Clone Sequence Records
BO13040.5prime Sequence
673 bp (637 high quality bases) assembled on 2006-05-08
> BO13040.5prime
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAACGACACT
BO13040.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-PA | 915 | CG14615-RA | 1..657 | 17..673 | 3260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 1826 | CG14615-RB | 169..825 | 17..673 | 3270 | 99.8 | Plus |
CG14615-RA | 1356 | CG14615-RA | 257..913 | 17..673 | 3270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22448579..22449235 | 673..17 | 3270 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:19:30 has no hits.
BO13040.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:12 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-PA | 1..657 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:08 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-PA | 1..657 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:58 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..913 | 17..673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:09 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..913 | 17..673 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:09 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22448579..22449235 | 17..673 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:58 Download gff for
BO13040.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21850415..21851071 | 17..673 | 99 | | Minus |
BO13040.complete Sequence
946 bp assembled on 2008-01-17
GenBank Submission: FJ632657
> BO13040.complete
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAG
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAAGGCGGAGCG
TAGAGGACTAGGTGGCCTCCTAGCCGCTGCGATGAGCCGAGAAATTGCTC
GGGGCGAGGAGATCACCCTAACGGCCTGGATTGTCGCTACTAACTGGCGG
TCGGAGGCGCTGCTCAAGCGGATCGGGTACCAGAAAGATCTGGTCAATGA
GTGGATTAAGCTGGTACCGAATTCTTCAGCAAGCTTTCTAGACCAT
BO13040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RB | 915 | CG14615-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
CG14615-RA | 915 | CG14615-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-RA | 1356 | CG14615-RA | 257..1168 | 17..928 | 4560 | 100 | Plus |
CG14615-RB | 1826 | CG14615-RB | 169..1080 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 22448532..22449235 | 720..17 | 3520 | 100 | Minus |
X | 23542271 | X | 22447929..22448137 | 928..720 | 1045 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:05:40 has no hits.
BO13040.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:28 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:29 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1168 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:34 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1168 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:29 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1168 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:51 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14615-RA | 257..1168 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:51 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 22447927..22448136 | 721..930 | 99 | <- | Minus |
X | 22448532..22449235 | 17..720 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:34 Download gff for
BO13040.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21849763..21849972 | 721..930 | 99 | <- | Minus |
arm_X | 21850368..21851071 | 17..720 | 100 | | Minus |
BO13040.pep Sequence
Translation from 16 to 946
> BO13040.pep
MSSDKNGDILRPLSDSEVDELLDLYKVKFGIRNFHYLLLYNQRKWDRQLS
EAQIPRNDLNHISLRKQFYTHRRGNFRTWGTYVSLHRDIVQSVSFFSWQP
DGAAELWECLEQTQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPR
QCFGMVLSHEDAFCAKVPDLPSEFEIRRLRAEDAAMVHDSWPNKGEGSLT
YLQALVRFNKSLGICRSDTGELIAWIFQNDFSGLGMLQVLPKAERRGLGG
LLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEWIKLV
PNSSASFLDH
BO13040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14615-PB | 304 | CG14615-PB | 1..304 | 1..304 | 1600 | 100 | Plus |
CG14615-PA | 304 | CG14615-PA | 1..304 | 1..304 | 1600 | 100 | Plus |
CG17681-PA | 293 | CG17681-PA | 5..267 | 7..289 | 216 | 25.1 | Plus |
CG12560-PB | 278 | CG12560-PB | 152..269 | 170..289 | 194 | 32.2 | Plus |
CG5783-PA | 287 | CG5783-PA | 92..276 | 115..301 | 193 | 27.5 | Plus |