Clone BO13033 Report

Search the DGRC for BO13033

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG15173-RA
Protein status:BO13033.pep:
Sequenced Size:1141

Clone Sequence Records

BO13033.5prime Sequence

580 bp (519 high quality bases) assembled on 2006-05-08

> BO13033.5prime
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGG
ACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAG
ATACTTTCACATCAGCTCCAAGATAGCACA

BO13033.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15173-PA 1110 CG15173-RA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-RA 1440 CG15173-RA 244..808 15..580 2805 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19044370..19044905 550..15 2680 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:33:24 has no hits.

BO13033.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:02 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15173-PA 1..562 17..579 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:57 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15173-PA 1..562 17..579 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:10 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 244..807 15..579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:52 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 244..807 15..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:52 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19044290..19044317 551..579 96 <- Minus
2L 19044370..19044905 15..550 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:10 Download gff for BO13033.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19044290..19044317 551..579 96 <- Minus
arm_2L 19044370..19044905 15..550 100   Minus

BO13033.complete Sequence

1141 bp assembled on 2008-01-17

GenBank Submission: FJ632655

> BO13033.complete
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGG
ACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAG
ATACTTCACATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAGGGGA
TCTGGAAAAGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTGGCTA
AGCTACTGGAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTATGGC
TTGACAAAGAATTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAATACCT
GGAGGCTAAAAACCTCTTTAAGGAGGCCTTCGACACGCTCATAAATGTTT
ATGGTGCCGTTAACGACGCCTCTGTAACCATCCTAAATAACATCAGTGTG
GCGTACGTAAACCTGGAAAAGTACGCCGAGGCAAGGGAGACCCTTTTGGA
GGCCATGGAGCTGACTAAGGAGCTAAAGGATGCCACCCAGGAAGGCATTC
TGCAGGCAAATCTGGGTTTGGTGTATCTTCGCGAGGGCCTGATGTCGCAG
GCGGAGAACGCTTGCCGACTGGCGTGGAAACTGGGAAAGCAACACCAGAA
TCCCGATGCCGTAGAGCAGGCCGAGTATTGTCTCAACGAGATAAAGACAA
CCCTGAATGGAGAGAAGCGCCAGGCAAGCTTTCTAGACCAT

BO13033.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-RA 1110 CG15173-PA 1..1107 17..1123 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-RA 1440 CG15173-RA 244..1352 15..1123 5545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19044370..19044905 550..15 2680 100 Minus
2L 23513712 2L 19043623..19043883 1123..863 1305 100 Minus
2L 23513712 2L 19044152..19044319 716..549 840 100 Minus
2L 23513712 2L 19043936..19044084 862..714 745 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:36:27 has no hits.

BO13033.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:26 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 1..1110 17..1126 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:41 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 249..1350 22..1125 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:20 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 251..1352 22..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:26 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
CG15173-RA 242..1358 15..1131 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:12 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
Ttc19-RA 251..1352 22..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:12 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19043936..19044083 715..862 100 <- Minus
2L 19044154..19044317 551..714 100 <- Minus
2L 19043620..19043883 863..1125 99 <- Minus
2L 19044370..19044898 22..550 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:20 Download gff for BO13033.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19043620..19043883 863..1125 99 <- Minus
arm_2L 19043936..19044083 715..862 100 <- Minus
arm_2L 19044154..19044317 551..714 100 <- Minus
arm_2L 19044370..19044898 22..550 100   Minus

BO13033.pep Sequence

Translation from 16 to 1141

> BO13033.pep
MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN
AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT
IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER
EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF
QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL
FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT
KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE
QAEYCLNEIKTTLNGEKRQASFLDH

BO13033.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Ttc19-PA 369 CG15173-PA 1..369 1..369 1907 100 Plus