Clone BO13027 Report

Search the DGRC for BO13027

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptFas3-RB
Protein status:BO13027.pep:
Sequenced Size:1237

Clone Sequence Records

BO13027.3prime Sequence

547 bp (467 high quality bases) assembled on 2006-05-08

> BO13027.3prime
ATGGTCTAGAAAGCTTGCGTACAAGTTCAGCATAGACGAGTTGTTTGTCT
TGGTTTCGTTTGTGGGCGTCTTGATTGATTTGCCGCCAAAACACCATCGG
CCAGTAGCCCGTGCAAACACAATCAGTAAAACGACCAGGACCAAAACGGC
AACGGCGACCACAATGCCAACGATTGCCGCCACATCGAGGCTGCTGCTGG
GCGGTTTGCTCGACGAACTGATTCGCACCTGGTAGTCCGTCAGTCCCAGT
TCATTGCTGGCCCTCAGATTGTAGATTTTGGTGGTATCTTCCAGGGTCAG
TCCGGCAATGGCCAGTGTAACGTTGTACTCATCGTTGCCCAGATACTGCG
GCTCATACGCCGAAGTAACGTCCATCGGTGCGTCCCTGCCCCACAATAGC
TCCATCGATGGTCCACTCGATCTTGGGCTGCGGACTGGCGCGGATGGTTA
TGTTCACAATGGCAGTGTGCTCCAGGTAGAGTCCATACACGGCGGCATCT
GGCTGATGGACGGGAGCATAGCGCACGTTGATGATGTAGGCAGCTTC

BO13027.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5803-PB 1206 Fas3-RB 859..1203 363..19 1725 100 Minus
CG5803-PA 1527 Fas3-RA 859..1171 363..51 1565 100 Minus
CG5803-PB 1206 Fas3-RB 676..854 547..369 870 99.4 Minus
CG5803-PA 1527 Fas3-RA 676..854 547..369 870 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 2422 CG5803-RF 1262..1789 547..19 2590 99.4 Minus
Fas3-RB 2952 CG5803-RB 1262..1789 547..19 2590 99.4 Minus
Fas3-RG 3265 CG5803-RG 1262..1757 547..51 2430 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18384459..18384894 519..83 2105 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 22:08:59 has no hits.

BO13027.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:51 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-PB 676..1206 15..547 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:41 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5803-PB 676..1206 15..547 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:48 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1262..1795 13..547 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:09 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1262..1795 13..547 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:09 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18384153..18384180 520..547 100 -> Minus
2L 18384459..18384893 84..519 99 -> Minus
2L 18387287..18387317 53..83 100 -> Minus
2L 18392245..18392284 13..52 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:48 Download gff for BO13027.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18384153..18384180 520..547 100 -> Minus
arm_2L 18384459..18384893 84..519 99 -> Minus
arm_2L 18387287..18387317 53..83 100 -> Minus
arm_2L 18392245..18392284 13..52 95   Minus

BO13027.5prime Sequence

748 bp (646 high quality bases) assembled on 2006-05-08

> BO13027.5prime
GAAGTTATCAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGGGTGCCCGCCCCCAGGAAACTG
CCTACATCATCAACGTGCGCTATGCTCCCGTCCCATCAGCCAAAATGC

BO13027.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG5803-PA 1527 Fas3-RA 1..668 17..684 3315 99.8 Plus
CG5803-PB 1206 Fas3-RB 1..668 17..684 3315 99.8 Plus
CG5803-PA 1527 Fas3-RA 670..715 688..733 205 97.8 Plus
CG5803-PB 1206 Fas3-RB 670..715 688..733 205 97.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 2422 CG5803-RF 586..1309 16..742 3530 99.3 Plus
Fas3-RG 3265 CG5803-RG 586..1309 16..742 3530 99.3 Plus
Fas3-RE 2567 CG5803-RE 586..1309 16..742 3530 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18383839..18384180 378..721 1610 98.5 Plus
2L 23513712 2L 18383399..18383719 57..377 1605 100 Plus
2L 23513712 2L 18320687..18320730 16..59 220 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:51:57 has no hits.

BO13027.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:52 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-PB 1..728 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:43 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5803-PB 1..728 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:58 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RD 586..1314 16..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:47 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
Fas3-RE 586..1314 16..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:47 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18383402..18383719 60..377 100 -> Plus
2L 18383839..18384180 378..721 98 -> Plus
2L 18320687..18320730 16..59 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:58 Download gff for BO13027.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18320687..18320730 16..59 100 -> Plus
arm_2L 18383402..18383719 60..377 100 -> Plus
arm_2L 18383839..18384180 378..721 98 -> Plus

BO13027.complete Sequence

1237 bp assembled on 2008-01-17

GenBank Submission: FJ632652

> BO13027.complete
GAAGTTATCAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCC
TACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGT
GTATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCG
CCAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGG
CAGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGG
CAACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAG
ATACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACG
GACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCT
CGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCC
TGGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTT
GGCGGCAAATCAATCAAGACGCCCACAAACGAAACCAAGACAAACAACTC
GTCTATGCTGAACTTGTACGCAAGCTTTCTAGACCAT

BO13027.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:42
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 1206 CG5803-PF 1..1203 17..1219 6015 100 Plus
Fas3-RB 1206 CG5803-PB 1..1203 17..1219 6015 100 Plus
Fas3-RG 1674 CG5803-PG 1..1171 17..1187 5855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-RF 2422 CG5803-RF 586..1789 16..1219 6020 100 Plus
Fas3-RB 2952 CG5803-RB 586..1789 16..1219 6020 100 Plus
Fas3-RG 3265 CG5803-RG 586..1757 16..1187 5860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18384459..18384894 720..1155 2180 100 Plus
2L 23513712 2L 18383839..18384180 378..719 1710 100 Plus
2L 23513712 2L 18383399..18383719 57..377 1605 100 Plus
2L 23513712 2L 18320687..18320730 16..59 220 100 Plus
Blast to na_te.dros performed on 2014-11-28 05:30:41 has no hits.

BO13027.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:23 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 1..1206 17..1223 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:58 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 588..1790 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:02 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1789 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:23 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1796 16..1225 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:45 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
Fas3-RB 587..1789 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:45 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18320688..18320730 17..59 100 -> Plus
2L 18383402..18383719 60..377 100 -> Plus
2L 18383839..18384180 378..719 100 -> Plus
2L 18384459..18384893 720..1154 100 -> Plus
2L 18387287..18387317 1155..1185 100 -> Plus
2L 18392245..18392278 1186..1221 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:02 Download gff for BO13027.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18320688..18320730 17..59 100 -> Plus
arm_2L 18383402..18383719 60..377 100 -> Plus
arm_2L 18383839..18384180 378..719 100 -> Plus
arm_2L 18384459..18384893 720..1154 100 -> Plus
arm_2L 18387287..18387317 1155..1185 100 -> Plus
arm_2L 18392245..18392278 1186..1221 94   Plus

BO13027.pep Sequence

Translation from 16 to 1237

> BO13027.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
YASFLDH

BO13027.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Fas3-PF 401 CG5803-PF 1..401 1..401 2079 100 Plus
Fas3-PB 401 CG5803-PB 1..401 1..401 2079 100 Plus
Fas3-PA 508 CG5803-PA 1..396 1..396 2027 98.7 Plus
Fas3-PG 557 CG5803-PG 1..396 1..396 2027 98.7 Plus
Fas3-PE 577 CG5803-PE 1..391 1..391 2024 99.7 Plus