Clone BO13041 Report

Search the DGRC for BO13041

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG14253-RB
Protein status:BO13041.pep:
Sequenced Size:1231

Clone Sequence Records

BO13041.3prime Sequence

681 bp (620 high quality bases) assembled on 2006-05-08

> BO13041.3prime
ATGGTCTAGAAAGCTTGCGGCCAAGCTAGTTGGCGGAATCTGGGACTGGC
TTTGCACCTCCAGAAGTGGAACTGCAAGATCGCTCAAGTGCGACCTGGCA
CTCTGATAGTCATCTTCCGATCTCGGACGCATCTGCGTCTGGTGCTGTGG
ACTGCTCTGCTGCACTACCTCAGTGTATACCGGTTGAATCTGAACTTGTG
CAGAGCCATTTCGTCCGCTATCGAACATATCATCAATGTCCACCAGCTGG
AAGTCCACGGCGAATACATAACGCAGCACCATGACCAGCAGAGCCACTAT
CCACAGTACCATTCCGATCAAGTAGCTGAAGCGGAAGAGCTCCAGATAAG
TATCATGGGATACGTTGTGGTCGTGAATGATGGGACGCAACAGGGCGATG
GCATCGCCGCAGGTGATGGCAGTGGGATCTGTGAGATTCTCCCTCAGTTG
GCCACAGAGGTGCTTAAGGTGGCCATTGGTCAGGATTGTGTAGATTACAC
TGCACAAACTCATCACCGAGAAAATAACGATGGAGGGCACCACAATGCGC
CACGGCTTCGGCAAAACTGAGCTCTTTTTGCTGCCTGGTCTGGTAAATCA
AACACATGGCTGTCCAGATAATGGCCCCGATCTCTGATATGAGGGGAAAT
ACGTAGACAAACTGAGCTCCTGGTCCTCTTT

BO13041.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PC 1173 CG14253-RC 602..1170 587..19 2820 99.8 Minus
CG14253-PE 1173 CG14253-RE 602..1170 587..19 2820 99.8 Minus
CG14253-PD 1173 CG14253-RD 602..1170 587..19 2820 99.8 Minus
CG14253-PA 1173 CG14253-RA 602..1170 587..19 2820 99.8 Minus
CG14253-PB 1200 CG14253-RB 629..1197 587..19 2820 99.8 Minus
CG14253-PC 1173 CG14253-RC 509..602 681..588 445 98.9 Minus
CG14253-PE 1173 CG14253-RE 509..602 681..588 445 98.9 Minus
CG14253-PD 1173 CG14253-RD 509..602 681..588 445 98.9 Minus
CG14253-PA 1173 CG14253-RA 509..602 681..588 445 98.9 Minus
CG14253-PB 1200 CG14253-RB 536..629 681..588 445 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RF 2286 CG14253-RF 1173..1834 681..19 3260 99.5 Minus
CG14253-RB 1886 CG14253-RB 773..1434 681..19 3260 99.5 Minus
CG14253-RA 1981 CG14253-RA 868..1529 681..19 3260 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985254 568..19 2735 99.8 Minus
3R 32079331 3R 26984525..26984636 681..569 500 98.2 Minus
Blast to na_te.dros performed on 2015-02-12 12:36:13 has no hits.

BO13041.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:13 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PD 509..1173 15..681 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:10 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PE 509..1173 15..681 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:16:59 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RA 868..1532 15..681 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:05 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RA 868..1532 15..681 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:05 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26984525..26984636 569..681 98 -> Minus
3R 26984705..26985257 15..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:16:59 Download gff for BO13041.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22810247..22810358 569..681 98 -> Minus
arm_3R 22810427..22810979 15..568 99   Minus

BO13041.5prime Sequence

730 bp (653 high quality bases) assembled on 2006-05-08

> BO13041.5prime
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAAAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGC

BO13041.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 1200 CG14253-RB 1..714 17..730 3545 99.8 Plus
CG14253-PC 1173 CG14253-RC 64..687 107..730 3095 99.8 Plus
CG14253-PE 1173 CG14253-RE 64..687 107..730 3095 99.8 Plus
CG14253-PD 1173 CG14253-RD 64..687 107..730 3095 99.8 Plus
CG14253-PA 1173 CG14253-RA 64..687 107..730 3095 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1886 CG14253-RB 238..951 17..730 3555 99.9 Plus
CG14253-RF 2286 CG14253-RF 728..1351 107..730 3105 99.8 Plus
CG14253-RA 1981 CG14253-RA 423..1046 107..730 3105 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26983963..26984217 108..362 1275 100 Plus
3R 32079331 3R 26984276..26984434 363..521 795 100 Plus
3R 32079331 3R 26984490..26984636 517..663 705 98.6 Plus
3R 32079331 3R 26978778..26978868 17..107 455 100 Plus
3R 32079331 3R 26984705..26984771 664..730 335 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:14:54 has no hits.

BO13041.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:14 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PB 1..714 17..730 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:12 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-PB 1..714 17..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:25 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 231..951 7..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:43 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 231..951 7..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:43 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26978771..26978868 7..107 96 -> Plus
3R 26983963..26984217 108..362 100 -> Plus
3R 26984276..26984434 363..521 100 -> Plus
3R 26984495..26984636 522..663 99 -> Plus
3R 26984705..26984771 664..730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:25 Download gff for BO13041.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22804493..22804590 7..107 96 -> Plus
arm_3R 22809685..22809939 108..362 100 -> Plus
arm_3R 22809998..22810156 363..521 100 -> Plus
arm_3R 22810217..22810358 522..663 99 -> Plus
arm_3R 22810427..22810493 664..730 100   Plus

BO13041.complete Sequence

1231 bp assembled on 2008-01-17

GenBank Submission: FJ632658

> BO13041.complete
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCT
GACCAATGGCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCA
CAGATCCCACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCC
ATCATTCACGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCG
CTTCAGCTACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCA
TGGTGCTGCGTTATGTATTCGCCGTGGACTTCCAGCTGGTGGACATTGAT
GATATGTTCGATAGCGGACGAAATGGCTCTGCACAAGTTCAGATTCAACC
GGTATACACTGAGGTAGTGCAGCAGAGCAGTCCACAGCACCAGACGCAGA
TGCGTCCGAGATCGGAAGATGACTATCAGAGTGCCAGGTCGCACTTGAGC
GATCTTGCAGTTCCACTTCTGGAGGTGCAAAGCCAGTCCCAGATTCCGCC
AACTAGCTTGGCCGCAAGCTTTCTAGACCAT

BO13041.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1200 CG14253-PB 1..1197 17..1213 5985 100 Plus
CG14253-RF 1173 CG14253-PF 64..1170 107..1213 5535 100 Plus
CG14253-RA 1173 CG14253-PA 64..1170 107..1213 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1886 CG14253-RB 238..1434 17..1213 5985 100 Plus
CG14253-RF 2286 CG14253-RF 728..1834 107..1213 5535 100 Plus
CG14253-RA 1981 CG14253-RA 423..1529 107..1213 5535 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985254 664..1213 2750 100 Plus
3R 32079331 3R 26983963..26984217 108..362 1275 100 Plus
3R 32079331 3R 26984276..26984434 363..521 795 100 Plus
3R 32079331 3R 26984490..26984636 517..663 720 99.3 Plus
3R 32079331 3R 26978778..26978868 17..107 455 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:44:48 has no hits.

BO13041.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:29 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 1..1200 17..1217 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:16 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 235..1431 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:42 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 238..1434 17..1215 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:30 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 228..1434 7..1217 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:26 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 238..1434 17..1215 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:26 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26978778..26978868 17..107 100 -> Plus
3R 26983963..26984217 108..362 100 -> Plus
3R 26984276..26984434 363..521 100 -> Plus
3R 26984495..26984636 522..663 100 -> Plus
3R 26984705..26985254 664..1215 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:42 Download gff for BO13041.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22804500..22804590 17..107 100 -> Plus
arm_3R 22809685..22809939 108..362 100 -> Plus
arm_3R 22809998..22810156 363..521 100 -> Plus
arm_3R 22810217..22810358 522..663 100 -> Plus
arm_3R 22810427..22810976 664..1215 99   Plus

BO13041.pep Sequence

Translation from 16 to 1231

> BO13041.pep
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLAA
SFLDH

BO13041.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-PB 399 CG14253-PB 1..399 1..399 2031 100 Plus
CG14253-PF 390 CG14253-PF 15..390 24..399 1892 98.4 Plus
CG14253-PA 390 CG14253-PA 15..390 24..399 1892 98.4 Plus
CG14253-PD 390 CG14253-PD 15..390 24..399 1892 98.4 Plus
CG14253-PE 390 CG14253-PE 15..390 24..399 1892 98.4 Plus