Clone Sequence Records
BO13011.5prime Sequence
547 bp (546 high quality bases) assembled on 2006-05-08
> BO13011.5prime
GAAGTTATCAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTG
BO13011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8593-PA | 1017 | qm-RA | 1..531 | 17..547 | 2655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 2543 | CG8593-RB | 298..828 | 17..547 | 2655 | 100 | Plus |
qm-RA | 1934 | CG8593-RA | 298..828 | 17..547 | 2655 | 100 | Plus |
qm-RC | 2507 | CG8593-RC | 519..792 | 274..547 | 1370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7351465..7351631 | 381..547 | 835 | 100 | Plus |
3L | 28110227 | 3L | 7348861..7349017 | 81..237 | 785 | 100 | Plus |
3L | 28110227 | 3L | 7351269..7351414 | 238..383 | 730 | 100 | Plus |
3L | 28110227 | 3L | 7348610..7348675 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:58:11 has no hits.
BO13011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:52:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:05 Download gff for
BO13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8593-PA | 1..531 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:51 Download gff for
BO13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..828 | 17..547 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:50 Download gff for
BO13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..828 | 17..547 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:50 Download gff for
BO13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7348610..7348675 | 17..82 | 100 | -> | Plus |
3L | 7348863..7349017 | 83..237 | 100 | -> | Plus |
3L | 7351269..7351413 | 238..382 | 100 | -> | Plus |
3L | 7351467..7351631 | 383..547 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:51 Download gff for
BO13011.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7341710..7341775 | 17..82 | 100 | -> | Plus |
arm_3L | 7341963..7342117 | 83..237 | 100 | -> | Plus |
arm_3L | 7344369..7344513 | 238..382 | 100 | -> | Plus |
arm_3L | 7344567..7344731 | 383..547 | 100 | | Plus |
BO13011.complete Sequence
1048 bp assembled on 2010-07-02
GenBank Submission: KX797463
> BO13011.complete
GAAGTTATCAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTC
AGCTCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTA
CTTTCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGG
AGAACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCG
GTAATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACAT
ATTACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCT
TGTTGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCG
CTCGACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTA
CATGGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCG
CCAGCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGC
AGCCCCAACCAGAACACGCTCAATTGCAATGCAAGCTTTCTAGACCAT
BO13011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 1017 | CG8593-PB | 1..1014 | 17..1030 | 5070 | 100 | Plus |
qm-RA | 1017 | CG8593-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
qm-RC | 981 | CG8593-PC | 222..978 | 274..1030 | 3785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-RB | 2543 | CG8593-RB | 298..1311 | 17..1030 | 5070 | 100 | Plus |
qm-RA | 1934 | CG8593-RA | 298..1311 | 17..1030 | 5070 | 100 | Plus |
qm-RC | 2507 | CG8593-RC | 519..1275 | 274..1030 | 3785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7351465..7351727 | 381..643 | 1315 | 100 | Plus |
3L | 28110227 | 3L | 7352233..7352390 | 873..1030 | 790 | 100 | Plus |
3L | 28110227 | 3L | 7348861..7349017 | 81..237 | 785 | 100 | Plus |
3L | 28110227 | 3L | 7351269..7351414 | 238..383 | 730 | 100 | Plus |
3L | 28110227 | 3L | 7351971..7352100 | 747..876 | 650 | 100 | Plus |
3L | 28110227 | 3L | 7351793..7351897 | 642..746 | 525 | 100 | Plus |
3L | 28110227 | 3L | 7348610..7348675 | 17..82 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:23:49 has no hits.
BO13011.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:48 Download gff for
BO13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 296..1309 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:22 Download gff for
BO13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..1311 | 17..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:23 Download gff for
BO13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
qm-RA | 298..1311 | 17..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:23 Download gff for
BO13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7351467..7351727 | 383..643 | 100 | -> | Plus |
3L | 7351795..7351897 | 644..746 | 100 | -> | Plus |
3L | 7351971..7352098 | 747..874 | 100 | -> | Plus |
3L | 7352235..7352390 | 875..1032 | 98 | | Plus |
3L | 7348863..7349017 | 83..237 | 100 | -> | Plus |
3L | 7351269..7351413 | 238..382 | 100 | -> | Plus |
3L | 7348610..7348675 | 17..82 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:22 Download gff for
BO13011.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7345071..7345198 | 747..874 | 100 | -> | Plus |
arm_3L | 7344895..7344997 | 644..746 | 100 | -> | Plus |
arm_3L | 7341710..7341775 | 17..82 | 100 | -> | Plus |
arm_3L | 7341963..7342117 | 83..237 | 100 | -> | Plus |
arm_3L | 7344369..7344513 | 238..382 | 100 | -> | Plus |
arm_3L | 7344567..7344827 | 383..643 | 100 | -> | Plus |
arm_3L | 7345335..7345490 | 875..1032 | 98 | | Plus |
BO13011.pep Sequence
Translation from 16 to 1048
> BO13011.pep
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCNASFLDH
BO13011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
qm-PB | 338 | CG8593-PB | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PA | 338 | CG8593-PA | 1..338 | 1..338 | 1732 | 100 | Plus |
qm-PC | 326 | CG8593-PC | 1..326 | 1..338 | 1650 | 96.4 | Plus |
qless-PB | 436 | CG31005-PB | 182..424 | 57..299 | 158 | 24.7 | Plus |
qless-PA | 436 | CG31005-PA | 182..424 | 57..299 | 158 | 24.7 | Plus |