Clone BO13010 Report

Search the DGRC for BO13010

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG11221-RA
Protein status:BO13010.pep:
Sequenced Size:1402

Clone Sequence Records

BO13010.3prime Sequence

603 bp (601 high quality bases) assembled on 2006-05-08

> BO13010.3prime
ATGGTCTAGAAAGCTTGCCTGCAACAGATCCAGTGCGTGCAGACTCTCCA
CGTCCGGATCAAAGTTGGCGTCGCAGGTGGAGAGCCAGTCCCATACCCGC
CGCCGCACCATCGCCTGGTCGATGGGTATATCCAGACCGTAGGTGGACAT
CATCCGCTTGAAGCGCAGCTTGTTCTCATCCCCGGAGAGACGACCCTCCC
GCTGGTTGAGGTAGATGCAGGAGTCCTGGTCGTGATTGGTGGGCGAGATG
AGGGTGGCCGACTTGGAGGTGGAGATGCGACACTCCACCCAGCGGTCCTT
CATATACTTGGCCACCTCGGTGATCTTGCAGCGGTCCTCGGGATCGTGGC
TCAGATACTTCCGGAAGCAGCGCATCAGCCGCGGCGAGAAGCGCCGGAAA
TTGTCCGGCACTTTGGTGGTCTTGCGCTGCTCGTACTTCATGAAGTTGGC
ATAGGACTGGTCCTTCACCCAATCGGCCGACTGCCATGGAGGATTGCCGG
TGAGGATGTTGTACAGCAGGATGCCGAACTGCCAGGAATCGCTGACGGGC
AGGCACTGGAAGCGTTCGTTCTTGATCAGCTCCAGCTTGCTCCGGCGGCA
CGC

BO13010.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-PA 1371 CG11221-RA 800..1368 587..19 2845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-RB 2722 CG11221-RB 1300..1883 603..19 2900 99.8 Minus
CG11221-RA 1979 CG11221-RA 1300..1883 603..19 2900 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6754711..6755294 603..19 2875 99.8 Minus
Blast to na_te.dros performed on 2015-02-08 12:54:25 has no hits.

BO13010.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:23 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-PA 785..1371 18..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:03 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-PA 785..1371 18..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:41:23 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 1300..1889 11..603 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:40 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 1300..1889 11..603 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:40 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6754711..6755300 11..603 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:41:23 Download gff for BO13010.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6754711..6755300 11..603 99   Minus

BO13010.5prime Sequence

713 bp (642 high quality bases) assembled on 2006-05-08

> BO13010.5prime
GAAGTTATCAGTCGACATGGGCACTATCGAGAAACGCTCATTCTCCTTCC
GGCTGCGTCGATCCTTCGGCGACGGTGGTAGCACCAACAGCCGCAATAGC
AACAACAACAGCAGCACCTGCACCAACCACAACAACCAGAAGCGATGCAG
CACTCCGCTGACGCCGACGAGCACCAGCACGGGTCGACTGGAGGTGCCTG
GAGCGGCCAGCGTGAGCCGCCGGAGCAGCATCTACAAGAAGCCGGACAAG
AATGACGGCGGACAGATCCATCTCATTCCGGACGTGGAGCTGCCGCTGAT
GACCTTCGCCGACCAGTACAACATAGAGAAGACGCTGGCCGAGGGCTGTT
TCGCCAAGATACTGCTGTGCCGGCATAGACCCACCAATACGCTGGTGGTG
CTGAAGGCGGTGCACGCCGAGCTGACCACGATCAAGGAGTTCCAGAAGGA
GTTCCACTACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCAT
ATGCGGTGGCTTTCCAGACAATGGACTACTACGTGTTCGCCATGGAGCAC
GCCCCCTACGGCGATCTGGCCTCCAACATCGGACCCAACGGCCTGCACGA
GAACGCCTGCAAACTGATCTCGGAGCAGTTGAGCTCCGCCCTCGGCTTCA
TGCACCTCCAAGAATCTGGTGCATCGCGACCTGAAGATCGAAAATATCCT
GGTCTTCACGCCG

BO13010.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-PA 1371 CG11221-RA 1..639 17..655 3195 100 Plus
CG11221-PA 1371 CG11221-RA 639..696 656..713 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-RB 2722 CG11221-RB 516..1211 17..713 3460 99.9 Plus
CG11221-RA 1979 CG11221-RA 516..1211 17..713 3460 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6753939..6754622 29..713 3375 99.9 Plus
Blast to na_te.dros performed on 2015-02-13 02:17:36 has no hits.

BO13010.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:24 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-PA 1..696 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:04 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-PA 1..696 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:37 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 507..1211 8..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:44:06 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 507..1211 8..713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:44:06 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6753940..6754622 30..713 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:37 Download gff for BO13010.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6753940..6754622 30..713 99   Plus

BO13010.complete Sequence

1402 bp assembled on 2008-01-17

GenBank Submission: FJ632647

> BO13010.complete
GAAGTTATCAGTCGACATGGGCACTATCGAGAAACGCTCATTCTCCTTCC
GGCTGCGTCGATCCTTCGGCGACGGTGGTAGCACCAACAGCCGCAATAGC
AACAACAACAGCAGCACCTGCACCAACCACAACAACCAGAAGCGATGCAG
CACTCCGCTGACGCCGACGAGCACCAGCACGGGTCGACTGGAGGTGCCTG
GAGCGGCCAGCGTGAGCCGCCGGAGCAGCATCTACAAGAAGCCGGACAAG
AATGACGGCGGACAGATCCATCTCATTCCGGACGTGGAGCTGCCGCTGAT
GACCTTCGCCGACCAGTACAACATAGAGAAGACGCTGGCCGAGGGCTGTT
TCGCCAAGATACTGCTGTGCCGGCATAGACCCACCAATACGCTGGTGGTG
CTGAAGGCGGTGCACGCCGAGCTGACCACGATCAAGGAGTTCCAGAAGGA
GTTCCACTACAACTACGAGCTGTCGCATCACCATCACATACTGAGCGCAT
ATGCGGTGGCTTTCCAGACAATGGACTACTACGTGTTCGCCATGGAGCAC
GCCCCCTACGGCGATCTGGCCTCCAACATCGGACCCAACGGCCTGCACGA
GAACGCCTGCAAACTGATCTCGGAGCAGTTGAGCTCCGCCCTCGGCTTCA
TGCACTCCAAGAATCTGGTGCATCGCGACCTGAAGATCGAAAATATCCTG
GTCTTCACGCCGGACTTTACGCGCGTGAAGCTGTGCGACTTTGGGGCCAC
CACGAAGAAGGGTCTGCTGGTGCACAAGGTGAAGCACACGTGGACCAGCT
GCGTGCCGCCGGAGCAGCTGGAGCTGATCAAGAACGAACGCTTCCAGTGC
CTGCCCGTCAGCGATTCCTGGCAGTTCGGCATCCTGCTGTACAACATCCT
CACCGGCAATCCTCCATGGCAGTCGGCCGATTGGGTGAAGGACCAGTCCT
ATGCCAACTTCATGAAGTACGAGCAGCGCAAGACCACCAAAGTGCCGGAC
AATTTCCGGCGCTTCTCGCCGCGGCTGATGCGCTGCTTCCGGAAGTATCT
GAGCCACGATCCCGAGGACCGCTGCAAGATCACCGAGGTGGCCAAGTATA
TGAAGGACCGCTGGGTGGAGTGTCGCATCTCCACCTCCAAGTCGGCCACC
CTCATCTCGCCCACCAATCACGACCAGGACTCCTGCATCTACCTCAACCA
GCGGGAGGGTCGTCTCTCCGGGGATGAGAACAAGCTGCGCTTCAAGCGGA
TGATGTCCACCTACGGTCTGGATATACCCATCGACCAGGCGATGGTGCGG
CGGCGGGTATGGGACTGGCTCTCCACCTGCGACGCCAACTTTGATCCGGA
CGTGGAGAGTCTGCACGCACTGGATCTGTTGCAGGCAAGCTTTCTAGACC
AT

BO13010.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-RB 1371 CG11221-PB 1..1368 17..1384 6840 100 Plus
CG11221-RA 1371 CG11221-PA 1..1368 17..1384 6840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-RB 2722 CG11221-RB 516..1883 17..1384 6840 100 Plus
CG11221-RA 1979 CG11221-RA 516..1883 17..1384 6840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6753939..6755294 29..1384 6780 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:26:15 has no hits.

BO13010.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:18 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 1..1371 17..1385 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:43 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 510..1877 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:56 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 516..1883 17..1386 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:18 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 501..1883 8..1392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:14 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
CG11221-RA 516..1883 17..1386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:14 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6753940..6755294 30..1386 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:56 Download gff for BO13010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6753940..6755294 30..1386 99   Plus

BO13010.pep Sequence

Translation from 16 to 1402

> BO13010.pep
MGTIEKRSFSFRLRRSFGDGGSTNSRNSNNNSSTCTNHNNQKRCSTPLTP
TSTSTGRLEVPGAASVSRRSSIYKKPDKNDGGQIHLIPDVELPLMTFADQ
YNIEKTLAEGCFAKILLCRHRPTNTLVVLKAVHAELTTIKEFQKEFHYNY
ELSHHHHILSAYAVAFQTMDYYVFAMEHAPYGDLASNIGPNGLHENACKL
ISEQLSSALGFMHSKNLVHRDLKIENILVFTPDFTRVKLCDFGATTKKGL
LVHKVKHTWTSCVPPEQLELIKNERFQCLPVSDSWQFGILLYNILTGNPP
WQSADWVKDQSYANFMKYEQRKTTKVPDNFRRFSPRLMRCFRKYLSHDPE
DRCKITEVAKYMKDRWVECRISTSKSATLISPTNHDQDSCIYLNQREGRL
SGDENKLRFKRMMSTYGLDIPIDQAMVRRRVWDWLSTCDANFDPDVESLH
ALDLLQASFLDH

BO13010.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11221-PB 456 CG11221-PB 1..456 1..456 2447 100 Plus
CG11221-PA 456 CG11221-PA 1..456 1..456 2447 100 Plus
CG4945-PD 533 CG4945-PD 3..355 78..437 574 33 Plus
CG4945-PA 551 CG4945-PA 3..355 78..437 574 33 Plus
CG4945-PC 577 CG4945-PC 3..355 78..437 574 33 Plus