Clone BO13011 Report

Search the DGRC for BO13011

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:11
Vector:pDNR-Dual
Associated Gene/Transcriptqm-RA
Protein status:BO13011.pep: Imported from assembly
Sequenced Size:1048

Clone Sequence Records

BO13011.5prime Sequence

547 bp (546 high quality bases) assembled on 2006-05-08

> BO13011.5prime
GAAGTTATCAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTG

BO13011.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8593-PA 1017 qm-RA 1..531 17..547 2655 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 2543 CG8593-RB 298..828 17..547 2655 100 Plus
qm-RA 1934 CG8593-RA 298..828 17..547 2655 100 Plus
qm-RC 2507 CG8593-RC 519..792 274..547 1370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7351465..7351631 381..547 835 100 Plus
3L 28110227 3L 7348861..7349017 81..237 785 100 Plus
3L 28110227 3L 7351269..7351414 238..383 730 100 Plus
3L 28110227 3L 7348610..7348675 17..82 330 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:58:11 has no hits.

BO13011.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-18 05:52:25 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:05 Download gff for BO13011.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8593-PA 1..531 17..547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:51 Download gff for BO13011.5prime
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..828 17..547 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:54:50 Download gff for BO13011.5prime
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..828 17..547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:54:50 Download gff for BO13011.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7348610..7348675 17..82 100 -> Plus
3L 7348863..7349017 83..237 100 -> Plus
3L 7351269..7351413 238..382 100 -> Plus
3L 7351467..7351631 383..547 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:51 Download gff for BO13011.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7341710..7341775 17..82 100 -> Plus
arm_3L 7341963..7342117 83..237 100 -> Plus
arm_3L 7344369..7344513 238..382 100 -> Plus
arm_3L 7344567..7344731 383..547 100   Plus

BO13011.complete Sequence

1048 bp assembled on 2010-07-02

GenBank Submission: KX797463

> BO13011.complete
GAAGTTATCAGTCGACATGGAAGAACTGAACATCATATTACAGAAGACCA
AAGATAAATCAACGCAAAAGGAGCAGGATGAGATTCTGCTGCAGCCCTTT
ACATACATACAACAGATTCCTGGCAAGCAATTCCGCTCTGAGTTGGCCTT
GGCCTTCAATCACTGGTTGCTCATACCGGGCGAAAAGTTGGCGCAGATCG
GAGACATTGTGCAGATGCTGCACAATTCCAGTTTGCTCATTGATGATATT
GAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGGCGCATTCCATCTA
CGGCGTGGCCAGCACCATAAATGCGGCCAACTATGCACTCTTTCTGGCGC
TGGAGAAGGTGCAGCAGCTGGATCATCCGGAGGCTACCAAGGTGTACACC
GAACAATTGCTGGAGCTGCACCGTGGACAGGGCATGGAGATCTATTGGCG
CGACAGCTTCACGTGTCCATCCGAGTCGGATTACAAGCTGATGACTGTGC
GCAAAACTGGCGGCCTCTTTATGCTGGCCATTCGCCTTATGCAGCTGTTC
AGCTCCAACAAGGAGGACTATTCGAAGTTGACGGCTATATTGGGCCTGTA
CTTTCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGTACACGG
AGAACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGGCTTCCCG
GTAATCCATGCGGTTCGCACCCAAAAGCAGGATAAACAGGTTCTACACAT
ATTACGCCAGCGCACGCACGACATTGAGGTCAAGAAGTACTGCATCACCT
TGTTGGAAAAGCTGGGCAGCTTTCAGTATACACGCAAGGTTCTGGAGTCG
CTCGACGCAGAGGCTCGGTCGGAGGTGGCTCGTTTGGGTAGCAATCCGTA
CATGGACCGCCTGCTCAACAAGCTGCTGTCGTGGAAGACGAGCGATAGCG
CCAGCATCACGCAGTCGAACCAGATCAATCACAACAACGTCTCACGCAGC
AGCCCCAACCAGAACACGCTCAATTGCAATGCAAGCTTTCTAGACCAT

BO13011.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 1017 CG8593-PB 1..1014 17..1030 5070 100 Plus
qm-RA 1017 CG8593-PA 1..1014 17..1030 5070 100 Plus
qm-RC 981 CG8593-PC 222..978 274..1030 3785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
qm-RB 2543 CG8593-RB 298..1311 17..1030 5070 100 Plus
qm-RA 1934 CG8593-RA 298..1311 17..1030 5070 100 Plus
qm-RC 2507 CG8593-RC 519..1275 274..1030 3785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7351465..7351727 381..643 1315 100 Plus
3L 28110227 3L 7352233..7352390 873..1030 790 100 Plus
3L 28110227 3L 7348861..7349017 81..237 785 100 Plus
3L 28110227 3L 7351269..7351414 238..383 730 100 Plus
3L 28110227 3L 7351971..7352100 747..876 650 100 Plus
3L 28110227 3L 7351793..7351897 642..746 525 100 Plus
3L 28110227 3L 7348610..7348675 17..82 330 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:23:49 has no hits.

BO13011.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:48 Download gff for BO13011.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 296..1309 17..1032 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:22 Download gff for BO13011.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..1311 17..1032 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:23 Download gff for BO13011.complete
Subject Subject Range Query Range Percent Splice Strand
qm-RA 298..1311 17..1032 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:23 Download gff for BO13011.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7351467..7351727 383..643 100 -> Plus
3L 7351795..7351897 644..746 100 -> Plus
3L 7351971..7352098 747..874 100 -> Plus
3L 7352235..7352390 875..1032 98   Plus
3L 7348863..7349017 83..237 100 -> Plus
3L 7351269..7351413 238..382 100 -> Plus
3L 7348610..7348675 17..82 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:22 Download gff for BO13011.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7345071..7345198 747..874 100 -> Plus
arm_3L 7344895..7344997 644..746 100 -> Plus
arm_3L 7341710..7341775 17..82 100 -> Plus
arm_3L 7341963..7342117 83..237 100 -> Plus
arm_3L 7344369..7344513 238..382 100 -> Plus
arm_3L 7344567..7344827 383..643 100 -> Plus
arm_3L 7345335..7345490 875..1032 98   Plus

BO13011.pep Sequence

Translation from 16 to 1048

> BO13011.pep
MEELNIILQKTKDKSTQKEQDEILLQPFTYIQQIPGKQFRSELALAFNHW
LLIPGEKLAQIGDIVQMLHNSSLLIDDIEDNSILRRGVPVAHSIYGVAST
INAANYALFLALEKVQQLDHPEATKVYTEQLLELHRGQGMEIYWRDSFTC
PSESDYKLMTVRKTGGLFMLAIRLMQLFSSNKEDYSKLTAILGLYFQIRD
DYCNLSLKEYTENKSFAEDLTEGKFGFPVIHAVRTQKQDKQVLHILRQRT
HDIEVKKYCITLLEKLGSFQYTRKVLESLDAEARSEVARLGSNPYMDRLL
NKLLSWKTSDSASITQSNQINHNNVSRSSPNQNTLNCNASFLDH

BO13011.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
qm-PB 338 CG8593-PB 1..338 1..338 1732 100 Plus
qm-PA 338 CG8593-PA 1..338 1..338 1732 100 Plus
qm-PC 326 CG8593-PC 1..326 1..338 1650 96.4 Plus
qless-PB 436 CG31005-PB 182..424 57..299 158 24.7 Plus
qless-PA 436 CG31005-PA 182..424 57..299 158 24.7 Plus