Clone Sequence Records
BO13029.3prime Sequence
706 bp (656 high quality bases) assembled on 2006-05-08
> BO13029.3prime
ATGGTCTAGAAAGCTTGCCTCCTTCTTGTTGAGGAAGTGGAGGACATAGT
GGAGCACCAGATCGTAGCAGTACTTGTACTCCGTCATATTCTCGACTAGC
TGAGGACGATGCCGGCGCACAGTCTTCACCGCTTGGAAGACATCGACCTC
GCCGTGCTGGATGACCTGCTCGATGCACGCATTCGCGGCACAGTAAACAC
CGGCACGACTGCGACCATCGGGCGAGACAACGCACACAGGCCCGTAGTCG
ACCTTGTTCCGCCAGATCTCGACCATGTTCATCAGGTAGACCAGCGAGTT
CGTCGAGCTGGGCACCTTGTGACCCATGGGCCAGCAGGTCAGCTGGAACA
GTTGGACGGTTCGTGTCGGGGCCTTCACCCCGGCCATCATTTCGGTCAGC
GAGACGATCTTCTTGTTGATCTTGAACTCCCATTGCTTGATGTTCGTATA
GCTCTTGGACATCACATAGTGCACGGAGAACACCGGTCCGTACTTCTCCA
TCTTCGATTTGTTGGGCCAGAACGAGGGATACTGCTGCGATTGCGAGGGC
GGCTGGCACAAGACTACAACGGCCGAGCACTCCTGGTCGTAGACCAGGGA
CCAAAACTCACCCAGCGTATGCTTCATGGGCCATTCAGTGACTATGTACT
CCCCTGGGCTTGGTATACCCCGTCACGAAACACCGAGTTTATGTAGTCCC
GTAAGG
BO13029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7180-PA | 2049 | CG7180-RA | 1412..2046 | 653..19 | 3150 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 2258..2936 | 699..19 | 3295 | 99.3 | Minus |
| Ptp36E-RB | 3524 | CG7180-RB | 1658..2336 | 699..19 | 3295 | 99.3 | Minus |
| Ptp36E-RA | 3415 | CG7180-RA | 1661..2339 | 699..19 | 3295 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18182072..18182750 | 19..699 | 3245 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:21:13 has no hits.
BO13029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:55 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1361..2049 | 16..706 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:47 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1361..2049 | 16..706 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:57 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 1654..2344 | 14..706 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:20 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 1654..2344 | 14..706 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:20 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18182067..18182756 | 14..706 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:57 Download gff for
BO13029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18182067..18182756 | 14..706 | 98 | | Plus |
BO13029.5prime Sequence
630 bp (613 high quality bases) assembled on 2006-05-08
> BO13029.5prime
GAAGTTATCAGTCGACATGACGGCGGCCACGGGTGGTGGGAGTAGTGGGG
CGGGGGGTGGTAAGACTGGAAAGCACAGGTCGAGGTCATCTGCCCGCTAC
GACGATGTGGAAAAGCAGCAGAGGAAAAGCCGAGCCATCGTCTCCATACC
GAACACCATCAAACTGAGTATGCTCAACAGCGGACTGCTGTCGTTTGAAA
GGATAAAGCTCGAGGCACGAGATGAGAACAATTCTCTGTCCAAGACGATA
CCCAACGGACCCATCGATATCAGGCATTTTCTCAAGCTCTGCGATCTGCG
CAGAAAGTTCCCGGTCCTCTACAAACTGGAATTCCAAACTGCGGCCAAGG
TGGAGAGTAACACCTGTCGGCATGCCTTGAAGAAGAACAACCTGGAGAAG
AACCAGAATCCCAAGTGCATTCCCTATGACTACAATCGGGTGGTGCTGGA
GAAGGTGGGTGGCCTGCAGGACTCGGACTATGTGAACGCTTCCTATGTGG
ACAGCCTGCTCAAGCCGAACGCGTACATAGTGACACAGGGACCTGTCGAG
GAGACGGTCCAGGCCTACTGGCGAATGGTTTGGCAGGAAAACATCAGTGC
CATTGTTATGCTGACGAAGACCTTTGACTT
BO13029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7180-PA | 2049 | CG7180-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 891..1504 | 17..630 | 3070 | 100 | Plus |
| Ptp36E-RB | 3524 | CG7180-RB | 291..904 | 17..630 | 3070 | 100 | Plus |
| Ptp36E-RA | 3415 | CG7180-RA | 294..907 | 17..630 | 3070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18183504..18184117 | 630..17 | 3070 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Transpac | 5249 | Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). | 502..547 | 357..402 | 113 | 71.7 | Plus |
BO13029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:56 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1..614 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:48 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-PA | 1..614 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:16 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 287..907 | 10..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:01:06 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 287..907 | 10..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:01:06 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18183504..18184124 | 10..630 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:16 Download gff for
BO13029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18183504..18184124 | 10..630 | 99 | | Minus |
BO13029.complete Sequence
2080 bp assembled on 2008-01-17
GenBank Submission: FJ632653
> BO13029.complete
GAAGTTATCAGTCGACATGACGGCGGCCACGGGTGGTGGGAGTAGTGGGG
CGGGGGGTGGTAAGACTGGAAAGCACAGGTCGAGGTCATCTGCCCGCTAC
GACGATGTGGAAAAGCAGCAGAGGAAAAGCCGAGCCATCGTCTCCATACC
GAACACCATCAAACTGAGTATGCTCAACAGCGGACTGCTGTCGTTTGAAA
GGATAAAGCTCGAGGCACGAGATGAGAACAATTCTCTGTCCAAGACGATA
CCCAACGGACCCATCGATATCAGGCATTTTCTCAAGCTCTGCGATCTGCG
CAGAAAGTTCCCGGTCCTCTACAAACTGGAATTCCAAACTGCGGCCAAGG
TGGAGAGTAACACCTGTCGGCATGCCTTGAAGAAGAACAACCTGGAGAAG
AACCAGAATCCCAAGTGCATTCCCTATGACTACAATCGGGTGGTGCTGGA
GAAGGTGGGTGGCCTGCAGGACTCGGACTATGTGAACGCTTCCTATGTGG
ACAGCCTGCTCAAGCCGAACGCGTACATAGTGACACAGGGACCTGTCGAG
GAGACGGTCCAGGCCTACTGGCGAATGGTTTGGCAGGAAAACATCAGTGC
CATTGTTATGCTGACGAAGACCTTTGACTTCGCCAAGGTAATGTGCCACC
AGTACTGGCCACCCAACATGGAGGTTCACGAGCAGTACGGCGATATCTTC
ATCAATATCGTCAGGGAGGAGCAACTGGCCAATTTCCATATACGAACCTT
CAGGCTCTACAAGATGAACGAAAAGCAGGAGGTGACCGACGAGAGGTTGA
TCCTTCAGTTCCACTACACCGAATGGTACTCCCACTCGTGTCCCTTTTCC
AATGCCCTGTTGGAGTTCCGGAGGAGAGTTCGCCTTGTCGTGGGCAACAT
CATCAAGGACGAGGACGACATGAGGGGTCCCATCTTGGTCCACTGCAGCG
ATGGCGGCGGCAGATCGGGAGTCTATATGTCCATCGATGCCAACCTGGAG
CTGGCGGAGGAGGAGGAGTGCTTCAATGTCTTCGGCTACCTCAAGAAGTT
AAGGCAATCGCGGAAGGGTCTGGTGGAGAATGTGGAGCAATATAAGTTTA
TATACGACACCCTGGAGGAGCACATTATTTGCGGCAAGACCTGGTTCCCG
GTCTCGGAACTTTCCGATCGCTTAAAGGCCAAGGCCAGGAGGAATTCGGG
CACTAAAATGAACGAATATCAGGCGGAGTACGATCAGATCTGCAAGCAAA
CCCCACGATTCACCATAGGCGATTGCGCCGGCGGTCACCGGGCGGATAAT
CGCGAGAAGAACAGGGATGTCCTGTGCGTACCACCCGATAACTTCCGGCC
CTACCTGACCTCCTTCCAGGGCAATGCCTTTACGGACTACATAAACTCGG
TGTTCGTGGACGGGTATACCAAGCCCAGGGAGTACATAGTCACTGAATGG
CCCATGAAGCATACGCTGGGTGAGTTCTGGTCCCTGGTCTACGACCAGGA
GTGCTCGGCCGTTGTAGTCTTGTGCCAGCCGCCCTCGCAATCGCAGCAGT
ATCCCTCGTTCTGGCCCAACAAATCGAAGATGGAGAAGTACGGACCGGTG
TTCTCCGTGCACTATGTGATGTCCAAGAGCTATACGAACATCAAGCAATG
GGAGTTCAAGATCAACAAGAAGATCGTCTCGCTGACCGAAATGATGGCCG
GGGTGAAGGCCCCGACACGAACCGTCCAACTGTTCCAGCTGACCTGCTGG
CCCATGGGTCACAAGGTGCCCAGCTCGACGAACTCGCTGGTCTACCTGAT
GAACATGGTCGAGATCTGGCGGAACAAGGTCGACTACGGGCCTGTGTGCG
TTGTCTCGCCCGATGGTCGCAGTCGTGCCGGTGTTTACTGTGCCGCGAAT
GCGTGCATCGAGCAGGTCATCCAGCACGGCGAGGTCGATGTCTTCCAAGC
GGTGAAGACTGTGCGCCGGCATCGTCCTCAGCTAGTCGAGAATATGACGG
AGTACAAGTACTGCTACGATCTGGTGCTCCACTATGTCCTCCACTTCCTC
AACAAGAAGGAGGCAAGCTTTCTAGACCAT
BO13029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 2049 | CG7180-PC | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| Ptp36E-RB | 2049 | CG7180-PB | 1..2046 | 17..2062 | 10230 | 100 | Plus |
| Ptp36E-RA | 2049 | CG7180-PA | 1..2046 | 17..2062 | 10230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 891..2936 | 17..2062 | 10230 | 100 | Plus |
| Ptp36E-RB | 3524 | CG7180-RB | 291..2336 | 17..2062 | 10230 | 100 | Plus |
| Ptp36E-RA | 3415 | CG7180-RA | 294..2339 | 17..2062 | 10230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18182072..18184117 | 2062..17 | 10230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:07 has no hits.
BO13029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:24 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 1..2049 | 17..2065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:20 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 292..2337 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:43 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 294..2339 | 17..2064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:24 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 285..2342 | 10..2067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:22 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 294..2339 | 17..2064 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:22 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18182069..18184117 | 17..2064 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:43 Download gff for
BO13029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18182069..18184117 | 17..2064 | 99 | | Minus |
BO13029.pep Sequence
Translation from 16 to 2080
> BO13029.pep
MTAATGGGSSGAGGGKTGKHRSRSSARYDDVEKQQRKSRAIVSIPNTIKL
SMLNSGLLSFERIKLEARDENNSLSKTIPNGPIDIRHFLKLCDLRRKFPV
LYKLEFQTAAKVESNTCRHALKKNNLEKNQNPKCIPYDYNRVVLEKVGGL
QDSDYVNASYVDSLLKPNAYIVTQGPVEETVQAYWRMVWQENISAIVMLT
KTFDFAKVMCHQYWPPNMEVHEQYGDIFINIVREEQLANFHIRTFRLYKM
NEKQEVTDERLILQFHYTEWYSHSCPFSNALLEFRRRVRLVVGNIIKDED
DMRGPILVHCSDGGGRSGVYMSIDANLELAEEEECFNVFGYLKKLRQSRK
GLVENVEQYKFIYDTLEEHIICGKTWFPVSELSDRLKAKARRNSGTKMNE
YQAEYDQICKQTPRFTIGDCAGGHRADNREKNRDVLCVPPDNFRPYLTSF
QGNAFTDYINSVFVDGYTKPREYIVTEWPMKHTLGEFWSLVYDQECSAVV
VLCQPPSQSQQYPSFWPNKSKMEKYGPVFSVHYVMSKSYTNIKQWEFKIN
KKIVSLTEMMAGVKAPTRTVQLFQLTCWPMGHKVPSSTNSLVYLMNMVEI
WRNKVDYGPVCVVSPDGRSRAGVYCAANACIEQVIQHGEVDVFQAVKTVR
RHRPQLVENMTEYKYCYDLVLHYVLHFLNKKEASFLDH
BO13029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-PC | 682 | CG7180-PC | 1..682 | 1..682 | 3651 | 100 | Plus |
| Ptp36E-PB | 682 | CG7180-PB | 1..682 | 1..682 | 3651 | 100 | Plus |
| Ptp36E-PA | 682 | CG7180-PA | 1..682 | 1..682 | 3651 | 100 | Plus |
| Lar-PD | 1912 | CG10443-PD | 1332..1909 | 78..679 | 740 | 30.4 | Plus |
| Lar-PH | 1927 | CG10443-PH | 1347..1924 | 78..679 | 740 | 30.4 | Plus |
