Clone BO13012 Report

Search the DGRC for BO13012

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG7290-RA
Protein status:BO13012.pep:
Sequenced Size:1291

Clone Sequence Records

BO13012.5prime Sequence

846 bp (761 high quality bases) assembled on 2006-05-08

> BO13012.5prime
GAAGTTATCAGTCGACATGGGTGGACAAAAAGCAACCATCCTCGCTGCCG
TGGCGCTGGTGATCGCCTGTGCCGCTCCAGCAATAGCCGATGTGAATGTC
ACCGCCTTGTGCCTGCTGGTCAGCAATGGGAACTACGTGGCCAGCCAGTC
GGACTGCTCGACCTACTACCAGTGCCAGGGATCCTCGTTCACGGCCATGT
CCTGTCCCCAGGGCTACTACTTCGACAAGAATGCCCAGCAGTGCACGGGC
ACTGTGCCGAGCACCTGCACCAGCAACTCCGATCCCTGTCTGGGCAAGGC
GGTGGGATCCTTCGCGGCATCCAGTTCGTCCTGCGGCGGCTACTACTACT
GCGGAGCCTCCGGCGCTGTGAGGGGCAATTGTCCTGCCGGCGAGAACTTC
AATCCCACCACAATGGCCTGTGTGTACAAGAACAACTATCCATGCAGCGA
GTCCGCCGGTGATGGCTCCACTGTGTCGGTCGCCCTCAACCTATGCAATC
TTGTCAAGAATGGCTTTTACTTTGGAAGCCCTTCCGACTGCAGTGGCTGG
AACTTCTGCCAGGACAACGTTCTGCACTCGGGATCCTGCGAAGATGGTCT
AGTATTCAATGTGCAGGCCAGCAACTGCGGCTACAAGATGGCCTCATCCT
GCGCCCAGGTCACCAATGATCCATCCCTGACCGGAGTGTCTGCTCCGACC
ACATGCTCCTCGTCGGGAGCAACGATCGCAGCCACCGCGTGCAACCAGTA
CTACCTGTGCTCCGCCGGCAACTATCAGCTGATGACCTGCCCCTCGGGAT
ACTAACTATGATACCATCTCCGAAGCGTGTGTGAACAGGAATGGAA

BO13012.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG7290-PA 1260 CG7290-RA 1..788 17..804 3940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7290-RB 1667 CG7290-RB 46..873 17..846 4040 99.4 Plus
CG7290-RA 1358 CG7290-RA 46..873 17..846 4040 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20205108..20205927 840..20 3995 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 07:57:27 has no hits.

BO13012.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:26 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7290-PA 1..826 17..844 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:06 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7290-PA 1..826 17..844 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:47 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 46..873 17..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:52:55 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 46..873 17..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:52:55 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20205103..20205931 12..846 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:47 Download gff for BO13012.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20198203..20199031 12..846 98   Minus

BO13012.complete Sequence

1291 bp assembled on 2008-01-17

GenBank Submission: FJ632648

> BO13012.complete
GAAGTTATCAGTCGACATGGGTGGACAAAAAGCAACCATCCTCGCTGCCG
TGGCGCTGGTGATCGCCTGTGCCGCTCCAGCAATAGCCGATGTGAATGTC
ACCGCCTTGTGCCTGCTGGTCAGCAATGGGAACTACGTGGCCAGCCAGTC
GGACTGCTCGACCTACTACCAGTGCCAGGGATCCTCGTTCACGGCCATGT
CCTGTCCCCAGGGCTACTACTTCGACAAGAATGCCCAGCAGTGCACGGGC
ACTGTGCCGAGCACCTGCACCAGCAACTCCGATCCCTGTCTGGGCAAGGC
GGTGGGATCCTTCGCGGCATCCAGTTCGTCCTGCGGCGGCTACTACTACT
GCGGAGCCTCCGGCGCTGTGAGGGGCAATTGTCCTGCCGGCGAGAACTTC
AATCCCACCACAATGGCCTGTGTGTACAAGAACAACTATCCATGCAGCGA
GTCCGCCGGTGATGGCTCCACTGTGTCGGTCGCCCTCAACCTATGCAATC
TTGTCAAGAATGGCTTTTACTTTGGAAGCCCTTCCGACTGCAGTGGCTGG
AACTTCTGCCAGGACAACGTTCTGCACTCGGGATCCTGCGAAGATGGTCT
AGTATTCAATGTGCAGGCCAGCAACTGCGGCTACAAGATGGCCTCATCCT
GCGCCCAGGTCACCAATGATCCATCCCTGACCGGAGTGTCTGCTCCGACC
ACATGCTCCTCGTCGGGAGCAACGATCGCAGCCACCGCGTGCAACCAGTA
CTACCTGTGCTCCGCCGGCAACTATCAGCTGATGACCTGCCCCTCGGGAT
ACTACTATGATACCATCTCGAAGGCGTGTGTGACCAGGATGGAAGCGAGG
AACGACTGCGACAGATGTGTGGGCACCACTGCGACCTTTGTAAACGCCTA
CTCGGCAACCAATTGCTCTGATTACCTATACTGCGTGAACGGCGTTCAGA
AGGCCGTGGAGAGCTGCCCCACCAACTACTACTTCAACGAGAACCTCGGA
TCCTGCGTAAACGGGTTGGAGCCCAAGTTCCTCTGCTGCAATCCCACGCA
AAGCGATGGAACTTCGACGTCTTCCTCTGGTTCGACTTCCTCGGGCTCGA
CTTCCTCCGGATCGACTTCCTCTGGGTCAACTTCCTCCGGCTCGACTTCC
TCTGGCTCGACTTCCTCGGGCTCGACTTCCTCTGGCTCGACTTCCTCGGG
CTCGACTTCCTCCGGCTCGACTTCCTCTGGAACTTCATCCACAACCTCTA
CTGGAACAAGTTCAGACAAAAAAGCAAGCTTTCTAGACCAT

BO13012.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7290-RB 1260 CG7290-PB 1..1257 17..1273 6285 100 Plus
CG7290-RA 1260 CG7290-PA 1..1257 17..1273 6285 100 Plus
CG7290-RB 1260 CG7290-PB 1055..1181 1101..1227 485 92.1 Plus
CG7290-RB 1260 CG7290-PB 1085..1211 1071..1197 485 92.1 Plus
CG7290-RA 1260 CG7290-PA 1085..1211 1071..1197 485 92.1 Plus
CG7290-RA 1260 CG7290-PA 1055..1181 1101..1227 485 92.1 Plus
CG7290-RB 1260 CG7290-PB 1055..1169 1116..1230 410 90.4 Plus
CG7290-RB 1260 CG7290-PB 1100..1214 1071..1185 410 90.4 Plus
CG7290-RA 1260 CG7290-PA 1055..1169 1116..1230 410 90.4 Plus
CG7290-RA 1260 CG7290-PA 1100..1214 1071..1185 410 90.4 Plus
CG7290-RB 1260 CG7290-PB 1055..1151 1131..1227 350 90.7 Plus
CG7290-RB 1260 CG7290-PB 1115..1211 1071..1167 350 90.7 Plus
CG7290-RA 1260 CG7290-PA 1055..1151 1131..1227 350 90.7 Plus
CG7290-RA 1260 CG7290-PA 1115..1211 1071..1167 350 90.7 Plus
CG7290-RB 1260 CG7290-PB 1055..1139 1146..1230 335 92.9 Plus
CG7290-RB 1260 CG7290-PB 1130..1214 1071..1155 335 92.9 Plus
CG7290-RA 1260 CG7290-PA 1055..1139 1146..1230 335 92.9 Plus
CG7290-RA 1260 CG7290-PA 1130..1214 1071..1155 335 92.9 Plus
CG7290-RB 1260 CG7290-PB 1055..1109 1176..1230 245 96.4 Plus
CG7290-RB 1260 CG7290-PB 1160..1214 1071..1125 245 96.4 Plus
CG7290-RA 1260 CG7290-PA 1160..1214 1071..1125 245 96.4 Plus
CG7290-RA 1260 CG7290-PA 1055..1109 1176..1230 245 96.4 Plus
CG7290-RB 1260 CG7290-PB 1055..1121 1161..1227 215 88.1 Plus
CG7290-RB 1260 CG7290-PB 1145..1211 1071..1137 215 88.1 Plus
CG7290-RA 1260 CG7290-PA 1055..1121 1161..1227 215 88.1 Plus
CG7290-RA 1260 CG7290-PA 1145..1211 1071..1137 215 88.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7290-RB 1667 CG7290-RB 46..1302 17..1273 6285 100 Plus
CG7290-RA 1358 CG7290-RA 46..1302 17..1273 6285 100 Plus
CG7290-RB 1667 CG7290-RB 1100..1226 1101..1227 485 92.1 Plus
CG7290-RB 1667 CG7290-RB 1130..1256 1071..1197 485 92.1 Plus
CG7290-RA 1358 CG7290-RA 1100..1226 1101..1227 485 92.1 Plus
CG7290-RA 1358 CG7290-RA 1130..1256 1071..1197 485 92.1 Plus
CG7290-RB 1667 CG7290-RB 1100..1214 1116..1230 410 90.4 Plus
CG7290-RB 1667 CG7290-RB 1145..1259 1071..1185 410 90.4 Plus
CG7290-RA 1358 CG7290-RA 1100..1214 1116..1230 410 90.4 Plus
CG7290-RA 1358 CG7290-RA 1145..1259 1071..1185 410 90.4 Plus
CG7290-RB 1667 CG7290-RB 1100..1196 1131..1227 350 90.7 Plus
CG7290-RB 1667 CG7290-RB 1160..1256 1071..1167 350 90.7 Plus
CG7290-RA 1358 CG7290-RA 1100..1196 1131..1227 350 90.7 Plus
CG7290-RA 1358 CG7290-RA 1160..1256 1071..1167 350 90.7 Plus
CG7290-RB 1667 CG7290-RB 1175..1259 1071..1155 335 92.9 Plus
CG7290-RB 1667 CG7290-RB 1100..1184 1146..1230 335 92.9 Plus
CG7290-RA 1358 CG7290-RA 1100..1184 1146..1230 335 92.9 Plus
CG7290-RA 1358 CG7290-RA 1175..1259 1071..1155 335 92.9 Plus
CG7290-RB 1667 CG7290-RB 1100..1154 1176..1230 245 96.4 Plus
CG7290-RB 1667 CG7290-RB 1205..1259 1071..1125 245 96.4 Plus
CG7290-RA 1358 CG7290-RA 1100..1154 1176..1230 245 96.4 Plus
CG7290-RA 1358 CG7290-RA 1205..1259 1071..1125 245 96.4 Plus
CG7290-RB 1667 CG7290-RB 1100..1166 1161..1227 215 88.1 Plus
CG7290-RB 1667 CG7290-RB 1190..1256 1071..1137 215 88.1 Plus
CG7290-RA 1358 CG7290-RA 1100..1166 1161..1227 215 88.1 Plus
CG7290-RA 1358 CG7290-RA 1190..1256 1071..1137 215 88.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20204674..20205927 1273..20 6270 100 Minus
3L 28110227 3L 20204720..20204846 1197..1071 485 92.1 Minus
3L 28110227 3L 20204750..20204876 1227..1101 485 92.1 Minus
3L 28110227 3L 20204717..20204831 1185..1071 410 90.4 Minus
3L 28110227 3L 20204762..20204876 1230..1116 410 90.4 Minus
3L 28110227 3L 20204720..20204816 1167..1071 350 90.7 Minus
3L 28110227 3L 20204780..20204876 1227..1131 350 90.7 Minus
3L 28110227 3L 20204717..20204801 1155..1071 335 92.9 Minus
3L 28110227 3L 20204792..20204876 1230..1146 335 92.9 Minus
3L 28110227 3L 20204717..20204771 1125..1071 245 96.4 Minus
3L 28110227 3L 20204822..20204876 1230..1176 245 96.4 Minus
3L 28110227 3L 20204720..20204786 1137..1071 215 88.1 Minus
3L 28110227 3L 20204810..20204876 1227..1161 215 88.1 Minus
Blast to na_te.dros performed on 2014-11-27 01:02:15 has no hits.

BO13012.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:20 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 1..1260 17..1277 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:36 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 43..1293 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:55 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 46..1296 17..1267 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:20 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 43..1305 17..1282 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:53 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
CG7290-RA 46..1296 17..1267 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:53 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20204680..20205928 17..1267 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:55 Download gff for BO13012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20197780..20199028 17..1267 99   Minus

BO13012.pep Sequence

Translation from 16 to 1291

> BO13012.pep
MGGQKATILAAVALVIACAAPAIADVNVTALCLLVSNGNYVASQSDCSTY
YQCQGSSFTAMSCPQGYYFDKNAQQCTGTVPSTCTSNSDPCLGKAVGSFA
ASSSSCGGYYYCGASGAVRGNCPAGENFNPTTMACVYKNNYPCSESAGDG
STVSVALNLCNLVKNGFYFGSPSDCSGWNFCQDNVLHSGSCEDGLVFNVQ
ASNCGYKMASSCAQVTNDPSLTGVSAPTTCSSSGATIAATACNQYYLCSA
GNYQLMTCPSGYYYDTISKACVTRMEARNDCDRCVGTTATFVNAYSATNC
SDYLYCVNGVQKAVESCPTNYYFNENLGSCVNGLEPKFLCCNPTQSDGTS
TSSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSGSTSSG
STSSGTSSTTSTGTSSDKKASFLDH

BO13012.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7290-PB 419 CG7290-PB 1..419 1..419 2239 100 Plus
CG7290-PA 419 CG7290-PA 1..419 1..419 2239 100 Plus
CG7298-PA 369 CG7298-PA 8..368 6..359 526 33.8 Plus
CG6996-PC 364 CG6996-PC 24..358 27..367 400 29.3 Plus
CG6996-PB 364 CG6996-PB 24..358 27..367 400 29.3 Plus
CG6996-PC 364 CG6996-PC 16..288 152..424 180 23.2 Plus
CG6996-PC 364 CG6996-PC 135..357 21..240 163 24.6 Plus