8625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:28:43 has no hits.
BO13005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:17 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 1..1728 | 17..1742 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:37 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 368..2092 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:45 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 289..2013 | 17..1743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:17 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 360..2092 | 9..1741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:45 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 289..2013 | 17..1743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:45 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24868802..24870528 | 17..1743 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:45 Download gff for
BO13005.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20694524..20696250 | 17..1743 | 99 | | Minus |
BO13005.pep Sequence
Translation from 16 to 1759
> BO13005.pep
MAPTKATTRAAITSGHHQLQQAVNPILGALGAATRKGLTRRAAATGNIDP
NVENMQTRAKRKADHSPIKNDKIKRSALGNLTNNVKIMTLHPAQDEEQSG
VGKKPTAQQLQALMDAKKQENLSVNVFGASKMTTRASSKVEDSVENCHKV
LDKLEEALARPKPRPKAVPAAKKTVLGEVQLPAMPNPMQIPVLLPPTHNL
AAPQVAAVKPVRRISNDFNKTEDSLYMSALEDVSSCDSMRLSGNFEAARR
RSAKLQQKTEQQPQPLLLTLPETAPSQVVPIPPVPEEVEDFDRKNWDDPF
QVSHYAMDIFNYLKVREAEFPIADYMPRQIHLTTWMRTLLVDWMVEVQET
FELNHETLYLAVKIVDLYLCREVINKEKLQLLGAAAFFIACKYDERQPPL
IEDFLYICDGAYNHDELVRMERETLRVIKYDLGIPLSYRFLRRYARCAKV
PMPTLTLARYILELSLMDYANISFSDSQMASAALFMALRMHGGPGQLDKQ
TWTSTLIYYTGYQLADFAEIVTALNAGLHRKPRATIKTIRNKYSHKIFHE
VAKVPLLTNQELFQGNLDLNESNLSASFLDH
BO13005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-PB | 575 | CG5814-PB | 1..575 | 1..575 | 2958 | 100 | Plus |
| CycB3-PA | 575 | CG5814-PA | 1..575 | 1..575 | 2958 | 100 | Plus |
| CycB-PC | 500 | CG3510-PC | 210..480 | 288..552 | 405 | 36.1 | Plus |
| CycB-PB | 524 | CG3510-PB | 234..504 | 288..552 | 405 | 36.1 | Plus |
| CycB-PE | 528 | CG3510-PE | 238..508 | 288..552 | 405 | 36.1 | Plus |
