Clone Sequence Records
BO13027.3prime Sequence
547 bp (467 high quality bases) assembled on 2006-05-08
> BO13027.3prime
ATGGTCTAGAAAGCTTGCGTACAAGTTCAGCATAGACGAGTTGTTTGTCT
TGGTTTCGTTTGTGGGCGTCTTGATTGATTTGCCGCCAAAACACCATCGG
CCAGTAGCCCGTGCAAACACAATCAGTAAAACGACCAGGACCAAAACGGC
AACGGCGACCACAATGCCAACGATTGCCGCCACATCGAGGCTGCTGCTGG
GCGGTTTGCTCGACGAACTGATTCGCACCTGGTAGTCCGTCAGTCCCAGT
TCATTGCTGGCCCTCAGATTGTAGATTTTGGTGGTATCTTCCAGGGTCAG
TCCGGCAATGGCCAGTGTAACGTTGTACTCATCGTTGCCCAGATACTGCG
GCTCATACGCCGAAGTAACGTCCATCGGTGCGTCCCTGCCCCACAATAGC
TCCATCGATGGTCCACTCGATCTTGGGCTGCGGACTGGCGCGGATGGTTA
TGTTCACAATGGCAGTGTGCTCCAGGTAGAGTCCATACACGGCGGCATCT
GGCTGATGGACGGGAGCATAGCGCACGTTGATGATGTAGGCAGCTTC
BO13027.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5803-PB | 1206 | Fas3-RB | 859..1203 | 363..19 | 1725 | 100 | Minus |
CG5803-PA | 1527 | Fas3-RA | 859..1171 | 363..51 | 1565 | 100 | Minus |
CG5803-PB | 1206 | Fas3-RB | 676..854 | 547..369 | 870 | 99.4 | Minus |
CG5803-PA | 1527 | Fas3-RA | 676..854 | 547..369 | 870 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 2422 | CG5803-RF | 1262..1789 | 547..19 | 2590 | 99.4 | Minus |
Fas3-RB | 2952 | CG5803-RB | 1262..1789 | 547..19 | 2590 | 99.4 | Minus |
Fas3-RG | 3265 | CG5803-RG | 1262..1757 | 547..51 | 2430 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:08:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18384459..18384894 | 519..83 | 2105 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:08:59 has no hits.
BO13027.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:51 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-PB | 676..1206 | 15..547 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:41 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5803-PB | 676..1206 | 15..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:48 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 1262..1795 | 13..547 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:09 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 1262..1795 | 13..547 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:09 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18384153..18384180 | 520..547 | 100 | -> | Minus |
2L | 18384459..18384893 | 84..519 | 99 | -> | Minus |
2L | 18387287..18387317 | 53..83 | 100 | -> | Minus |
2L | 18392245..18392284 | 13..52 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:48 Download gff for
BO13027.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18384153..18384180 | 520..547 | 100 | -> | Minus |
arm_2L | 18384459..18384893 | 84..519 | 99 | -> | Minus |
arm_2L | 18387287..18387317 | 53..83 | 100 | -> | Minus |
arm_2L | 18392245..18392284 | 13..52 | 95 | | Minus |
BO13027.5prime Sequence
748 bp (646 high quality bases) assembled on 2006-05-08
> BO13027.5prime
GAAGTTATCAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGGGTGCCCGCCCCCAGGAAACTG
CCTACATCATCAACGTGCGCTATGCTCCCGTCCCATCAGCCAAAATGC
BO13027.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5803-PA | 1527 | Fas3-RA | 1..668 | 17..684 | 3315 | 99.8 | Plus |
CG5803-PB | 1206 | Fas3-RB | 1..668 | 17..684 | 3315 | 99.8 | Plus |
CG5803-PA | 1527 | Fas3-RA | 670..715 | 688..733 | 205 | 97.8 | Plus |
CG5803-PB | 1206 | Fas3-RB | 670..715 | 688..733 | 205 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 2422 | CG5803-RF | 586..1309 | 16..742 | 3530 | 99.3 | Plus |
Fas3-RG | 3265 | CG5803-RG | 586..1309 | 16..742 | 3530 | 99.3 | Plus |
Fas3-RE | 2567 | CG5803-RE | 586..1309 | 16..742 | 3530 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18383839..18384180 | 378..721 | 1610 | 98.5 | Plus |
2L | 23513712 | 2L | 18383399..18383719 | 57..377 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 18320687..18320730 | 16..59 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:51:57 has no hits.
BO13027.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:52 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-PB | 1..728 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:43 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5803-PB | 1..728 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:17:58 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RD | 586..1314 | 16..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:56:47 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RE | 586..1314 | 16..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 16:56:47 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
2L | 18383839..18384180 | 378..721 | 98 | -> | Plus |
2L | 18320687..18320730 | 16..59 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:17:58 Download gff for
BO13027.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18320687..18320730 | 16..59 | 100 | -> | Plus |
arm_2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
arm_2L | 18383839..18384180 | 378..721 | 98 | -> | Plus |
BO13027.complete Sequence
1237 bp assembled on 2008-01-17
GenBank Submission: FJ632652
> BO13027.complete
GAAGTTATCAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCA
TCTTAACAGATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACA
GCGCTCCTCAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAG
ATCCATCAACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCA
ACCTGTCGCCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCG
GGTCTCACGGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAG
CAACAATGGCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGT
CGGGCACCATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATC
GAGCTGTTGTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGA
ATTCAGGGCCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCT
CGTGGTACATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAG
GTCATGTCCTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGA
AATCCAGTGGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCC
GCTCCCACCACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCC
TACATCATCAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGT
GTATGGACTCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCG
CCAGTCCGCAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGG
CAGGGACGCACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGG
CAACGATGAGTACAACGTTACACTGGCCATTGCCGGACTGACCCTGGAAG
ATACCACCAAAATCTACAATCTGAGGGCCAGCAATGAACTGGGACTGACG
GACTACCAGGTGCGAATCAGTTCGTCGAGCAAACCGCCCAGCAGCAGCCT
CGATGTGGCGGCAATCGTTGGCATTGTGGTCGCCGTTGCCGTTTTGGTCC
TGGTCGTTTTACTGATTGTGTTTGCACGGGCTACTGGCCGATGGTGTTTT
GGCGGCAAATCAATCAAGACGCCCACAAACGAAACCAAGACAAACAACTC
GTCTATGCTGAACTTGTACGCAAGCTTTCTAGACCAT
BO13027.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 1206 | CG5803-PF | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Fas3-RB | 1206 | CG5803-PB | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Fas3-RG | 1674 | CG5803-PG | 1..1171 | 17..1187 | 5855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-RF | 2422 | CG5803-RF | 586..1789 | 16..1219 | 6020 | 100 | Plus |
Fas3-RB | 2952 | CG5803-RB | 586..1789 | 16..1219 | 6020 | 100 | Plus |
Fas3-RG | 3265 | CG5803-RG | 586..1757 | 16..1187 | 5860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:30:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18384459..18384894 | 720..1155 | 2180 | 100 | Plus |
2L | 23513712 | 2L | 18383839..18384180 | 378..719 | 1710 | 100 | Plus |
2L | 23513712 | 2L | 18383399..18383719 | 57..377 | 1605 | 100 | Plus |
2L | 23513712 | 2L | 18320687..18320730 | 16..59 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:30:41 has no hits.
BO13027.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:23 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 1..1206 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:58 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 588..1790 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:02 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1789 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:23 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1796 | 16..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:12:45 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fas3-RB | 587..1789 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:12:45 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
2L | 18392245..18392278 | 1186..1221 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:02 Download gff for
BO13027.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18320688..18320730 | 17..59 | 100 | -> | Plus |
arm_2L | 18383402..18383719 | 60..377 | 100 | -> | Plus |
arm_2L | 18383839..18384180 | 378..719 | 100 | -> | Plus |
arm_2L | 18384459..18384893 | 720..1154 | 100 | -> | Plus |
arm_2L | 18387287..18387317 | 1155..1185 | 100 | -> | Plus |
arm_2L | 18392245..18392278 | 1186..1221 | 94 | | Plus |
BO13027.pep Sequence
Translation from 16 to 1237
> BO13027.pep
MSRIVFICLAAILTDALTWAQVNVEPNTALLNEGDRTELLCRYGRSINYC
RIEIPGEQKVLNLSPEWSKTPGFTYFGAGLTAGQCGVSIERVKASNNGQV
KCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFRARC
SVRDGRPPANISWYIDNMPANKRTTPLEVMSSTNDNVELSTSVQEIQWHL
SPEDSNRKLVCRSHHQTDRESVPPQEAAYIINVRYAPVHQPDAAVYGLYL
EHTAIVNITIRASPQPKIEWTIDGAIVGQGRTDGRYSAYEPQYLGNDEYN
VTLAIAGLTLEDTTKIYNLRASNELGLTDYQVRISSSSKPPSSSLDVAAI
VGIVVAVAVLVLVVLLIVFARATGRWCFGGKSIKTPTNETKTNNSSMLNL
YASFLDH
BO13027.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fas3-PF | 401 | CG5803-PF | 1..401 | 1..401 | 2079 | 100 | Plus |
Fas3-PB | 401 | CG5803-PB | 1..401 | 1..401 | 2079 | 100 | Plus |
Fas3-PA | 508 | CG5803-PA | 1..396 | 1..396 | 2027 | 98.7 | Plus |
Fas3-PG | 557 | CG5803-PG | 1..396 | 1..396 | 2027 | 98.7 | Plus |
Fas3-PE | 577 | CG5803-PE | 1..391 | 1..391 | 2024 | 99.7 | Plus |