Clone Sequence Records
BO13032.5prime Sequence
712 bp (649 high quality bases) assembled on 2006-05-08
> BO13032.5prime
GAAGTTATCAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTT
CGGACAATTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAG
GCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAA
CTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTC
GCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACC
TTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGA
GGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGC
ACGAGGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAAT
CCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAA
GATCGCCGGAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGC
GGATGTCTATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAA
GTGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAAGTGCAACACGGA
GCAGGCGGGCAAACCCAAGTGCCCGCCTGGACCCCTTCTTCATCATGCCG
GACAAGTGCAAGTGCGTCGATTTTCCAGACCCTTAAGTTGCAAGAGCTCC
CCAACTTTGTGC
BO13032.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4082-PA | 2202 | Mcm5-RA | 1..610 | 17..626 | 3025 | 99.8 | Plus |
CG4082-PA | 2202 | Mcm5-RA | 610..656 | 627..673 | 235 | 100 | Plus |
CG4082-PA | 2202 | Mcm5-RA | 654..694 | 672..712 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm5-RA | 2452 | CG4082-RA | 142..835 | 17..712 | 3400 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10788870..10789412 | 168..712 | 2595 | 99.3 | Plus |
3R | 32079331 | 3R | 10788665..10788816 | 17..168 | 760 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 03:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1755..1793 | 114..152 | 114 | 76.9 | Plus |
BO13032.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:01 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-PA | 1..694 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:55 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4082-PA | 1..694 | 17..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:46 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 137..835 | 12..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:08 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 137..835 | 12..712 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:08 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10788660..10788816 | 12..168 | 98 | -> | Plus |
3R | 10788871..10789412 | 169..712 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:46 Download gff for
BO13032.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6614382..6614538 | 12..168 | 98 | -> | Plus |
arm_3R | 6614593..6615134 | 169..712 | 99 | | Plus |
BO13032.complete Sequence
2233 bp assembled on 2008-11-10
GenBank Submission: KX795449
> BO13032.complete
GAAGTTATCAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTT
CGGACAATTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAG
GCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAA
CTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTC
GCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACC
TTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGA
GGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGC
ACGAGGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAAT
CCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAA
GATCGCCGGAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGC
GGATGTCTATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAA
GTGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAAGTGCAACACGGA
GCAGGCGGGCAGACCCAAGTGCCCGCTGGACCCCTTCTTCATCATGCCGG
ACAAGTGCAAGTGCGTCGATTTCCAGACCCTTAAGTTGCAAGAGCTCCCC
GACTTTGTGCCACAGGGTGAGATTCCCCGCCACTTGCAGCTCTTCTGCGA
TCGCTCGCTCTGTGAACGCGTGGTGCCCGGCAATCGCGTGCTTATCCAGG
GCATATACTCCATTCGCAAGGTGGGCAAACCCTCGCGTCGGGATGGTCGC
GAGAAAGCCGTCGTTGGAGTCCGTGCTCCTTACATGAGGGTGGTGGGCAT
CACCGTCGACTCAGAGGGTGCGGGTGCCATCTCCCGATACAGCAACATCA
CATCCGATGAGGAGGAGCACTTCCGGCGAATGGCCGCCTCTGGGGACATC
TACGAACGTCTCTCACAGTCACTGGCGCCCAGCATCTTCGGCTCTCGGGA
TATCAAGAAAGCTATAACTTGTATGCTTTTTGGCGGGTCTCGTAAGCGTT
TACCGGATGGTCTGTGCCGTCGAGGCGACATTAACGTCTTACTGCTGGGA
GATCCTGGTACTGCCAAGTCACAGTTGTTAAAGTTTGTGGAGAAGGTGGC
ACCCATAGCAGTCTACACTTCGGGCAAAGGCTCCAGTGCGGCTGGTCTCA
CGGCTTCGGTTATGAAGGATCCTCAAACGCGTAACTTTGTCATGGAGGGT
GGAGCCATGGTGCTGGCCGATGGAGGCGTGGTTTGTATTGATGAGTTCGA
CAAAATGCGAGAGGATGATCGTGTGGCCATTCACGAGGCCATGGAACAGC
AGACAATATCCATTGCCAAAGCCGGCATCACGACCACCTTGAACTCACGC
TGTTCGGTCTTGGCAGCTGCCAACTCCATTTTCGGTCGATGGGACGACAC
CAAGGGCGAGGAGAACATTGACTTTATGCCCACAATTCTCTCCCGTTTCG
ACATGATTTTCATTGTAAAGGATATTCACGATGAGTCGCGGGACATTACG
CTGGCCAAGCACATCATCAACGTGCATCTGAGCTCTAACAAGTCAGCGCC
TTCAGAGCCGGCTGAGGGTGAGATATCGCTGTCGACGTTCAAGAAGTATA
TTCACTACTGCCGAACTCATTGCGGTCCGCGCCTGAGCGAAGCTGCCGGC
GAGAAGCTAAAGAGCCGCTACGTGCTTATGCGCAGTGGAGCCGGCCAGCA
GGAGAAGGCATCTGACAAGCGGCTAAGCATTCCCATCACTGTGCGTCAGT
TGGAGGCTGTCATCCGCATTTCGGAGTCGCTGGCAAAGATTCGTTTGCAA
CCGTTCGCCACAGATGAGCACGTGAACGAAGCACTTCGACTTTTCCAAGT
GTCTACCCTTGATGCTGCGATGACTGGCAGCTTGGCTGGAGCCGAAGGAT
TCACGACCGAGGAGGACCAGGAAACACTCAACCGCATCGAAAAGCAATTG
AAACGTCGCTTTGCAATTGGATCTCAAGTATCGGAGCAGAATATCTTACA
GGACTTTTTGCGTCAGAAATACGAAGAACGCACGGTAATGAAGGTAATTC
ATACCATGATCCGACGTGGAGAGCTGCAGCACCGGATGCAACGGAAGATG
CTCTATCGAATTTGCGCAAGCTTTCTAGACCAT
BO13032.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm5-RA | 2202 | CG4082-PA | 1..2199 | 17..2215 | 10995 | 100 | Plus |
Mcm7-RA | 2163 | CG4978-PA | 1330..1463 | 1337..1470 | 235 | 78.4 | Plus |
Mcm6-RA | 2454 | CG4039-PA | 1387..1430 | 1373..1416 | 190 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm5-RA | 2452 | CG4082-RA | 142..2340 | 17..2215 | 10995 | 100 | Plus |
Mcm7-RA | 2451 | CG4978-RA | 1483..1616 | 1337..1470 | 235 | 78.4 | Plus |
Mcm6-RA | 2790 | CG4039-RA | 1506..1549 | 1373..1416 | 190 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10788870..10789981 | 168..1279 | 5560 | 100 | Plus |
3R | 32079331 | 3R | 10790039..10790862 | 1279..2102 | 4120 | 100 | Plus |
3R | 32079331 | 3R | 10788665..10788816 | 17..168 | 760 | 100 | Plus |
3R | 32079331 | 3R | 10790923..10791038 | 2100..2215 | 580 | 100 | Plus |
3L | 28110227 | 3L | 8893280..8893413 | 1337..1470 | 235 | 78.4 | Plus |
X | 23542271 | X | 6675892..6675935 | 1373..1416 | 190 | 95.5 | Plus |
Blast to na_te.dros performed 2014-11-27 20:41:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1-2 | 3216 | R1-2 R1-2 3216bp | 1755..1793 | 114..152 | 114 | 76.9 | Plus |
BO13032.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:21 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 133..2339 | 12..2219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:27 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 142..2340 | 17..2217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:07 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 138..2336 | 17..2217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:30 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcm5-RA | 142..2340 | 17..2217 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:30 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10788665..10788816 | 17..168 | 100 | -> | Plus |
3R | 10788871..10789981 | 169..1279 | 100 | -> | Plus |
3R | 10790040..10790861 | 1280..2101 | 100 | -> | Plus |
3R | 10790925..10791038 | 2102..2217 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:27 Download gff for
BO13032.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6614387..6614538 | 17..168 | 100 | -> | Plus |
arm_3R | 6614593..6615703 | 169..1279 | 100 | -> | Plus |
arm_3R | 6615762..6616583 | 1280..2101 | 100 | -> | Plus |
arm_3R | 6616647..6616760 | 2102..2217 | 98 | | Plus |
BO13032.pep Sequence
Translation from 16 to 2233
> BO13032.pep
MEGFDDAGVFFSDNFGGDNQQDAQINLQAVKKKYKEFIRTFNEENFFYKY
RDTLKRNYLNGRYFLEIEMEDLVGFDETLADKLNKQPTEHLEIFEEAARE
VADEITAPRPEHEEHMHDIQILLSSNANPTNIRQLKSDCVSKLVKIAGII
VAASGISAKATRMSIQCLSCSTVIPNLKVNPGLEGYALPRKCNTEQAGRP
KCPLDPFFIMPDKCKCVDFQTLKLQELPDFVPQGEIPRHLQLFCDRSLCE
RVVPGNRVLIQGIYSIRKVGKPSRRDGREKAVVGVRAPYMRVVGITVDSE
GAGAISRYSNITSDEEEHFRRMAASGDIYERLSQSLAPSIFGSRDIKKAI
TCMLFGGSRKRLPDGLCRRGDINVLLLGDPGTAKSQLLKFVEKVAPIAVY
TSGKGSSAAGLTASVMKDPQTRNFVMEGGAMVLADGGVVCIDEFDKMRED
DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSIFGRWDDTKGEEN
IDFMPTILSRFDMIFIVKDIHDESRDITLAKHIINVHLSSNKSAPSEPAE
GEISLSTFKKYIHYCRTHCGPRLSEAAGEKLKSRYVLMRSGAGQQEKASD
KRLSIPITVRQLEAVIRISESLAKIRLQPFATDEHVNEALRLFQVSTLDA
AMTGSLAGAEGFTTEEDQETLNRIEKQLKRRFAIGSQVSEQNILQDFLRQ
KYEERTVMKVIHTMIRRGELQHRMQRKMLYRICASFLDH
BO13032.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcm5-PA | 733 | CG4082-PA | 1..733 | 1..733 | 3755 | 100 | Plus |
Mcm2-PA | 887 | CG7538-PA | 180..782 | 30..650 | 878 | 34.2 | Plus |
Mcm7-PA | 720 | CG4978-PA | 10..640 | 35..646 | 817 | 33 | Plus |
dpa-PB | 866 | CG1616-PB | 165..781 | 31..658 | 814 | 35.3 | Plus |
dpa-PA | 866 | CG1616-PA | 165..781 | 31..658 | 814 | 35.3 | Plus |