Clone Sequence Records
BO13012.5prime Sequence
846 bp (761 high quality bases) assembled on 2006-05-08
> BO13012.5prime
GAAGTTATCAGTCGACATGGGTGGACAAAAAGCAACCATCCTCGCTGCCG
TGGCGCTGGTGATCGCCTGTGCCGCTCCAGCAATAGCCGATGTGAATGTC
ACCGCCTTGTGCCTGCTGGTCAGCAATGGGAACTACGTGGCCAGCCAGTC
GGACTGCTCGACCTACTACCAGTGCCAGGGATCCTCGTTCACGGCCATGT
CCTGTCCCCAGGGCTACTACTTCGACAAGAATGCCCAGCAGTGCACGGGC
ACTGTGCCGAGCACCTGCACCAGCAACTCCGATCCCTGTCTGGGCAAGGC
GGTGGGATCCTTCGCGGCATCCAGTTCGTCCTGCGGCGGCTACTACTACT
GCGGAGCCTCCGGCGCTGTGAGGGGCAATTGTCCTGCCGGCGAGAACTTC
AATCCCACCACAATGGCCTGTGTGTACAAGAACAACTATCCATGCAGCGA
GTCCGCCGGTGATGGCTCCACTGTGTCGGTCGCCCTCAACCTATGCAATC
TTGTCAAGAATGGCTTTTACTTTGGAAGCCCTTCCGACTGCAGTGGCTGG
AACTTCTGCCAGGACAACGTTCTGCACTCGGGATCCTGCGAAGATGGTCT
AGTATTCAATGTGCAGGCCAGCAACTGCGGCTACAAGATGGCCTCATCCT
GCGCCCAGGTCACCAATGATCCATCCCTGACCGGAGTGTCTGCTCCGACC
ACATGCTCCTCGTCGGGAGCAACGATCGCAGCCACCGCGTGCAACCAGTA
CTACCTGTGCTCCGCCGGCAACTATCAGCTGATGACCTGCCCCTCGGGAT
ACTAACTATGATACCATCTCCGAAGCGTGTGTGAACAGGAATGGAA
BO13012.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7290-PA | 1260 | CG7290-RA | 1..788 | 17..804 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7290-RB | 1667 | CG7290-RB | 46..873 | 17..846 | 4040 | 99.4 | Plus |
CG7290-RA | 1358 | CG7290-RA | 46..873 | 17..846 | 4040 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20205108..20205927 | 840..20 | 3995 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:57:27 has no hits.
BO13012.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:26 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-PA | 1..826 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:06 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-PA | 1..826 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:47 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 46..873 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:55 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 46..873 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:55 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20205103..20205931 | 12..846 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:47 Download gff for
BO13012.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20198203..20199031 | 12..846 | 98 | | Minus |
BO13012.complete Sequence
1291 bp assembled on 2008-01-17
GenBank Submission: FJ632648
> BO13012.complete
GAAGTTATCAGTCGACATGGGTGGACAAAAAGCAACCATCCTCGCTGCCG
TGGCGCTGGTGATCGCCTGTGCCGCTCCAGCAATAGCCGATGTGAATGTC
ACCGCCTTGTGCCTGCTGGTCAGCAATGGGAACTACGTGGCCAGCCAGTC
GGACTGCTCGACCTACTACCAGTGCCAGGGATCCTCGTTCACGGCCATGT
CCTGTCCCCAGGGCTACTACTTCGACAAGAATGCCCAGCAGTGCACGGGC
ACTGTGCCGAGCACCTGCACCAGCAACTCCGATCCCTGTCTGGGCAAGGC
GGTGGGATCCTTCGCGGCATCCAGTTCGTCCTGCGGCGGCTACTACTACT
GCGGAGCCTCCGGCGCTGTGAGGGGCAATTGTCCTGCCGGCGAGAACTTC
AATCCCACCACAATGGCCTGTGTGTACAAGAACAACTATCCATGCAGCGA
GTCCGCCGGTGATGGCTCCACTGTGTCGGTCGCCCTCAACCTATGCAATC
TTGTCAAGAATGGCTTTTACTTTGGAAGCCCTTCCGACTGCAGTGGCTGG
AACTTCTGCCAGGACAACGTTCTGCACTCGGGATCCTGCGAAGATGGTCT
AGTATTCAATGTGCAGGCCAGCAACTGCGGCTACAAGATGGCCTCATCCT
GCGCCCAGGTCACCAATGATCCATCCCTGACCGGAGTGTCTGCTCCGACC
ACATGCTCCTCGTCGGGAGCAACGATCGCAGCCACCGCGTGCAACCAGTA
CTACCTGTGCTCCGCCGGCAACTATCAGCTGATGACCTGCCCCTCGGGAT
ACTACTATGATACCATCTCGAAGGCGTGTGTGACCAGGATGGAAGCGAGG
AACGACTGCGACAGATGTGTGGGCACCACTGCGACCTTTGTAAACGCCTA
CTCGGCAACCAATTGCTCTGATTACCTATACTGCGTGAACGGCGTTCAGA
AGGCCGTGGAGAGCTGCCCCACCAACTACTACTTCAACGAGAACCTCGGA
TCCTGCGTAAACGGGTTGGAGCCCAAGTTCCTCTGCTGCAATCCCACGCA
AAGCGATGGAACTTCGACGTCTTCCTCTGGTTCGACTTCCTCGGGCTCGA
CTTCCTCCGGATCGACTTCCTCTGGGTCAACTTCCTCCGGCTCGACTTCC
TCTGGCTCGACTTCCTCGGGCTCGACTTCCTCTGGCTCGACTTCCTCGGG
CTCGACTTCCTCCGGCTCGACTTCCTCTGGAACTTCATCCACAACCTCTA
CTGGAACAAGTTCAGACAAAAAAGCAAGCTTTCTAGACCAT
BO13012.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7290-RB | 1260 | CG7290-PB | 1..1257 | 17..1273 | 6285 | 100 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1..1257 | 17..1273 | 6285 | 100 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1181 | 1101..1227 | 485 | 92.1 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1085..1211 | 1071..1197 | 485 | 92.1 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1085..1211 | 1071..1197 | 485 | 92.1 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1181 | 1101..1227 | 485 | 92.1 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1169 | 1116..1230 | 410 | 90.4 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1100..1214 | 1071..1185 | 410 | 90.4 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1169 | 1116..1230 | 410 | 90.4 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1100..1214 | 1071..1185 | 410 | 90.4 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1151 | 1131..1227 | 350 | 90.7 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1115..1211 | 1071..1167 | 350 | 90.7 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1151 | 1131..1227 | 350 | 90.7 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1115..1211 | 1071..1167 | 350 | 90.7 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1139 | 1146..1230 | 335 | 92.9 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1130..1214 | 1071..1155 | 335 | 92.9 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1139 | 1146..1230 | 335 | 92.9 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1130..1214 | 1071..1155 | 335 | 92.9 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1109 | 1176..1230 | 245 | 96.4 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1160..1214 | 1071..1125 | 245 | 96.4 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1160..1214 | 1071..1125 | 245 | 96.4 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1109 | 1176..1230 | 245 | 96.4 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1055..1121 | 1161..1227 | 215 | 88.1 | Plus |
CG7290-RB | 1260 | CG7290-PB | 1145..1211 | 1071..1137 | 215 | 88.1 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1055..1121 | 1161..1227 | 215 | 88.1 | Plus |
CG7290-RA | 1260 | CG7290-PA | 1145..1211 | 1071..1137 | 215 | 88.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7290-RB | 1667 | CG7290-RB | 46..1302 | 17..1273 | 6285 | 100 | Plus |
CG7290-RA | 1358 | CG7290-RA | 46..1302 | 17..1273 | 6285 | 100 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1226 | 1101..1227 | 485 | 92.1 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1130..1256 | 1071..1197 | 485 | 92.1 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1226 | 1101..1227 | 485 | 92.1 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1130..1256 | 1071..1197 | 485 | 92.1 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1214 | 1116..1230 | 410 | 90.4 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1145..1259 | 1071..1185 | 410 | 90.4 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1214 | 1116..1230 | 410 | 90.4 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1145..1259 | 1071..1185 | 410 | 90.4 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1196 | 1131..1227 | 350 | 90.7 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1160..1256 | 1071..1167 | 350 | 90.7 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1196 | 1131..1227 | 350 | 90.7 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1160..1256 | 1071..1167 | 350 | 90.7 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1175..1259 | 1071..1155 | 335 | 92.9 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1184 | 1146..1230 | 335 | 92.9 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1184 | 1146..1230 | 335 | 92.9 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1175..1259 | 1071..1155 | 335 | 92.9 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1154 | 1176..1230 | 245 | 96.4 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1205..1259 | 1071..1125 | 245 | 96.4 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1154 | 1176..1230 | 245 | 96.4 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1205..1259 | 1071..1125 | 245 | 96.4 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1100..1166 | 1161..1227 | 215 | 88.1 | Plus |
CG7290-RB | 1667 | CG7290-RB | 1190..1256 | 1071..1137 | 215 | 88.1 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1100..1166 | 1161..1227 | 215 | 88.1 | Plus |
CG7290-RA | 1358 | CG7290-RA | 1190..1256 | 1071..1137 | 215 | 88.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20204674..20205927 | 1273..20 | 6270 | 100 | Minus |
3L | 28110227 | 3L | 20204720..20204846 | 1197..1071 | 485 | 92.1 | Minus |
3L | 28110227 | 3L | 20204750..20204876 | 1227..1101 | 485 | 92.1 | Minus |
3L | 28110227 | 3L | 20204717..20204831 | 1185..1071 | 410 | 90.4 | Minus |
3L | 28110227 | 3L | 20204762..20204876 | 1230..1116 | 410 | 90.4 | Minus |
3L | 28110227 | 3L | 20204720..20204816 | 1167..1071 | 350 | 90.7 | Minus |
3L | 28110227 | 3L | 20204780..20204876 | 1227..1131 | 350 | 90.7 | Minus |
3L | 28110227 | 3L | 20204717..20204801 | 1155..1071 | 335 | 92.9 | Minus |
3L | 28110227 | 3L | 20204792..20204876 | 1230..1146 | 335 | 92.9 | Minus |
3L | 28110227 | 3L | 20204717..20204771 | 1125..1071 | 245 | 96.4 | Minus |
3L | 28110227 | 3L | 20204822..20204876 | 1230..1176 | 245 | 96.4 | Minus |
3L | 28110227 | 3L | 20204720..20204786 | 1137..1071 | 215 | 88.1 | Minus |
3L | 28110227 | 3L | 20204810..20204876 | 1227..1161 | 215 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:02:15 has no hits.
BO13012.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:20 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 1..1260 | 17..1277 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:36 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 43..1293 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:55 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 46..1296 | 17..1267 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:20 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 43..1305 | 17..1282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:53 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7290-RA | 46..1296 | 17..1267 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:53 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20204680..20205928 | 17..1267 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:55 Download gff for
BO13012.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20197780..20199028 | 17..1267 | 99 | | Minus |
BO13012.pep Sequence
Translation from 16 to 1291
> BO13012.pep
MGGQKATILAAVALVIACAAPAIADVNVTALCLLVSNGNYVASQSDCSTY
YQCQGSSFTAMSCPQGYYFDKNAQQCTGTVPSTCTSNSDPCLGKAVGSFA
ASSSSCGGYYYCGASGAVRGNCPAGENFNPTTMACVYKNNYPCSESAGDG
STVSVALNLCNLVKNGFYFGSPSDCSGWNFCQDNVLHSGSCEDGLVFNVQ
ASNCGYKMASSCAQVTNDPSLTGVSAPTTCSSSGATIAATACNQYYLCSA
GNYQLMTCPSGYYYDTISKACVTRMEARNDCDRCVGTTATFVNAYSATNC
SDYLYCVNGVQKAVESCPTNYYFNENLGSCVNGLEPKFLCCNPTQSDGTS
TSSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSG
STSSGTSSTTSTGTSSDKKASFLDH
BO13012.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7290-PB | 419 | CG7290-PB | 1..419 | 1..419 | 2239 | 100 | Plus |
CG7290-PA | 419 | CG7290-PA | 1..419 | 1..419 | 2239 | 100 | Plus |
CG7298-PA | 369 | CG7298-PA | 8..368 | 6..359 | 526 | 33.8 | Plus |
CG6996-PC | 364 | CG6996-PC | 24..358 | 27..367 | 400 | 29.3 | Plus |
CG6996-PB | 364 | CG6996-PB | 24..358 | 27..367 | 400 | 29.3 | Plus |
CG6996-PC | 364 | CG6996-PC | 16..288 | 152..424 | 180 | 23.2 | Plus |
CG6996-PC | 364 | CG6996-PC | 135..357 | 21..240 | 163 | 24.6 | Plus |