Clone BO13022 Report

Search the DGRC for BO13022

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7427-RA
Protein status:BO13022.pep: validated full length
Sequenced Size:898

Clone Sequence Records

BO13022.3prime Sequence

626 bp (606 high quality bases) assembled on 2006-05-08

> BO13022.3prime
ATGGTCTAGAAAGCTTGCGCCATAGTTCATGTTTGTACTGTGCGAGGTCT
GGTAGGCGCTGGATATGTTCTTTTGGGAGCTGGAGCTAGCACTGGACTGC
TGCTGGTAGCCGGATGCCGGCGAGGAGTCCTCCTTGAGATGATCGTTCTC
CTGGCACCACTCCACAAAGTCGTCTATTAGAACCGGCCAGGCGCCCTCCG
AATCGTAGTTGCTCATCCGGTCGTCGATGTTGGTGGCAAAGTCGAGCAGC
AGGTTCCACGTATCTCGCGAGATGGCCCGCTTGTGTTTCTCCTCGAGGAA
CTGGCACCAGATGTCCAAGAACTTGAAGCGCCCACTAAGAACGATGCACC
AGTAGGCGATTGCCATTTCCAGGTCAATGCCCTTTTGCCCCGGATCCTTG
GCGTAGTTGAAGGTAAAGTGGTAAAAGTCCTTGAACTTGCCGGCGTCGTT
CAGCTCCTGCTCAAGGATGGGCAGCTTGGTCTTTAGCTTGTCGATGCTAT
CGATGCCCAGGTCGCACATGCCATTGATAAACTCATCACGCGAGAACTCG
CACTGCACCTCGGCGTGGAATTTCCACGCTATGATCAGCACCAGTTTTGA
GTCTGGCTTCAGGTCCAAGTCCCCCA

BO13022.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PA 867 CG7427-RA 261..864 622..19 3020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RD 1472 CG7427-RD 715..1322 626..19 3025 99.8 Minus
CG7427-RC 1513 CG7427-RC 756..1363 626..19 3025 99.8 Minus
CG7427-RB 1487 CG7427-RB 730..1337 626..19 3025 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564515..15565122 626..19 3025 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 16:39:49 has no hits.

BO13022.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:43 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-PA 258..867 15..625 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:29 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-PA 258..867 15..625 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:50 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RB 731..1340 15..625 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:16 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RB 731..1340 15..625 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:16 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15564516..15565125 15..625 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:50 Download gff for BO13022.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15557616..15558225 15..625 99   Minus

BO13022.5prime Sequence

746 bp (668 high quality bases) assembled on 2006-05-08

> BO13022.5prime
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGGGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACGCCGGCAAGTTCAAGGACTTTTACCACTTTACCTTCAACTACGCCA
AGGATCCGGGGCAAAAGGGCATTGACCTGGAAATGGCAATCGCCTACTGG
TGCATCGTTCTTAGTGGGCGCTTCAAGTTCTTGGACATCTGGTGCCAGTT
CCTCGAGGAGAAACACAAGCGGGCCATCTCGCGAGATACGTGGAACCTGC
TGCTCGACTTTGCCACCAACATCGACGACCGGATGAGCAACTACAATTCG
GAGGGCGCCTGGCCGGTTCAATAGACGACTTTGTGGAGTGGTGCCA

BO13022.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PA 867 CG7427-RA 1..703 17..719 3490 99.8 Plus
CG7427-PA 867 CG7427-RA 705..731 720..746 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 1226 CG7427-RE 213..943 17..746 3615 99.7 Plus
CG7427-RA 1601 CG7427-RA 301..1031 17..746 3615 99.7 Plus
CG7427-RD 1472 CG7427-RD 461..1189 19..746 3605 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564261..15564989 19..746 3580 99.7 Plus
Blast to na_te.dros performed on 2015-02-11 23:18:26 has no hits.

BO13022.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:44 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-PA 1..730 17..745 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:30 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-PA 1..730 17..745 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:17 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 294..1030 9..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:30 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 294..1030 9..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:30 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15564262..15564988 20..745 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:17 Download gff for BO13022.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15557362..15558088 20..745 99   Plus

BO13022.complete Sequence

898 bp assembled on 2006-10-11

GenBank Submission: FJ632651

> BO13022.complete
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGGGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACGCCGGCAAGTTCAAGGACTTTTACCACTTTACCTTCAACTACGCCA
AGGATCCGGGGCAAAAGGGCATTGACCTGGAAATGGCAATCGCCTACTGG
TGCATCGTTCTTAGTGGGCGCTTCAAGTTCTTGGACATCTGGTGCCAGTT
CCTCGAGGAGAAACACAAGCGGGCCATCTCGCGAGATACGTGGAACCTGC
TGCTCGACTTTGCCACCAACATCGACGACCGGATGAGCAACTACGATTCG
GAGGGCGCCTGGCCGGTTCTAATAGACGACTTTGTGGAGTGGTGCCAGGA
GAACGATCATCTCAAGGAGGACTCCTCGCCGGCATCCGGCTACCAGCAGC
AGTCCAGTGCTAGCTCCAGCTCCCAAAAGAACATATCCAGCGCCTACCAG
ACCTCGCACAGTACAAACATGAACTATGGCGCAAGCTTTCTAGACCAT

BO13022.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 867 CG7427-PE 1..864 17..880 4320 100 Plus
CG7427-RA 867 CG7427-PA 1..864 17..880 4320 100 Plus
CG7427-RD 876 CG7427-PD 12..873 19..880 4310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-RE 1226 CG7427-RE 213..1076 17..880 4320 100 Plus
CG7427-RA 1601 CG7427-RA 301..1164 17..880 4320 100 Plus
CG7427-RD 1472 CG7427-RD 461..1322 19..880 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15564261..15565122 19..880 4310 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:13:50 has no hits.

BO13022.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:10 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 1..867 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:17 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 283..1156 9..884 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:08 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 301..1164 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:11 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 283..1156 9..884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:12 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
CG7427-RA 301..1164 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:12 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15564260..15565122 17..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:08 Download gff for BO13022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15557360..15558222 17..882 99   Plus

BO13022.pep Sequence

Translation from 16 to 898

> BO13022.pep
MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE
YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI
IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF
KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH
KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK
EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYGASFLDH

BO13022.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7427-PE 288 CG7427-PE 1..288 1..288 1549 100 Plus
CG7427-PA 288 CG7427-PA 1..288 1..288 1549 100 Plus
CG7427-PC 297 CG7427-PC 10..297 1..288 1545 99.7 Plus
CG7427-PD 291 CG7427-PD 5..291 2..288 1544 100 Plus
CG7427-PB 291 CG7427-PB 5..291 2..288 1544 100 Plus