Clone Sequence Records
BO13022.3prime Sequence
626 bp (606 high quality bases) assembled on 2006-05-08
> BO13022.3prime
ATGGTCTAGAAAGCTTGCGCCATAGTTCATGTTTGTACTGTGCGAGGTCT
GGTAGGCGCTGGATATGTTCTTTTGGGAGCTGGAGCTAGCACTGGACTGC
TGCTGGTAGCCGGATGCCGGCGAGGAGTCCTCCTTGAGATGATCGTTCTC
CTGGCACCACTCCACAAAGTCGTCTATTAGAACCGGCCAGGCGCCCTCCG
AATCGTAGTTGCTCATCCGGTCGTCGATGTTGGTGGCAAAGTCGAGCAGC
AGGTTCCACGTATCTCGCGAGATGGCCCGCTTGTGTTTCTCCTCGAGGAA
CTGGCACCAGATGTCCAAGAACTTGAAGCGCCCACTAAGAACGATGCACC
AGTAGGCGATTGCCATTTCCAGGTCAATGCCCTTTTGCCCCGGATCCTTG
GCGTAGTTGAAGGTAAAGTGGTAAAAGTCCTTGAACTTGCCGGCGTCGTT
CAGCTCCTGCTCAAGGATGGGCAGCTTGGTCTTTAGCTTGTCGATGCTAT
CGATGCCCAGGTCGCACATGCCATTGATAAACTCATCACGCGAGAACTCG
CACTGCACCTCGGCGTGGAATTTCCACGCTATGATCAGCACCAGTTTTGA
GTCTGGCTTCAGGTCCAAGTCCCCCA
BO13022.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-PA | 867 | CG7427-RA | 261..864 | 622..19 | 3020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-RD | 1472 | CG7427-RD | 715..1322 | 626..19 | 3025 | 99.8 | Minus |
CG7427-RC | 1513 | CG7427-RC | 756..1363 | 626..19 | 3025 | 99.8 | Minus |
CG7427-RB | 1487 | CG7427-RB | 730..1337 | 626..19 | 3025 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15564515..15565122 | 626..19 | 3025 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:39:49 has no hits.
BO13022.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:43 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-PA | 258..867 | 15..625 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:29 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-PA | 258..867 | 15..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:50 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RB | 731..1340 | 15..625 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:16 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RB | 731..1340 | 15..625 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:16 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15564516..15565125 | 15..625 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:50 Download gff for
BO13022.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15557616..15558225 | 15..625 | 99 | | Minus |
BO13022.5prime Sequence
746 bp (668 high quality bases) assembled on 2006-05-08
> BO13022.5prime
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGGGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACGCCGGCAAGTTCAAGGACTTTTACCACTTTACCTTCAACTACGCCA
AGGATCCGGGGCAAAAGGGCATTGACCTGGAAATGGCAATCGCCTACTGG
TGCATCGTTCTTAGTGGGCGCTTCAAGTTCTTGGACATCTGGTGCCAGTT
CCTCGAGGAGAAACACAAGCGGGCCATCTCGCGAGATACGTGGAACCTGC
TGCTCGACTTTGCCACCAACATCGACGACCGGATGAGCAACTACAATTCG
GAGGGCGCCTGGCCGGTTCAATAGACGACTTTGTGGAGTGGTGCCA
BO13022.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-PA | 867 | CG7427-RA | 1..703 | 17..719 | 3490 | 99.8 | Plus |
CG7427-PA | 867 | CG7427-RA | 705..731 | 720..746 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:18:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-RE | 1226 | CG7427-RE | 213..943 | 17..746 | 3615 | 99.7 | Plus |
CG7427-RA | 1601 | CG7427-RA | 301..1031 | 17..746 | 3615 | 99.7 | Plus |
CG7427-RD | 1472 | CG7427-RD | 461..1189 | 19..746 | 3605 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15564261..15564989 | 19..746 | 3580 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:18:26 has no hits.
BO13022.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:44 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-PA | 1..730 | 17..745 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:30 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-PA | 1..730 | 17..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:41:17 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 294..1030 | 9..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:30 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 294..1030 | 9..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:30 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15564262..15564988 | 20..745 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:41:17 Download gff for
BO13022.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15557362..15558088 | 20..745 | 99 | | Plus |
BO13022.complete Sequence
898 bp assembled on 2006-10-11
GenBank Submission: FJ632651
> BO13022.complete
GAAGTTATCAGTCGACATGAACAAACTGAAATCCAGCACGCACCGCGATA
AGGTGAAGAAGTTCATATCGCTGACACACACGGGGGAACAGACGGCAATA
TTCTGTTTGCAACAGAACGACTGGAAATTCGAGTTGGCCAGCGACAATTA
CTTCCAGAATCCGGAGTACTATTACCGGGAGTTGGATCGCAAGCGCATCG
AGCAGCTATTCATGCGCTATCGGGATCCCAGTGATCCCCTAAAGATCGGA
TCCCAGGGCGTAATCCACTTCCTGGAGGACTTGGACCTGAAGCCAGACTC
AAAACTGGTGCTGATCATAGCGTGGAAATTCCACGCCGAGGTGCAGTGCG
AGTTCTCGCGTGATGAGTTTATCAATGGCATGTGCGACCTGGGCATCGAT
AGCATCGACAAGCTAAAGACCAAGCTGCCCATCCTTGAGCAGGAGCTGAA
CGACGCCGGCAAGTTCAAGGACTTTTACCACTTTACCTTCAACTACGCCA
AGGATCCGGGGCAAAAGGGCATTGACCTGGAAATGGCAATCGCCTACTGG
TGCATCGTTCTTAGTGGGCGCTTCAAGTTCTTGGACATCTGGTGCCAGTT
CCTCGAGGAGAAACACAAGCGGGCCATCTCGCGAGATACGTGGAACCTGC
TGCTCGACTTTGCCACCAACATCGACGACCGGATGAGCAACTACGATTCG
GAGGGCGCCTGGCCGGTTCTAATAGACGACTTTGTGGAGTGGTGCCAGGA
GAACGATCATCTCAAGGAGGACTCCTCGCCGGCATCCGGCTACCAGCAGC
AGTCCAGTGCTAGCTCCAGCTCCCAAAAGAACATATCCAGCGCCTACCAG
ACCTCGCACAGTACAAACATGAACTATGGCGCAAGCTTTCTAGACCAT
BO13022.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-RE | 867 | CG7427-PE | 1..864 | 17..880 | 4320 | 100 | Plus |
CG7427-RA | 867 | CG7427-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
CG7427-RD | 876 | CG7427-PD | 12..873 | 19..880 | 4310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-RE | 1226 | CG7427-RE | 213..1076 | 17..880 | 4320 | 100 | Plus |
CG7427-RA | 1601 | CG7427-RA | 301..1164 | 17..880 | 4320 | 100 | Plus |
CG7427-RD | 1472 | CG7427-RD | 461..1322 | 19..880 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15564261..15565122 | 19..880 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:13:50 has no hits.
BO13022.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:10 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 1..867 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:17 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 283..1156 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:43:08 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 301..1164 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:11 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 283..1156 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:12 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7427-RA | 301..1164 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:12 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15564260..15565122 | 17..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:43:08 Download gff for
BO13022.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15557360..15558222 | 17..882 | 99 | | Plus |
BO13022.pep Sequence
Translation from 16 to 898
> BO13022.pep
MNKLKSSTHRDKVKKFISLTHTGEQTAIFCLQQNDWKFELASDNYFQNPE
YYYRELDRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLI
IAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKF
KDFYHFTFNYAKDPGQKGIDLEMAIAYWCIVLSGRFKFLDIWCQFLEEKH
KRAISRDTWNLLLDFATNIDDRMSNYDSEGAWPVLIDDFVEWCQENDHLK
EDSSPASGYQQQSSASSSSQKNISSAYQTSHSTNMNYGASFLDH
BO13022.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7427-PE | 288 | CG7427-PE | 1..288 | 1..288 | 1549 | 100 | Plus |
CG7427-PA | 288 | CG7427-PA | 1..288 | 1..288 | 1549 | 100 | Plus |
CG7427-PC | 297 | CG7427-PC | 10..297 | 1..288 | 1545 | 99.7 | Plus |
CG7427-PD | 291 | CG7427-PD | 5..291 | 2..288 | 1544 | 100 | Plus |
CG7427-PB | 291 | CG7427-PB | 5..291 | 2..288 | 1544 | 100 | Plus |