Clone Sequence Records
BO13038.3prime Sequence
744 bp (622 high quality bases) assembled on 2006-05-08
> BO13038.3prime
ATGGTCTAGAAAGCTTGCACAGCATTTATTTTGGTCCAGCTTAGGGCTGG
TCGGTCTGGCCAGCAGAACCACGTTTTCCAAAGTCACATCCCTGGGAACA
TAGAACTTAAGTTCTGCTTGATATCCGTGGGATCGTAGATGCTCCAGTCG
TCCATAATCCAGAACCCGCTTGCACTGTTGGCCAATTTGTTCGCGCTCCT
GGCGAGTTAGACGCTGCGTGTTCGTCTCGGTGAGCTGAAAGTCAGCCGAT
TCCATGGCCTTACGCCGCTCTCGGCTTAAGCCCGTGCCACAAACTGCCCA
ACTGACCATTTTGGTTAGGATAACGAACTCCCGTGGTCCAATTCCAGCTT
CCTGAAGAAACTTGCGTCCCACGTAGGAGCGCCAGGAGCAGCGATGATGA
CAACACAGGGCGATGAGAACGTAGTCCGAGCTGGCATTTCCATCACCGAG
TATACATCTCAGGGTCAAGTCTGTAGCTGCTCCACAGAGGTGCTTCGAAA
AAGCCACCGTTCGTTGGGTTTTCTTTAGCTCCGGCAGAGCAGAAAGCTTA
AGATCAGCGATATCAGCACGGATACGTTGCACCACCTCCCTGTTGGCCAA
CTTGTTGTCCTTCTTGTGCCGCAGGGACATTTCGATCGATGAGGACCACC
TGTGAGTGACTCAACTTCTGTTCCTGCAATACGGTGGCCAAAAAGTAGGC
CAATTGTCCCTTTCCGGCTCCCAATTCTATATAGCTCGTGTGAT
BO13038.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 1326 | CG18048-RA | 711..1323 | 631..19 | 3065 | 100 | Minus |
| CG18048-PA | 1326 | CG18048-RA | 599..712 | 744..631 | 545 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 681..1405 | 744..19 | 3590 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346791..6347515 | 744..19 | 3565 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-06 12:33:36 has no hits.
BO13038.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:10 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 599..1326 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:06 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 599..1326 | 16..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 07:01:34 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 681..1409 | 17..744 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:41:52 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 681..1409 | 17..744 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:41:52 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346791..6347521 | 11..744 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 07:01:34 Download gff for
BO13038.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2172513..2173243 | 11..744 | 99 | | Minus |
BO13038.5prime Sequence
690 bp (655 high quality bases) assembled on 2006-05-08
> BO13038.5prime
GAAGTTATCAGTCGACATGGAACCTGTGAAAGAGACGATGACCACTGTCA
AGGCGGAGAAGCCGGTAACCACCACTTGCTCCTACTGGGTGTTACGCAAA
AAGCGCCGCTGCAAGATGACTGCAAACAAGGGCAGTGAGTTTTGTGGAGC
CCATGCCTCATCGGCAGCCACCACTGCAACTTGCGATGAAAAAGCTAGAG
AAGATTCCTTCCAGGAACGTATTCCCTGCCCGCTTGATCACAAACATACC
GTGTTTAAAAGAAAACTAGCCAAACACTTGACCATTTGCAATGCCAGGGA
TCAGGAAAGTTCACTGCCCTACATTGTAAAAGGAGTGAATTCTGGAGACA
ATCTTAAGGAAACAGACGAAGATTTGAACAAATTCAATCAAATAAAACTG
CACGAACTGGCGGATGAAGAGTTCTACAGTCTGATCGACAAAGTTAAGAA
TCTGTATGACAAGCACATCAATTCCAGCATACAGGAACTGCAGCTGGAGC
ACGAATCCCTAAAGGAGGAACTTAGTCGCAAGGACTACGGCCAGGAAACG
CTACGCCAGCTCACCCAGACCACTAGCTTGCTGGGCATCCTGGAACACGA
TCACCAGTTGATGGATCACACGAGCTATATAGAATTCGGAGCCCGGAAGG
GACAATTGGCCTACTTTTTGGCCACCGTATTGCAGGAACA
BO13038.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 1326 | CG18048-RA | 1..674 | 17..690 | 3320 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 83..756 | 17..690 | 3340 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346193..6346866 | 17..690 | 3340 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:19:37 has no hits.
BO13038.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:11 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 1..673 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:07 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-PA | 1..673 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:45 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 80..755 | 13..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:10 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 80..755 | 13..689 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:10 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346190..6346865 | 13..689 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:45 Download gff for
BO13038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2171912..2172587 | 13..689 | 99 | | Plus |
BO13038.complete Sequence
1357 bp assembled on 2008-01-17
GenBank Submission: FJ632656
> BO13038.complete
GAAGTTATCAGTCGACATGGAACCTGTGAAAGAGACGATGACCACTGTCA
AGGCGGAGAAGCCGGTAACCACCACTTGCTCCTACTGGGTGTTACGCAAA
AAGCGCCGCTGCAAGATGACTGCAAACAAGGGCAGTGAGTTTTGTGGAGC
CCATGCCTCATCGGCAGCCACCACTGCAACTTGCGATGAAAAAGCTAGAG
AAGATTCCTTCCAGGAACGTATTCCCTGCCCGCTTGATCACAAACATACC
GTGTTTAAAAGAAAACTAGCCAAACACTTGACCATTTGCAATGCCAGGGA
TCAGGAAAGTTCACTGCCCTACATTGTAAAAGGAGTGAATTCTGGAGACA
ATCTTAAGGAAACAGACGAAGATTTGAACAAATTCAATCAAATAAAACTG
CACGAACTGGCGGATGAAGAGTTCTACAGTCTGATCGACAAAGTTAAGAA
TCTGTATGACAAGCACATCAATTCCAGCATACAGGAACTGCAGCTGGAGC
ACGAATCCCTAAAGGAGGAACTTAGTCGCAAGGACTACGGCCAGGAAACG
CTACGCCAGCTCACCCAGACCACTAGCTTGCTGGGCATCCTGGAACACGA
TCACCAGTTGATGGATCACACGAGCTATATAGAATTCGGAGCCGGAAAGG
GACAATTGGCCTACTTTTTGGCCACCGTATTGCAGGAACAGAAGTTGAGT
CACTCACAGGTGGTCCTCATCGATCGAATGTCCCTGCGGCACAAGAAGGA
CAACAAGTTGGCCAACAGGGAGGTGGTGCAACGTATCCGTGCTGATATCG
CTGATCTTAAGCTTTCTGCTCTGCCGGAGCTAAAGAAAACCCAACGAACG
GTGGCTTTTTCGAAGCACCTCTGTGGAGCAGCTACAGACTTGACCCTGAG
ATGTATACTCGGTGATGGAAATGCCAGCTCGGACTACGTTCTCATCGCCC
TGTGTTGTCATCATCGCTGCTCCTGGCGCTCCTACGTGGGACGCAAGTTT
CTTCAGGAAGCTGGAATTGGACCACGGGAGTTCGTTATCCTAACCAAAAT
GGTCAGTTGGGCAGTTTGTGGCACGGGCTTAAGCCGAGAGCGGCGTAAGG
CCATGGAATCGGCTGACTTTCAGCTCACCGAGACGAACACGCAGCGTCTA
ACTCGCCAGGAGCGCGAACAAATTGGCCAACAGTGCAAGCGGGTTCTGGA
TTATGGACGACTGGAGCATCTACGATCCCACGGATATCAAGCAGAACTTA
AGTTCTATGTTCCCAGGGATGTGACTTTGGAAAACGTGGTTCTGCTGGCC
AGACCGACCAGCCCTAAGCTGGACCAAAATAAATGCTGTGCAAGCTTTCT
AGACCAT
BO13038.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1326 | CG18048-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-RA | 1409 | CG18048-RA | 83..1405 | 17..1339 | 6615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6346193..6347515 | 17..1339 | 6615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:01:31 has no hits.
BO13038.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:27 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 1..1326 | 17..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:31:15 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 78..1400 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:32 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 83..1405 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:28 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 75..1403 | 13..1342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:09 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18048-RA | 83..1405 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:09 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6346193..6347515 | 17..1341 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:32 Download gff for
BO13038.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2171915..2173237 | 17..1341 | 99 | | Plus |
BO13038.pep Sequence
Translation from 16 to 1357
> BO13038.pep
MEPVKETMTTVKAEKPVTTTCSYWVLRKKRRCKMTANKGSEFCGAHASSA
ATTATCDEKAREDSFQERIPCPLDHKHTVFKRKLAKHLTICNARDQESSL
PYIVKGVNSGDNLKETDEDLNKFNQIKLHELADEEFYSLIDKVKNLYDKH
INSSIQELQLEHESLKEELSRKDYGQETLRQLTQTTSLLGILEHDHQLMD
HTSYIEFGAGKGQLAYFLATVLQEQKLSHSQVVLIDRMSLRHKKDNKLAN
REVVQRIRADIADLKLSALPELKKTQRTVAFSKHLCGAATDLTLRCILGD
GNASSDYVLIALCCHHRCSWRSYVGRKFLQEAGIGPREFVILTKMVSWAV
CGTGLSRERRKAMESADFQLTETNTQRLTRQEREQIGQQCKRVLDYGRLE
HLRSHGYQAELKFYVPRDVTLENVVLLARPTSPKLDQNKCCASFLDH
BO13038.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18048-PA | 441 | CG18048-PA | 1..441 | 1..441 | 2298 | 100 | Plus |
