Clone Sequence Records
BO13030.5prime Sequence
718 bp (677 high quality bases) assembled on 2006-05-08
> BO13030.5prime
GAAGTTATCAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTGGGAC
ATGTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCC
AGCACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAAC
TTTGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTAC
CTCAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCA
AGTCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCT
CCTGGTGGTGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCC
TCATTATCGGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAA
ATAGATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACG
CTTGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGC
CCATATGTGCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTTGCGA
GAAGTACTTAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCGATCC
ACTCTTCATGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGAACCG
TTTGCACTGGCACTCTGCTCCAGGGAAAGGTTCAGGTAAACAATGTGATT
GAGCTGCCAGCTCTTGGG
BO13030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9841-PA | 1536 | EfSec-RA | 1..702 | 17..718 | 3510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..772 | 17..718 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21385393..21385837 | 718..274 | 2225 | 100 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:22:35 has no hits.
BO13030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:58 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:51 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9841-PA | 1..702 | 17..718 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:14 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..772 | 8..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:00:10 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 61..772 | 8..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:00:10 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21385893..21386161 | 8..275 | 98 | | Minus |
| 2R | 21385393..21385835 | 276..718 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:14 Download gff for
BO13030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272898..17273340 | 276..718 | 100 | <- | Minus |
| arm_2R | 17273398..17273666 | 8..275 | 98 | | Minus |
BO13030.3prime Sequence
599 bp (598 high quality bases) assembled on 2006-05-08
> BO13030.3prime
ATGGTCTAGAAAGCTTGCTTGAAACAAGCCTGCCTGTTTATTGAACACAT
ATTTCTTACAGTTCAGCAAAACCTTAACATTCTTCACATTGCTTATTGTT
TCAGGAGATAGGGCGTCCTGAAAAGTTATAGCCACTTTGGATGTCTGGCC
AAAGGTGCGTTCAATGCGACCCTTCTCTCCCGTCGAGAGCTCCACATTCT
TGCCGACGTACAAATCACGTTTGGCGTCCTTAAAAAGGTTTTGAACTATC
ACTTCGCTGCTATTGACCACTCGCTGAATGCTTCCCACTTTCTGTTTGCG
CTTGAAAATCCGCAGTTTCGGCAGTTCTTCCTGAAAGTATTTGGAACTGT
GCGTCTGCCAGGCAATGCGTCCCCAAAACGCCAATCTACAACTGGTACTA
TGGACATCCATGTCCAGCTTCGAAGCAATCAGCGTTGAATGTGGCGGAGA
TAGAACAGGACTTTCGAATTGCAACAGAGCGTAGATCACATCATTATGTT
GAACCTCCGCAGGCTGGACGTCCTCCATATACTCGTATTCTTTGTCCAGT
TGGAAAGTGGAAGTTGTGCCGTCCGTATCCCGAAACAAAGTTACATTGG
BO13030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9841-PA | 1536 | EfSec-RA | 953..1533 | 599..19 | 2905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 1023..1603 | 599..19 | 2905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21384562..21385142 | 19..599 | 2905 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:17:53 has no hits.
BO13030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:52:57 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-PA | 953..1536 | 16..599 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:49 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9841-PA | 953..1536 | 16..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:24:15 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 1023..1613 | 11..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:14:42 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 1023..1613 | 11..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:14:42 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21384552..21385142 | 11..599 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:24:15 Download gff for
BO13030.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272057..17272647 | 11..599 | 99 | | Plus |
BO13030.complete Sequence
1567 bp assembled on 2008-01-17
GenBank Submission: FJ632654
> BO13030.complete
GAAGTTATCAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTGGGAC
ATGTTGACAGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCC
AGCACGGCCGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAAC
TTTGGATTTGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTAC
CTCAAGGAGAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCA
AGTCTTATACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCT
CCTGGTGGTGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCC
TCATTATCGGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAA
ATAGATGTTTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACG
CTTGCGGCTCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGC
CCATATGTGCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTTGCGA
GAAGTACTTAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCGATCC
ACTCTTCATGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGAACCG
TTTGCACTGGCACTCTGCTCCAGGGAAAGGTTCAGGTAAACAATGTGATT
GAGCTGCCAGCTCTTGGGGAGCAAAGGAAAGTGAAGTCCATACAGATGTT
TCGCAAAAACGTGACCAGCGCCTCTATGGGCGACAGAATTGGGCTTTGCG
TGACACAATTCAATGCAAAGCTGCTGGAGCGTGGAATCATTACCCAACCG
GGTTACCTGAAACCCATCTATGCCGTGTGTCTACAGTTTAAACCCATCCG
CTATTACAAGGAAGTCATAAAATCTATGAGGAAGATGCACATCTCCGTGG
GACACAACACAGTGATGGCCAATGTAACTTTGTTTCGGGATACGGACGGC
ACAACTTCCACTTTCCAACTGGACAAAGAATACGAGTATATGGAGGACGT
CCAGCCTGCGGAGGTTCAACATAATGATGTGATCTACGCTCTGTTGCAAT
TCGAAAGTCCTGTTCTATCTCCGCCACATTCAACGCTGATTGCTTCGAAG
CTGGACATGGATGTCCATAGTACCAGTTGTAGATTGGCGTTTTGGGGACG
CATTGCCTGGCAGACGCACAGTTCCAAATACTTTCAGGAAGAACTGCCGA
AACTGCGGATTTTCAAGCGCAAACAGAAAGTGGGAAGCATTCAGCGAGTG
GTCAATAGCAGCGAAGTGATAGTTCAAAACCTTTTTAAGGACGCCAAACG
TGATTTGTACGTCGGCAAGAATGTGGAGCTCTCGACGGGAGAGAAGGGTC
GCATTGAACGCACCTTTGGCCAGACATCCAAAGTGGCTATAACTTTTCAG
GACGCCCTATCTCCTGAAACAATAAGCAATGTGAAGAATGTTAAGGTTTT
GCTGAACTGTAAGAAATATGTGTTCAATAAACAGGCAGGCTTGTTTCAAG
CAAGCTTTCTAGACCAT
BO13030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1536 | CG9841-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..1603 | 17..1549 | 7665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21384562..21385837 | 1549..274 | 6380 | 100 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:22 has no hits.
BO13030.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:25 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 1..1536 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:42 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 65..1597 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:25 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 71..1603 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:25 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 55..1604 | 8..1554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:34 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 71..1603 | 17..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:34 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21384558..21385835 | 276..1551 | 99 | <- | Minus |
| 2R | 21385893..21386151 | 17..275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:25 Download gff for
BO13030.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272063..17273340 | 276..1551 | 99 | <- | Minus |
| arm_2R | 17273398..17273656 | 17..275 | 100 | | Minus |
BO13030.pep Sequence
Translation from 16 to 1567
> BO13030.pep
MPINFNIGLLGHVDSGKTTLAKALSSISSTAAFDKNPQSVERGITLDLGF
SGLLVDAPAHLPQGEQLQFTFVDCPGHASLIRTIIGGAQIIDLMLLVVDA
QKGKQTQTAECLIIGELLQKKLIVVINKIDVYPENQRASKLEKLRLRLAK
TLEATTFGGQVPICAVSALQGTHIAELREVLREAYFQPQRNLADPLFMYV
DHCFGIKGQGTVCTGTLLQGKVQVNNVIELPALGEQRKVKSIQMFRKNVT
SASMGDRIGLCVTQFNAKLLERGIITQPGYLKPIYAVCLQFKPIRYYKEV
IKSMRKMHISVGHNTVMANVTLFRDTDGTTSTFQLDKEYEYMEDVQPAEV
QHNDVIYALLQFESPVLSPPHSTLIASKLDMDVHSTSCRLAFWGRIAWQT
HSSKYFQEELPKLRIFKRKQKVGSIQRVVNSSEVIVQNLFKDAKRDLYVG
KNVELSTGEKGRIERTFGQTSKVAITFQDALSPETISNVKNVKVLLNCKK
YVFNKQAGLFQASFLDH
BO13030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-PA | 511 | CG9841-PA | 1..511 | 1..511 | 2604 | 100 | Plus |
| CG12736-PA | 456 | CG12736-PA | 59..338 | 6..275 | 306 | 29.7 | Plus |
| EfTuM-PB | 489 | CG6050-PB | 84..373 | 6..284 | 263 | 28.7 | Plus |
| EfTuM-PA | 489 | CG6050-PA | 84..373 | 6..284 | 263 | 28.7 | Plus |
| Ef1alpha100E-PD | 462 | CG1873-PD | 6..325 | 3..275 | 205 | 24.6 | Plus |
