Clone BO13040 Report

Search the DGRC for BO13040

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG14615-RA
Protein status:BO13040.pep:
Sequenced Size:946

Clone Sequence Records

BO13040.5prime Sequence

673 bp (637 high quality bases) assembled on 2006-05-08

> BO13040.5prime
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAACGACACT

BO13040.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-PA 915 CG14615-RA 1..657 17..673 3260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 1826 CG14615-RB 169..825 17..673 3270 99.8 Plus
CG14615-RA 1356 CG14615-RA 257..913 17..673 3270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22448579..22449235 673..17 3270 99.8 Minus
Blast to na_te.dros performed on 2015-02-13 02:19:30 has no hits.

BO13040.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:12 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:08 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-PA 1..657 17..673 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:58 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..913 17..673 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:08:09 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..913 17..673 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:09 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
X 22448579..22449235 17..673 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:58 Download gff for BO13040.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21850415..21851071 17..673 99   Minus

BO13040.complete Sequence

946 bp assembled on 2008-01-17

GenBank Submission: FJ632657

> BO13040.complete
GAAGTTATCAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGC
CACTTAGCGATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAA
TTCGGTATAAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATG
GGACCGCCAGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACA
TTTCTCTGAGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACG
TGGGGCACCTATGTGAGCCTTCATCGGGACATCGTGCAGAGCGTCTCCTT
CTTCAGCTGGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGC
AAACGCAGCTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGAT
CTGGGATTTTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCAC
CGCCATTCAACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATG
CCTTTTGTGCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGA
TTGAGGGCTGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGG
TGAAGGCTCACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCT
TGGGCATCTGCCGAAGCGACACTGGGGAACTGATTGCCTGGATCTTTCAG
AACGACTTTTCCGGACTGGGCATGCTGCAAGTGCTGCCCAAGGCGGAGCG
TAGAGGACTAGGTGGCCTCCTAGCCGCTGCGATGAGCCGAGAAATTGCTC
GGGGCGAGGAGATCACCCTAACGGCCTGGATTGTCGCTACTAACTGGCGG
TCGGAGGCGCTGCTCAAGCGGATCGGGTACCAGAAAGATCTGGTCAATGA
GTGGATTAAGCTGGTACCGAATTCTTCAGCAAGCTTTCTAGACCAT

BO13040.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RB 915 CG14615-PB 1..912 17..928 4560 100 Plus
CG14615-RA 915 CG14615-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-RA 1356 CG14615-RA 257..1168 17..928 4560 100 Plus
CG14615-RB 1826 CG14615-RB 169..1080 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22448532..22449235 720..17 3520 100 Minus
X 23542271 X 22447929..22448137 928..720 1045 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:05:40 has no hits.

BO13040.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:28 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 1..915 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:29 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1168 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:34 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1168 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:29 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1168 17..928 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:51 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
CG14615-RA 257..1168 17..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:51 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
X 22447927..22448136 721..930 99 <- Minus
X 22448532..22449235 17..720 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:34 Download gff for BO13040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21849763..21849972 721..930 99 <- Minus
arm_X 21850368..21851071 17..720 100   Minus

BO13040.pep Sequence

Translation from 16 to 946

> BO13040.pep
MSSDKNGDILRPLSDSEVDELLDLYKVKFGIRNFHYLLLYNQRKWDRQLS
EAQIPRNDLNHISLRKQFYTHRRGNFRTWGTYVSLHRDIVQSVSFFSWQP
DGAAELWECLEQTQLIEWTQGALLTNVDLGFCNRVKELAVSRGVTAIQPR
QCFGMVLSHEDAFCAKVPDLPSEFEIRRLRAEDAAMVHDSWPNKGEGSLT
YLQALVRFNKSLGICRSDTGELIAWIFQNDFSGLGMLQVLPKAERRGLGG
LLAAAMSREIARGEEITLTAWIVATNWRSEALLKRIGYQKDLVNEWIKLV
PNSSASFLDH

BO13040.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14615-PB 304 CG14615-PB 1..304 1..304 1600 100 Plus
CG14615-PA 304 CG14615-PA 1..304 1..304 1600 100 Plus
CG17681-PA 293 CG17681-PA 5..267 7..289 216 25.1 Plus
CG12560-PB 278 CG12560-PB 152..269 170..289 194 32.2 Plus
CG5783-PA 287 CG5783-PA 92..276 115..301 193 27.5 Plus