Clone Sequence Records
BO13033.5prime Sequence
580 bp (519 high quality bases) assembled on 2006-05-08
> BO13033.5prime
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGG
ACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAG
ATACTTTCACATCAGCTCCAAGATAGCACA
BO13033.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15173-PA | 1110 | CG15173-RA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ttc19-RA | 1440 | CG15173-RA | 244..808 | 15..580 | 2805 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19044370..19044905 | 550..15 | 2680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:33:24 has no hits.
BO13033.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:02 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15173-PA | 1..562 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:34:57 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15173-PA | 1..562 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:10 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ttc19-RA | 244..807 | 15..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:52 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ttc19-RA | 244..807 | 15..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:52 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19044290..19044317 | 551..579 | 96 | <- | Minus |
2L | 19044370..19044905 | 15..550 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:10 Download gff for
BO13033.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19044290..19044317 | 551..579 | 96 | <- | Minus |
arm_2L | 19044370..19044905 | 15..550 | 100 | | Minus |
BO13033.complete Sequence
1141 bp assembled on 2008-01-17
GenBank Submission: FJ632655
> BO13033.complete
GAAGTTATCAGTCGACATGTTAGTGAGAAATATTTGCAAGTTTACGCAAG
TTATGGGCAGGTTCCGCGTTGTCGTGAATCCCAGAGATTACTGTCATCTT
GCGCCGCTGAAGAGAAGCCGTTATCACCAACGGTCAGAATTCGGATGTCG
ACCGCTGTGCTCCAATGCTGCGGGCTACGAGGTGTCCTGGGCAGCTCCGC
CCGCTTCTGGCTCTTCCGGTGGAATGTTTTGGGCATTTTCCGCTGCTTTC
ACTCTGAATCTGTTTGGTGGCGCCGACGAAAAAGAGGAAACTCCGGAGGA
AAAACTGATCAAGACCATCAAACGATCAATCCTGTGCATTCAGAGGGAAC
AGTACGACAAGGCCGAGCAAATGCTTCACCTGGCTCTGCGAATGGCGCAG
GATATTCAGAGCAAGGACGGCATCACATATGTGTTTGATCTGATGGCCAA
TTTGGCCATGGAACGCGAGCAGTTTAAGAAGGCGGAGAAGATATTCACGG
ACGTTATGAAACGGCTTTTTGCCGAGGGTCACACCGAAGAGAGTCCCAAG
ATACTTCACATCAGCTCCAAGATAGCACACATGTCTCAGCTGCAAGGGGA
TCTGGAAAAGAGCTTTCAAGGGTTCACTTGGACCTTGCAGCAGTTGGCTA
AGCTACTGGAGAAAATGCCCGACGACAAGGACATACTGGAGCTGTATGGC
TTGACAAAGAATTGGTTCGGGCAGCTGCTGATGAAGCAGGGAAAATACCT
GGAGGCTAAAAACCTCTTTAAGGAGGCCTTCGACACGCTCATAAATGTTT
ATGGTGCCGTTAACGACGCCTCTGTAACCATCCTAAATAACATCAGTGTG
GCGTACGTAAACCTGGAAAAGTACGCCGAGGCAAGGGAGACCCTTTTGGA
GGCCATGGAGCTGACTAAGGAGCTAAAGGATGCCACCCAGGAAGGCATTC
TGCAGGCAAATCTGGGTTTGGTGTATCTTCGCGAGGGCCTGATGTCGCAG
GCGGAGAACGCTTGCCGACTGGCGTGGAAACTGGGAAAGCAACACCAGAA
TCCCGATGCCGTAGAGCAGGCCGAGTATTGTCTCAACGAGATAAAGACAA
CCCTGAATGGAGAGAAGCGCCAGGCAAGCTTTCTAGACCAT
BO13033.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ttc19-RA | 1110 | CG15173-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ttc19-RA | 1440 | CG15173-RA | 244..1352 | 15..1123 | 5545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19044370..19044905 | 550..15 | 2680 | 100 | Minus |
2L | 23513712 | 2L | 19043623..19043883 | 1123..863 | 1305 | 100 | Minus |
2L | 23513712 | 2L | 19044152..19044319 | 716..549 | 840 | 100 | Minus |
2L | 23513712 | 2L | 19043936..19044084 | 862..714 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:36:27 has no hits.
BO13033.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:26 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15173-RA | 1..1110 | 17..1126 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:41 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15173-RA | 249..1350 | 22..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:20 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ttc19-RA | 251..1352 | 22..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:26 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15173-RA | 242..1358 | 15..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:12 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ttc19-RA | 251..1352 | 22..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:12 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19043936..19044083 | 715..862 | 100 | <- | Minus |
2L | 19044154..19044317 | 551..714 | 100 | <- | Minus |
2L | 19043620..19043883 | 863..1125 | 99 | <- | Minus |
2L | 19044370..19044898 | 22..550 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:20 Download gff for
BO13033.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19043620..19043883 | 863..1125 | 99 | <- | Minus |
arm_2L | 19043936..19044083 | 715..862 | 100 | <- | Minus |
arm_2L | 19044154..19044317 | 551..714 | 100 | <- | Minus |
arm_2L | 19044370..19044898 | 22..550 | 100 | | Minus |
BO13033.pep Sequence
Translation from 16 to 1141
> BO13033.pep
MLVRNICKFTQVMGRFRVVVNPRDYCHLAPLKRSRYHQRSEFGCRPLCSN
AAGYEVSWAAPPASGSSGGMFWAFSAAFTLNLFGGADEKEETPEEKLIKT
IKRSILCIQREQYDKAEQMLHLALRMAQDIQSKDGITYVFDLMANLAMER
EQFKKAEKIFTDVMKRLFAEGHTEESPKILHISSKIAHMSQLQGDLEKSF
QGFTWTLQQLAKLLEKMPDDKDILELYGLTKNWFGQLLMKQGKYLEAKNL
FKEAFDTLINVYGAVNDASVTILNNISVAYVNLEKYAEARETLLEAMELT
KELKDATQEGILQANLGLVYLREGLMSQAENACRLAWKLGKQHQNPDAVE
QAEYCLNEIKTTLNGEKRQASFLDH
BO13033.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ttc19-PA | 369 | CG15173-PA | 1..369 | 1..369 | 1907 | 100 | Plus |