Clone Sequence Records
BO13015.3prime Sequence
653 bp (551 high quality bases) assembled on 2006-05-08
> BO13015.3prime
ATGGTCTAGAAAGCTTGCCTTGGCGGTTGCATAGGCATCGTGACTCTTGT
GGAACACATGGCGCAGCACGTCCCGCGTGGACCGCCTAATGCTGTTCCGC
AGTGAGTGCTTCTTCTCGTTGGTCAGCTGCTCGATGGTCATGTACTCGGT
TTGGGCAACGCTCGAGCGGAGCTTCATGGTCCGTTCGCTGGTGTCGATAA
TGGAGACGTCGGCGAGAACGGGCTCCATTTGCTCCTCCAACTCGGCCGCC
TTTTGTGGCCTCCTGCGCAGGCTGTGCCGAATGCTATTGAGTATGTTGTG
CTGTCCATGGCCCTGTCCATGTCCATGTTCATCCTTGTCCTCGGACTTTA
CCTCGGATGGCGTGGTGTGCGACGTGGGATGCATCAGTCTTCGAATGGAC
TTTCTTATCATGCCTTTCATTCCGATACTGGGCTTAACTTCTGCCGATTT
GGCGGACTTGCTTGATCCGATGGACTGCAGCGACTCCTTGCTGGCCGCCT
TGGAGGGCAAAGCGGCGGGTCTGTANGCGCGAACGAAGCGCGCGGGTGCC
TTGAAGTCTAAATCATCGGGCTCGTCGTCGGATTCGGATTCGGAGGCATA
GGCCACATCGCCGTCGGTTGGCTCCTTTTTCCGTTCCTCTTCTAGCTGCC
TTT
BO13015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3346-PA | 2013 | pon-RA | 1376..2010 | 653..19 | 3081 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 1511..2145 | 653..19 | 3119 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4638022..4638656 | 653..19 | 3119 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-03 07:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gtwin | 7411 | gtwin GTWIN 7411bp | 3384..3433 | 137..88 | 106 | 68 | Minus |
BO13015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:31 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-PA | 1376..2013 | 16..653 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:12 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3346-PA | 1376..2013 | 16..653 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:01 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 1511..2150 | 13..653 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:23 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 1511..2150 | 13..653 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:23 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4638022..4638661 | 13..653 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:01 Download gff for
BO13015.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4532055..4532694 | 13..653 | 98 | | Minus |
BO13015.5prime Sequence
790 bp (681 high quality bases) assembled on 2006-05-08
> BO13015.5prime
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTT
BO13015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3346-PA | 2013 | pon-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG18361-PB | 1806 | dsh-RB | 289..329 | 311..351 | 155 | 95.1 | Plus |
CG9811-PA | 1614 | Rgk1-RA | 235..272 | 314..351 | 140 | 94.7 | Plus |
CG33261-PI | 1704 | Trl-RI | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PI | 1704 | Trl-RI | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG33261-PA | 1749 | Trl-RA | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PA | 1749 | Trl-RA | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG33261-PF | 1749 | Trl-RF | 1395..1431 | 319..355 | 135 | 94.5 | Plus |
CG33261-PF | 1749 | Trl-RF | 1276..1317 | 314..355 | 135 | 92.8 | Plus |
CG12690-PA | 3807 | CHES-1-like-RA | 859..900 | 314..355 | 135 | 92.8 | Plus |
CG32133-PA | 6885 | CG32133-RA | 657..708 | 304..355 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:20:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 136..909 | 17..790 | 3870 | 100 | Plus |
Cht6-RK | 11742 | CG43374-RK | 135..180 | 309..354 | 185 | 93.5 | Plus |
Cht6-RJ | 14423 | CG43374-RJ | 79..124 | 309..354 | 185 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4636453..4636919 | 17..483 | 2335 | 100 | Plus |
X | 23542271 | X | 4637110..4637420 | 480..790 | 1555 | 100 | Plus |
X | 23542271 | X | 10017616..10017661 | 309..354 | 185 | 93.5 | Plus |
3L | 28110227 | 3L | 14027758..14027809 | 355..304 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 14751472..14751523 | 360..309 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2015-02-12 19:20:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2436 | 288..359 | 209 | 78.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2409 | 305..359 | 185 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2835 | 310..362 | 184 | 83 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2355 | 306..359 | 162 | 77.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 311..355 | 144 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2476 | 312..354 | 143 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2997 | 311..362 | 133 | 74.5 | Plus |
BS | 5142 | BS BS 5142bp | 2018..2110 | 305..405 | 109 | 61.8 | Plus |
BO13015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:31 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:14 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3346-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:49 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..909 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:45:49 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..909 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:45:49 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4636453..4636917 | 17..481 | 100 | -> | Plus |
X | 4637112..4637420 | 482..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:49 Download gff for
BO13015.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4530486..4530950 | 17..481 | 100 | -> | Plus |
arm_X | 4531145..4531453 | 482..790 | 100 | | Plus |
BO13015.complete Sequence
2044 bp assembled on 2008-01-17
GenBank Submission: FJ632649
> BO13015.complete
GAAGTTATCAGTCGACATGCTGGAGACGAAGAGCATAGCTGCATTGGCTT
TCACGGAGACGCCGCGCAAACGCAAAAGGGAGACGCTCTATAAAAATGCT
GCCCCGCCCCCGAATCCGCAGCAACAACCCCCAGAAAAGGACGCACAGGA
TGCAGCTGTCGCGTCGACAGAATCCTGCTTCACCAACGCCGCCTTCAGTT
CCACGCCCAAGAAGCTAATGGTGGCTCGTCGTCGTTTGGCCAAGGAGAAT
AGCCAACCCAATCCGTTTCCCGGCTTGGAGGTCAAGTCCATAGCTGATCT
GGCCCAGAAGCAGCAGCACCAGCAGCATCATCAGCAGCAGCAACAACAAC
AACAAAAGCTACCCACGAATCCTTTTGAGGTCCTGCGCCAGCCGCCCAAG
AAGAAGAAGCGCGAGCATGCCTGCTTCGAGAATCCTGGCCTGAATTTGGA
GCTGCCCGAGAAGCAGTTCAATCCATATGAGGTCGTCCGCTCGGCAACCA
CGCCCGCCAAGGGCTTCGTGAATCCTGCCCTGAATTTGCGCGGCAGTGAT
GCGCCGGCCTCGCTCAATCCCTTCGAGATCCATCGGCCCAGCGAGGCGTC
CGAGGCAGCCTGCAATCCCTCGGGTGTGGCCAATCCGGCACTGGCCGATA
GGGATTCGGAGGAGCAGCTGCCCACCAGCCTGAAGATCGGCTTGCCATTC
ACGCCAACGCTGGGCTGTCGCATCGATTTTCACGGCATGTCCCTTACGCA
GCTAACGCCTAGCAAGCTGCTGGCCGAGAAGCTGGTCTTTTCGCCCGTTC
CGGCGCCCAAACGATCGCTGGGCGCCATCAGCGAGGAGTCGTCTATGGAC
ATTGGCAAGGAGCTGGATCGCTATCAACTGGAATTGGAGAACAGCATCAA
CGAGGCGAAGCTACGGAAGAATGGCGTGCTGGTGGATAGAGAGTTGCCCA
GGAATAGCTTGGAGGTGGAACTGCCCAAGAACACCAAGGTCTCCTTGGTC
ATGGAGACCAATACGCAGGAGCTGATGATGCAGGAAGTGGTGACGGTGGA
CACTCAAGTGGAGAGGCGTCTGGTTTGCACCAGACGACGCACACTAACCG
AGATTAGCGAGGCTTCCGAGGTGGAAGAGGACACGGAGAAGCTGCTCGAG
CAGGACCGCGAAGCAGAGGTGATTCTCGAGCAGGAGAAGATTCTAGAGCA
GGAGATGGTCTCAGAGCGGGAACGACATTTAACGAGGGAGAAGCAATTGA
AGCAGGAGAAACTCCTAGAGAGGGAAAAACATTTGGAGCGAGAGAAGCTG
CAGGAGAAGCTGCACGAGCAGCTCAGGGAAAAGCTCCAGGAGAGGGCCAA
GCACCTGGAGAAGGAGAAGCTGGAGGAGGAGGAGCTCCTGGAAAGGCAGC
TAGAAGAGGAACGGGAAAAGGAGCCAACCGACGGCGATGTGGCCTATGCC
TCCGAATCCGAATCCGACGACGAGCCCGATGATCTAGACTTCAAGGCACC
CGCGCGCTTCGTTCGCGCCTACAGACCCGCCGCTCTGCCCTCCAAGGCGG
CCAGCAAGGAGTCGCTGCAGTCCATCGGATCAAGCAAGTCCGCCAAATCG
GCAGAAGTTAAGCCCAGTATCGGAATGAAAGGCATGATAAGAAAGTCCAT
TCGAAGACTGATGCATCCCACGTCGCACACCACGCCATCCGAGGTAAAGT
CCGAGGACAAGGATGAACATGGACATGGACAGGGCCATGGACAGCACAAC
ATACTCAATAGCATTCGGCACAGCCTGCGCAGGAGGCCACAAAAGGCGGC
CGAGTTGGAGGAGCAAATGGAGCCCGTTCTCGCCGACGTCTCCATTATCG
ACACCAGCGAACGGACCATGAAGCTCCGCTCGAGCGTTGCCCAAACCGAG
TACATGACCATCGAGCAGCTGACCAACGAGAAGAAGCACTCACTGCGGAA
CAGCATTAGGCGGTCCACGCGGGACGTGCTGCGCCATGTGTTCCACAAGA
GTCACGATGCCTATGCAACCGCCAAGGCAAGCTTTCTAGACCAT
BO13015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2013 | CG3346-PA | 1..2010 | 17..2026 | 10035 | 100 | Plus |
Trl-RK | 1872 | CG33261-PK | 1508..1559 | 309..360 | 185 | 90.4 | Plus |
Trl-RJ | 1827 | CG33261-PJ | 1508..1559 | 309..360 | 185 | 90.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-RA | 2601 | CG3346-RA | 136..2145 | 17..2026 | 10035 | 100 | Plus |
Cht6-RK | 11742 | CG43374-RK | 135..180 | 309..354 | 185 | 93.5 | Plus |
Cht6-RJ | 14423 | CG43374-RJ | 79..124 | 309..354 | 185 | 93.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4637110..4638656 | 480..2026 | 7720 | 99.9 | Plus |
X | 23542271 | X | 4636453..4636919 | 17..483 | 2335 | 100 | Plus |
X | 23542271 | X | 10017616..10017661 | 309..354 | 185 | 93.5 | Plus |
3L | 28110227 | 3L | 14027758..14027809 | 355..304 | 185 | 90.4 | Minus |
3L | 28110227 | 3L | 14751472..14751523 | 360..309 | 185 | 90.4 | Minus |
Blast to na_te.dros performed 2014-11-27 06:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2436 | 288..359 | 209 | 78.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2409 | 305..359 | 185 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2835 | 310..362 | 184 | 83 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2355 | 306..359 | 162 | 77.8 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3323 | 311..355 | 144 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2476 | 312..354 | 143 | 81.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2997 | 311..362 | 133 | 74.5 | Plus |
BO13015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:21 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 1..2013 | 17..2029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:45 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 124..2133 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:31 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..2145 | 17..2028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:21 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 124..2138 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:58 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pon-RA | 136..2145 | 17..2028 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:58 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4636453..4636917 | 17..481 | 100 | -> | Plus |
X | 4637112..4638656 | 482..2028 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:31 Download gff for
BO13015.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4530486..4530950 | 17..481 | 100 | -> | Plus |
arm_X | 4531145..4532689 | 482..2028 | 99 | | Plus |
BO13015.pep Sequence
Translation from 16 to 2044
> BO13015.pep
MLETKSIAALAFTETPRKRKRETLYKNAAPPPNPQQQPPEKDAQDAAVAS
TESCFTNAAFSSTPKKLMVARRRLAKENSQPNPFPGLEVKSIADLAQKQQ
HQQHHQQQQQQQQKLPTNPFEVLRQPPKKKKREHACFENPGLNLELPEKQ
FNPYEVVRSATTPAKGFVNPALNLRGSDAPASLNPFEIHRPSEASEAACN
PSGVANPALADRDSEEQLPTSLKIGLPFTPTLGCRIDFHGMSLTQLTPSK
LLAEKLVFSPVPAPKRSLGAISEESSMDIGKELDRYQLELENSINEAKLR
KNGVLVDRELPRNSLEVELPKNTKVSLVMETNTQELMMQEVVTVDTQVER
RLVCTRRRTLTEISEASEVEEDTEKLLEQDREAEVILEQEKILEQEMVSE
RERHLTREKQLKQEKLLEREKHLEREKLQEKLHEQLREKLQERAKHLEKE
KLEEEELLERQLEEEREKEPTDGDVAYASESESDDEPDDLDFKAPARFVR
AYRPAALPSKAASKESLQSIGSSKSAKSAEVKPSIGMKGMIRKSIRRLMH
PTSHTTPSEVKSEDKDEHGHGQGHGQHNILNSIRHSLRRRPQKAAELEEQ
MEPVLADVSIIDTSERTMKLRSSVAQTEYMTIEQLTNEKKHSLRNSIRRS
TRDVLRHVFHKSHDAYATAKASFLDH
BO13015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pon-PA | 670 | CG3346-PA | 1..670 | 1..670 | 3392 | 100 | Plus |
Trf2-PI | 1714 | CG18009-PI | 770..958 | 255..466 | 180 | 30.3 | Plus |
Trf2-PE | 1715 | CG18009-PE | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PF | 1715 | CG18009-PF | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PG | 1715 | CG18009-PG | 771..959 | 255..466 | 180 | 30.3 | Plus |
Trf2-PI | 1714 | CG18009-PI | 822..1045 | 281..503 | 165 | 29.5 | Plus |
Trf2-PE | 1715 | CG18009-PE | 823..1046 | 281..503 | 165 | 29.5 | Plus |
Trf2-PF | 1715 | CG18009-PF | 823..1046 | 281..503 | 165 | 29.5 | Plus |