Clone Sequence Records
BO13018.3prime Sequence
742 bp (582 high quality bases) assembled on 2006-05-08
> BO13018.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCTCCAGCATGGCAATGCAATCGCAAA
CTTTGCTCAACAGTGTGCCATTGTTAACGATCGCCTGGTTCTTTTGCAAC
TCAAAGAGACTGTGCACATCACGCTGCTCGAAGGCGGAATCTATGGCTTC
GTTAAATAGGTTTGCTCGCATATACCAGACGACCCGGCGATTGTCCCGAC
ACCTTGGTATATACTTTCGGGCCTCCATTACATTGTCCTGTTTTAAGCAG
ACCTCAACAAAAGGATCGTAGCCAATGGGGCTCTTTTTACTTTTAGCTAA
CTTTTCCAACTCCTCCCACTTGTGTTGACTAGAAAGTGTGAGGATTCGTA
GCCACCAGAACCGACGATCGGGCACTTTAAATTCGCTTCTGATTCGCTCT
GCCTCTTTCAATTCGCCGATCAGCAGTAATTCTTGAATGGTCTCATGTAT
TGACAAGCCATTTAAGCTGACATTATACTTGGTGCTTAGAGTCTTTTGCA
GCTTAATCAATCGGCTGGTATCCGCACAAAGCTCCGCTTCCAATGTGCAA
CGGCCCTGGGCATAGGCGTTTCCAATCATCGAAAGATTCGACTCCAATCC
TTCAGTTTCAATGGCATTCTGGAAGTGATACTCAGCGATGGCCTTTTGGT
CGTCTTCGGTGTTGTAAATCCCCATAGAGTCCAGCTCTGTTGGACTCCCG
CATTATCTTTTTGTATATGTTTAGAGCCAGTGGATGGTCCCT
BO13018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8454-PA | 2502 | Vps16A-RA | 1846..2499 | 672..19 | 3270 | 100 | Minus |
CG8454-PA | 2502 | Vps16A-RA | 1777..1848 | 742..671 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 1880..2602 | 742..19 | 3595 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9269303..9269883 | 742..161 | 2860 | 99.8 | Minus |
3R | 32079331 | 3R | 9269944..9270085 | 160..19 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:39:06 has no hits.
BO13018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:36 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1777..2502 | 18..742 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:19 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1777..2502 | 18..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:39 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 1880..2602 | 19..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:19 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 1880..2602 | 19..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:19 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9269303..9269883 | 161..742 | 99 | -> | Minus |
3R | 9269944..9270085 | 19..160 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:39 Download gff for
BO13018.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5095025..5095605 | 161..742 | 99 | -> | Minus |
arm_3R | 5095666..5095807 | 19..160 | 100 | | Minus |
BO13018.5prime Sequence
825 bp (715 high quality bases) assembled on 2006-05-08
> BO13018.5prime
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGAACAACCATCAGCACTTGGCACTGTACACCAACACCGGTCTTCT
TTGGCTGGGCAGCGTAGATATGCGGCAAAAGTATTGTGAATTCAACACCG
GACGTAAAGATATGCCCCTCCAAAT
BO13018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8454-PA | 2502 | Vps16A-RA | 1..809 | 17..825 | 3995 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 95..912 | 8..825 | 4030 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9267810..9268101 | 534..825 | 1430 | 99.3 | Plus |
3R | 32079331 | 3R | 9267488..9267759 | 262..533 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9267243..9267436 | 69..262 | 970 | 100 | Plus |
3R | 32079331 | 3R | 9267113..9267177 | 8..72 | 295 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:07:00 has no hits.
BO13018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:37 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:20 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8454-PA | 1..809 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:49 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 89..912 | 2..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:20:14 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 89..912 | 2..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:20:14 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9267107..9267177 | 2..72 | 93 | -> | Plus |
3R | 9267247..9267436 | 73..262 | 100 | -> | Plus |
3R | 9267489..9267759 | 263..533 | 100 | -> | Plus |
3R | 9267810..9268101 | 534..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:49 Download gff for
BO13018.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5092829..5092899 | 2..72 | 93 | -> | Plus |
arm_3R | 5092969..5093158 | 73..262 | 100 | -> | Plus |
arm_3R | 5093211..5093481 | 263..533 | 100 | -> | Plus |
arm_3R | 5093532..5093823 | 534..825 | 99 | | Plus |
BO13018.complete Sequence
2533 bp assembled on 2008-01-17
GenBank Submission: FJ632650
> BO13018.complete
GAAGTTATCAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCA
AGGTGCGACCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGG
CCTCTGGACCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGG
AGGACCACTGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGG
GTAACGCTAGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATG
GGTCACATATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGA
CATGGAGGAGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACG
ACATGTTTGGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGT
GTCACAAAGATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGG
AGTGGCTGTAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCA
GCAAGACTGAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGT
TCCTGCTGGGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGG
AAGGGATCGAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTA
TTACCGCCAATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCT
GTGTCGTACAACCATCAGCACTTGGCACTGTACACCAACACCGGTCTTCT
TTGGCTGGGCAGCGTAGATATGCGGCAAAAGTATTGTGAATTCGACACCG
GACGTAAAGATATGCCCCTCCAAATGGAGTGGATCATGAACTCTGACAAC
AGCGAGGCGGATGCGGTGGTCATTTCATATCCATCGTACCTCTTAATTGT
AAATCGTAACGCTGATCGCAGTGACTTTCCCTACGATCCGGTGATGTTTC
TTGTGGCTGAAATGGATGGCGTTCGCATTATTACTCAGAGTTCGCATGAA
ATAATACAGCGCCTGCCAAAATGCGTTGAGAACATATTTGCAGTGAATAG
CCAGGAACCGGCTAGCTATCTCTTTGAGGCACAGAAAAAGTTTGAGGAGA
AGTCCTACAAGTCGGATGAGTATCTCAGCATGTGTCGGGAAAAGATCGAT
CTGGCAGTGTCCGAATGTATTGAGGCGGCTTCATATGAGTTTTGTCCGGA
AACTCAAAAGAGCTTGCTTAGGACGGCCTATTTTGGAAAAGGCTTTATTC
GTAACCACAATCCAGATGAATATATGCGTATTATGCGAATACTGAGGGTT
CTTAACACCTTGCGGCATGAGCGAATTGCCATGCCCATCACCTTCAAACA
ATTCTCACATCTTAATACCGAGGTCATACTCAGCCGTTTGGTATTCCGCA
AACACTATGCCATTGCGATACAAGTGGCCAAGCATTTAAATCTGCCCGAA
TCGTGGATCTTGGAACACTGGGCTTACCATAAAGTGATGAATGATCCCAA
TGATACTGAAGTGGCGCGTAAGATAACTGAAAAGTTCAAGAATCCGTCGG
TCGAGGGAATTTCTTTCTGCAATATTGCGTCAAAGGCGCATCAAGCTGGA
CGAGATGACCTGGCCATTAAGCTGCTAGAGCTCGAGTCTCGTGCTTCGCT
TCACGTACCACTACTTCTGAAGATGCGCAAGTTTGATCGGGCGGTGGGCA
GTGCCACACAGTCCGGCGATACAGAGTTGATCACCCAAGTTCTCTTGGAG
ATGAAAATGCACATGATGCTGTCCAATTTGCACATGACTATTAGGGACCA
TCCACTGGCTCTAAACATATACAAAAAGATAATGCGGGAGTCCAACAGAG
CTGGACTCTATGGGATTTACAACACCGAAGACGACCAAAAGGCCATCGCT
GAGTATCACTTCCAGAATGCCATTGAAACTGAAGGATTGGAGTCGAATCT
TTCGATGATTGGAAACGCCTATGCCCAGGGCCGTTGCACATTGGAAGCGG
AGCTTTGTGCGGATACCAGCCGATTGATTAAGCTGCAAAAGACTCTAAGC
ACCAAGTATAATGTCAGCTTAAATGGCTTGTCAATACATGAGACCATTCA
AGAATTACTGCTGATCGGCGAATTGAAAGAGGCAGAGCGAATCAGAAGCG
AATTTAAAGTGCCCGATCGTCGGTTCTGGTGGCTACGAATCCTCACACTT
TCTAGTCAACACAAGTGGGAGGAGTTGGAAAAGTTAGCTAAAAGTAAAAA
GAGCCCCATTGGCTACGATCCTTTTGTTGAGGTCTGCTTAAAACAGGACA
ATGTAATGGAGGCCCGAAAGTATATACCAAGGTGTCGGGACAATCGCCGG
GTCGTCTGGTATATGCGAGCAAACCTATTTAACGAAGCCATAGATTCCGC
CTTCGAGCAGCGTGATGTGCACAGTCTCTTTGAGTTGCAAAAGAACCAGG
CGATCGTTAACAATGGCACACTGTTGAGCAAAGTTTGCGATTGCATTGCC
ATGCTGGAGGGAAAGGCAAGCTTTCTAGACCAT
BO13018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2502 | CG8454-PA | 1..2499 | 17..2515 | 12495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-RA | 2741 | CG8454-RA | 95..2602 | 8..2515 | 12510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9267810..9268498 | 534..1222 | 3445 | 100 | Plus |
3R | 32079331 | 3R | 9269294..9269883 | 1784..2373 | 2950 | 100 | Plus |
3R | 32079331 | 3R | 9268942..9269225 | 1500..1783 | 1420 | 100 | Plus |
3R | 32079331 | 3R | 9267488..9267759 | 262..533 | 1360 | 100 | Plus |
3R | 32079331 | 3R | 9267243..9267436 | 69..262 | 970 | 100 | Plus |
3R | 32079331 | 3R | 9268737..9268889 | 1351..1503 | 750 | 99.3 | Plus |
3R | 32079331 | 3R | 9269944..9270085 | 2374..2515 | 710 | 100 | Plus |
3R | 32079331 | 3R | 9268556..9268684 | 1222..1350 | 645 | 100 | Plus |
3R | 32079331 | 3R | 9267113..9267177 | 8..72 | 295 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:21:47 has no hits.
BO13018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:22 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 1..2502 | 17..2516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:33 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 91..2589 | 17..2517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:34 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 104..2602 | 17..2517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:22 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 76..2589 | 2..2515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:01 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps16A-RA | 104..2602 | 17..2517 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:01 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9267122..9267177 | 17..72 | 100 | -> | Plus |
3R | 9267247..9267436 | 73..262 | 100 | -> | Plus |
3R | 9267489..9267759 | 263..533 | 100 | -> | Plus |
3R | 9267810..9268498 | 534..1222 | 100 | -> | Plus |
3R | 9268557..9268684 | 1223..1350 | 100 | -> | Plus |
3R | 9268737..9268885 | 1351..1499 | 100 | -> | Plus |
3R | 9268942..9269225 | 1500..1783 | 100 | -> | Plus |
3R | 9269294..9269883 | 1784..2373 | 100 | -> | Plus |
3R | 9269944..9270085 | 2374..2517 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:34 Download gff for
BO13018.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5094459..5094607 | 1351..1499 | 100 | -> | Plus |
arm_3R | 5092844..5092899 | 17..72 | 100 | -> | Plus |
arm_3R | 5092969..5093158 | 73..262 | 100 | -> | Plus |
arm_3R | 5093211..5093481 | 263..533 | 100 | -> | Plus |
arm_3R | 5093532..5094220 | 534..1222 | 100 | -> | Plus |
arm_3R | 5094279..5094406 | 1223..1350 | 100 | -> | Plus |
arm_3R | 5094664..5094947 | 1500..1783 | 100 | -> | Plus |
arm_3R | 5095016..5095605 | 1784..2373 | 100 | -> | Plus |
arm_3R | 5095666..5095807 | 2374..2517 | 98 | | Plus |
BO13018.pep Sequence
Translation from 16 to 2533
> BO13018.pep
MPIMYNTGEWFKVRPDYYRKVELATPDWPLDLDLEYMWVEVAPYGGPLAV
TRDPTKLVPVKGNARPMIRIFDTTGREMGHILWNHGKLIAMGWSDMEELI
CIQENATVFVYDMFGREKESYSIGDEASVTKIVEGKVFQSSAGTGVAVMT
TSGRVFLKQNSSKTERKLPDIPNSSMNCSCWEIVTEGRNSYCLLGRDREV
IKLFPGETVGTITANLFEKPHERIIKISVSYNHQHLALYTNTGLLWLGSV
DMRQKYCEFDTGRKDMPLQMEWIMNSDNSEADAVVISYPSYLLIVNRNAD
RSDFPYDPVMFLVAEMDGVRIITQSSHEIIQRLPKCVENIFAVNSQEPAS
YLFEAQKKFEEKSYKSDEYLSMCREKIDLAVSECIEAASYEFCPETQKSL
LRTAYFGKGFIRNHNPDEYMRIMRILRVLNTLRHERIAMPITFKQFSHLN
TEVILSRLVFRKHYAIAIQVAKHLNLPESWILEHWAYHKVMNDPNDTEVA
RKITEKFKNPSVEGISFCNIASKAHQAGRDDLAIKLLELESRASLHVPLL
LKMRKFDRAVGSATQSGDTELITQVLLEMKMHMMLSNLHMTIRDHPLALN
IYKKIMRESNRAGLYGIYNTEDDQKAIAEYHFQNAIETEGLESNLSMIGN
AYAQGRCTLEAELCADTSRLIKLQKTLSTKYNVSLNGLSIHETIQELLLI
GELKEAERIRSEFKVPDRRFWWLRILTLSSQHKWEELEKLAKSKKSPIGY
DPFVEVCLKQDNVMEARKYIPRCRDNRRVVWYMRANLFNEAIDSAFEQRD
VHSLFELQKNQAIVNNGTLLSKVCDCIAMLEGKASFLDH
BO13018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps16A-PA | 833 | CG8454-PA | 1..833 | 1..833 | 4357 | 100 | Plus |