Clone BO13032 Report

Search the DGRC for BO13032

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptMcm5-RA
Protein status:BO13032.pep: Imported from assembly
Sequenced Size:2233

Clone Sequence Records

BO13032.5prime Sequence

712 bp (649 high quality bases) assembled on 2006-05-08

> BO13032.5prime
GAAGTTATCAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTT
CGGACAATTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAG
GCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAA
CTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTC
GCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACC
TTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGA
GGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGC
ACGAGGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAAT
CCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAA
GATCGCCGGAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGC
GGATGTCTATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAA
GTGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAAGTGCAACACGGA
GCAGGCGGGCAAACCCAAGTGCCCGCCTGGACCCCTTCTTCATCATGCCG
GACAAGTGCAAGTGCGTCGATTTTCCAGACCCTTAAGTTGCAAGAGCTCC
CCAACTTTGTGC

BO13032.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4082-PA 2202 Mcm5-RA 1..610 17..626 3025 99.8 Plus
CG4082-PA 2202 Mcm5-RA 610..656 627..673 235 100 Plus
CG4082-PA 2202 Mcm5-RA 654..694 672..712 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm5-RA 2452 CG4082-RA 142..835 17..712 3400 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10788870..10789412 168..712 2595 99.3 Plus
3R 32079331 3R 10788665..10788816 17..168 760 100 Plus
Blast to na_te.dros performed 2015-02-04 03:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1755..1793 114..152 114 76.9 Plus

BO13032.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:01 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm5-PA 1..694 17..712 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:55 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4082-PA 1..694 17..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:46 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 137..835 12..712 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:08 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 137..835 12..712 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:08 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10788660..10788816 12..168 98 -> Plus
3R 10788871..10789412 169..712 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:46 Download gff for BO13032.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6614382..6614538 12..168 98 -> Plus
arm_3R 6614593..6615134 169..712 99   Plus

BO13032.complete Sequence

2233 bp assembled on 2008-11-10

GenBank Submission: KX795449

> BO13032.complete
GAAGTTATCAGTCGACATGGAAGGCTTCGACGATGCGGGTGTGTTCTTTT
CGGACAATTTCGGCGGAGATAACCAGCAGGATGCGCAAATCAACTTGCAG
GCGGTAAAGAAGAAGTACAAGGAGTTCATCCGGACATTTAACGAGGAGAA
CTTTTTCTACAAATACCGTGACACCCTGAAGAGGAACTATCTTAATGGTC
GCTACTTCTTGGAGATTGAGATGGAGGATTTGGTGGGCTTCGATGAGACC
TTGGCTGACAAGCTGAACAAGCAGCCGACGGAGCATTTGGAAATCTTCGA
GGAGGCTGCCCGGGAGGTAGCCGACGAGATCACAGCTCCCCGGCCGGAGC
ACGAGGAACATATGCACGACATCCAGATTCTTCTGAGCTCCAATGCGAAT
CCCACCAACATACGACAGTTGAAGTCGGACTGCGTATCCAAGCTGGTTAA
GATCGCCGGAATCATTGTCGCAGCCTCAGGAATAAGTGCCAAGGCTACGC
GGATGTCTATCCAATGCCTGTCCTGCAGCACGGTCATACCGAATCTCAAA
GTGAATCCAGGTTTGGAGGGCTACGCCCTACCCAGGAAGTGCAACACGGA
GCAGGCGGGCAGACCCAAGTGCCCGCTGGACCCCTTCTTCATCATGCCGG
ACAAGTGCAAGTGCGTCGATTTCCAGACCCTTAAGTTGCAAGAGCTCCCC
GACTTTGTGCCACAGGGTGAGATTCCCCGCCACTTGCAGCTCTTCTGCGA
TCGCTCGCTCTGTGAACGCGTGGTGCCCGGCAATCGCGTGCTTATCCAGG
GCATATACTCCATTCGCAAGGTGGGCAAACCCTCGCGTCGGGATGGTCGC
GAGAAAGCCGTCGTTGGAGTCCGTGCTCCTTACATGAGGGTGGTGGGCAT
CACCGTCGACTCAGAGGGTGCGGGTGCCATCTCCCGATACAGCAACATCA
CATCCGATGAGGAGGAGCACTTCCGGCGAATGGCCGCCTCTGGGGACATC
TACGAACGTCTCTCACAGTCACTGGCGCCCAGCATCTTCGGCTCTCGGGA
TATCAAGAAAGCTATAACTTGTATGCTTTTTGGCGGGTCTCGTAAGCGTT
TACCGGATGGTCTGTGCCGTCGAGGCGACATTAACGTCTTACTGCTGGGA
GATCCTGGTACTGCCAAGTCACAGTTGTTAAAGTTTGTGGAGAAGGTGGC
ACCCATAGCAGTCTACACTTCGGGCAAAGGCTCCAGTGCGGCTGGTCTCA
CGGCTTCGGTTATGAAGGATCCTCAAACGCGTAACTTTGTCATGGAGGGT
GGAGCCATGGTGCTGGCCGATGGAGGCGTGGTTTGTATTGATGAGTTCGA
CAAAATGCGAGAGGATGATCGTGTGGCCATTCACGAGGCCATGGAACAGC
AGACAATATCCATTGCCAAAGCCGGCATCACGACCACCTTGAACTCACGC
TGTTCGGTCTTGGCAGCTGCCAACTCCATTTTCGGTCGATGGGACGACAC
CAAGGGCGAGGAGAACATTGACTTTATGCCCACAATTCTCTCCCGTTTCG
ACATGATTTTCATTGTAAAGGATATTCACGATGAGTCGCGGGACATTACG
CTGGCCAAGCACATCATCAACGTGCATCTGAGCTCTAACAAGTCAGCGCC
TTCAGAGCCGGCTGAGGGTGAGATATCGCTGTCGACGTTCAAGAAGTATA
TTCACTACTGCCGAACTCATTGCGGTCCGCGCCTGAGCGAAGCTGCCGGC
GAGAAGCTAAAGAGCCGCTACGTGCTTATGCGCAGTGGAGCCGGCCAGCA
GGAGAAGGCATCTGACAAGCGGCTAAGCATTCCCATCACTGTGCGTCAGT
TGGAGGCTGTCATCCGCATTTCGGAGTCGCTGGCAAAGATTCGTTTGCAA
CCGTTCGCCACAGATGAGCACGTGAACGAAGCACTTCGACTTTTCCAAGT
GTCTACCCTTGATGCTGCGATGACTGGCAGCTTGGCTGGAGCCGAAGGAT
TCACGACCGAGGAGGACCAGGAAACACTCAACCGCATCGAAAAGCAATTG
AAACGTCGCTTTGCAATTGGATCTCAAGTATCGGAGCAGAATATCTTACA
GGACTTTTTGCGTCAGAAATACGAAGAACGCACGGTAATGAAGGTAATTC
ATACCATGATCCGACGTGGAGAGCTGCAGCACCGGATGCAACGGAAGATG
CTCTATCGAATTTGCGCAAGCTTTCTAGACCAT

BO13032.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm5-RA 2202 CG4082-PA 1..2199 17..2215 10995 100 Plus
Mcm7-RA 2163 CG4978-PA 1330..1463 1337..1470 235 78.4 Plus
Mcm6-RA 2454 CG4039-PA 1387..1430 1373..1416 190 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm5-RA 2452 CG4082-RA 142..2340 17..2215 10995 100 Plus
Mcm7-RA 2451 CG4978-RA 1483..1616 1337..1470 235 78.4 Plus
Mcm6-RA 2790 CG4039-RA 1506..1549 1373..1416 190 95.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10788870..10789981 168..1279 5560 100 Plus
3R 32079331 3R 10790039..10790862 1279..2102 4120 100 Plus
3R 32079331 3R 10788665..10788816 17..168 760 100 Plus
3R 32079331 3R 10790923..10791038 2100..2215 580 100 Plus
3L 28110227 3L 8893280..8893413 1337..1470 235 78.4 Plus
X 23542271 X 6675892..6675935 1373..1416 190 95.5 Plus
Blast to na_te.dros performed 2014-11-27 20:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
R1-2 3216 R1-2 R1-2 3216bp 1755..1793 114..152 114 76.9 Plus

BO13032.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:21 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 133..2339 12..2219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:27 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 142..2340 17..2217 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:07 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 138..2336 17..2217 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:30 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
Mcm5-RA 142..2340 17..2217 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:30 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10788665..10788816 17..168 100 -> Plus
3R 10788871..10789981 169..1279 100 -> Plus
3R 10790040..10790861 1280..2101 100 -> Plus
3R 10790925..10791038 2102..2217 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:27 Download gff for BO13032.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6614387..6614538 17..168 100 -> Plus
arm_3R 6614593..6615703 169..1279 100 -> Plus
arm_3R 6615762..6616583 1280..2101 100 -> Plus
arm_3R 6616647..6616760 2102..2217 98   Plus

BO13032.pep Sequence

Translation from 16 to 2233

> BO13032.pep
MEGFDDAGVFFSDNFGGDNQQDAQINLQAVKKKYKEFIRTFNEENFFYKY
RDTLKRNYLNGRYFLEIEMEDLVGFDETLADKLNKQPTEHLEIFEEAARE
VADEITAPRPEHEEHMHDIQILLSSNANPTNIRQLKSDCVSKLVKIAGII
VAASGISAKATRMSIQCLSCSTVIPNLKVNPGLEGYALPRKCNTEQAGRP
KCPLDPFFIMPDKCKCVDFQTLKLQELPDFVPQGEIPRHLQLFCDRSLCE
RVVPGNRVLIQGIYSIRKVGKPSRRDGREKAVVGVRAPYMRVVGITVDSE
GAGAISRYSNITSDEEEHFRRMAASGDIYERLSQSLAPSIFGSRDIKKAI
TCMLFGGSRKRLPDGLCRRGDINVLLLGDPGTAKSQLLKFVEKVAPIAVY
TSGKGSSAAGLTASVMKDPQTRNFVMEGGAMVLADGGVVCIDEFDKMRED
DRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSIFGRWDDTKGEEN
IDFMPTILSRFDMIFIVKDIHDESRDITLAKHIINVHLSSNKSAPSEPAE
GEISLSTFKKYIHYCRTHCGPRLSEAAGEKLKSRYVLMRSGAGQQEKASD
KRLSIPITVRQLEAVIRISESLAKIRLQPFATDEHVNEALRLFQVSTLDA
AMTGSLAGAEGFTTEEDQETLNRIEKQLKRRFAIGSQVSEQNILQDFLRQ
KYEERTVMKVIHTMIRRGELQHRMQRKMLYRICASFLDH

BO13032.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mcm5-PA 733 CG4082-PA 1..733 1..733 3755 100 Plus
Mcm2-PA 887 CG7538-PA 180..782 30..650 878 34.2 Plus
Mcm7-PA 720 CG4978-PA 10..640 35..646 817 33 Plus
dpa-PB 866 CG1616-PB 165..781 31..658 814 35.3 Plus
dpa-PA 866 CG1616-PA 165..781 31..658 814 35.3 Plus