Clone Sequence Records
BO13041.3prime Sequence
681 bp (620 high quality bases) assembled on 2006-05-08
> BO13041.3prime
ATGGTCTAGAAAGCTTGCGGCCAAGCTAGTTGGCGGAATCTGGGACTGGC
TTTGCACCTCCAGAAGTGGAACTGCAAGATCGCTCAAGTGCGACCTGGCA
CTCTGATAGTCATCTTCCGATCTCGGACGCATCTGCGTCTGGTGCTGTGG
ACTGCTCTGCTGCACTACCTCAGTGTATACCGGTTGAATCTGAACTTGTG
CAGAGCCATTTCGTCCGCTATCGAACATATCATCAATGTCCACCAGCTGG
AAGTCCACGGCGAATACATAACGCAGCACCATGACCAGCAGAGCCACTAT
CCACAGTACCATTCCGATCAAGTAGCTGAAGCGGAAGAGCTCCAGATAAG
TATCATGGGATACGTTGTGGTCGTGAATGATGGGACGCAACAGGGCGATG
GCATCGCCGCAGGTGATGGCAGTGGGATCTGTGAGATTCTCCCTCAGTTG
GCCACAGAGGTGCTTAAGGTGGCCATTGGTCAGGATTGTGTAGATTACAC
TGCACAAACTCATCACCGAGAAAATAACGATGGAGGGCACCACAATGCGC
CACGGCTTCGGCAAAACTGAGCTCTTTTTGCTGCCTGGTCTGGTAAATCA
AACACATGGCTGTCCAGATAATGGCCCCGATCTCTGATATGAGGGGAAAT
ACGTAGACAAACTGAGCTCCTGGTCCTCTTT
BO13041.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PC | 1173 | CG14253-RC | 602..1170 | 587..19 | 2820 | 99.8 | Minus |
CG14253-PE | 1173 | CG14253-RE | 602..1170 | 587..19 | 2820 | 99.8 | Minus |
CG14253-PD | 1173 | CG14253-RD | 602..1170 | 587..19 | 2820 | 99.8 | Minus |
CG14253-PA | 1173 | CG14253-RA | 602..1170 | 587..19 | 2820 | 99.8 | Minus |
CG14253-PB | 1200 | CG14253-RB | 629..1197 | 587..19 | 2820 | 99.8 | Minus |
CG14253-PC | 1173 | CG14253-RC | 509..602 | 681..588 | 445 | 98.9 | Minus |
CG14253-PE | 1173 | CG14253-RE | 509..602 | 681..588 | 445 | 98.9 | Minus |
CG14253-PD | 1173 | CG14253-RD | 509..602 | 681..588 | 445 | 98.9 | Minus |
CG14253-PA | 1173 | CG14253-RA | 509..602 | 681..588 | 445 | 98.9 | Minus |
CG14253-PB | 1200 | CG14253-RB | 536..629 | 681..588 | 445 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RF | 2286 | CG14253-RF | 1173..1834 | 681..19 | 3260 | 99.5 | Minus |
CG14253-RB | 1886 | CG14253-RB | 773..1434 | 681..19 | 3260 | 99.5 | Minus |
CG14253-RA | 1981 | CG14253-RA | 868..1529 | 681..19 | 3260 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26984705..26985254 | 568..19 | 2735 | 99.8 | Minus |
3R | 32079331 | 3R | 26984525..26984636 | 681..569 | 500 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:36:13 has no hits.
BO13041.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:13 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PD | 509..1173 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:10 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PE | 509..1173 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:16:59 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RA | 868..1532 | 15..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:30:05 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RA | 868..1532 | 15..681 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:30:05 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26984525..26984636 | 569..681 | 98 | -> | Minus |
3R | 26984705..26985257 | 15..568 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:16:59 Download gff for
BO13041.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22810247..22810358 | 569..681 | 98 | -> | Minus |
arm_3R | 22810427..22810979 | 15..568 | 99 | | Minus |
BO13041.5prime Sequence
730 bp (653 high quality bases) assembled on 2006-05-08
> BO13041.5prime
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAAAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGC
BO13041.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PB | 1200 | CG14253-RB | 1..714 | 17..730 | 3545 | 99.8 | Plus |
CG14253-PC | 1173 | CG14253-RC | 64..687 | 107..730 | 3095 | 99.8 | Plus |
CG14253-PE | 1173 | CG14253-RE | 64..687 | 107..730 | 3095 | 99.8 | Plus |
CG14253-PD | 1173 | CG14253-RD | 64..687 | 107..730 | 3095 | 99.8 | Plus |
CG14253-PA | 1173 | CG14253-RA | 64..687 | 107..730 | 3095 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:14:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1886 | CG14253-RB | 238..951 | 17..730 | 3555 | 99.9 | Plus |
CG14253-RF | 2286 | CG14253-RF | 728..1351 | 107..730 | 3105 | 99.8 | Plus |
CG14253-RA | 1981 | CG14253-RA | 423..1046 | 107..730 | 3105 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:14:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26983963..26984217 | 108..362 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 363..521 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984636 | 517..663 | 705 | 98.6 | Plus |
3R | 32079331 | 3R | 26978778..26978868 | 17..107 | 455 | 100 | Plus |
3R | 32079331 | 3R | 26984705..26984771 | 664..730 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:14:54 has no hits.
BO13041.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:14 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PB | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:12 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-PB | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:25 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 231..951 | 7..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:43 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 231..951 | 7..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:43 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26978771..26978868 | 7..107 | 96 | -> | Plus |
3R | 26983963..26984217 | 108..362 | 100 | -> | Plus |
3R | 26984276..26984434 | 363..521 | 100 | -> | Plus |
3R | 26984495..26984636 | 522..663 | 99 | -> | Plus |
3R | 26984705..26984771 | 664..730 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:25 Download gff for
BO13041.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22804493..22804590 | 7..107 | 96 | -> | Plus |
arm_3R | 22809685..22809939 | 108..362 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 363..521 | 100 | -> | Plus |
arm_3R | 22810217..22810358 | 522..663 | 99 | -> | Plus |
arm_3R | 22810427..22810493 | 664..730 | 100 | | Plus |
BO13041.complete Sequence
1231 bp assembled on 2008-01-17
GenBank Submission: FJ632658
> BO13041.complete
GAAGTTATCAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTG
GTGATAGTCTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGC
TACGAACATATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCAT
ACTATGGAACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAA
TAGTCAGTGCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGAT
GAGTCCAGCAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTA
TGCCTATGGAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGA
AGAGCGAGAGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAG
AATCGACCGAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTAT
TTCTACCACGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGG
ATCGCCACTTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGG
GAAAGAGGACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGA
GATCGTGGCCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCA
GCAAAAAGAGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCC
ATCGTTATCTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCT
GACCAATGGCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCA
CAGATCCCACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCC
ATCATTCACGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCG
CTTCAGCTACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCA
TGGTGCTGCGTTATGTATTCGCCGTGGACTTCCAGCTGGTGGACATTGAT
GATATGTTCGATAGCGGACGAAATGGCTCTGCACAAGTTCAGATTCAACC
GGTATACACTGAGGTAGTGCAGCAGAGCAGTCCACAGCACCAGACGCAGA
TGCGTCCGAGATCGGAAGATGACTATCAGAGTGCCAGGTCGCACTTGAGC
GATCTTGCAGTTCCACTTCTGGAGGTGCAAAGCCAGTCCCAGATTCCGCC
AACTAGCTTGGCCGCAAGCTTTCTAGACCAT
BO13041.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1200 | CG14253-PB | 1..1197 | 17..1213 | 5985 | 100 | Plus |
CG14253-RF | 1173 | CG14253-PF | 64..1170 | 107..1213 | 5535 | 100 | Plus |
CG14253-RA | 1173 | CG14253-PA | 64..1170 | 107..1213 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1886 | CG14253-RB | 238..1434 | 17..1213 | 5985 | 100 | Plus |
CG14253-RF | 2286 | CG14253-RF | 728..1834 | 107..1213 | 5535 | 100 | Plus |
CG14253-RA | 1981 | CG14253-RA | 423..1529 | 107..1213 | 5535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26984705..26985254 | 664..1213 | 2750 | 100 | Plus |
3R | 32079331 | 3R | 26983963..26984217 | 108..362 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 363..521 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984636 | 517..663 | 720 | 99.3 | Plus |
3R | 32079331 | 3R | 26978778..26978868 | 17..107 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:44:48 has no hits.
BO13041.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:29 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 1..1200 | 17..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:16 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 235..1431 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:41:42 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 238..1434 | 17..1215 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:30 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 228..1434 | 7..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:59:26 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 238..1434 | 17..1215 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:59:26 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26978778..26978868 | 17..107 | 100 | -> | Plus |
3R | 26983963..26984217 | 108..362 | 100 | -> | Plus |
3R | 26984276..26984434 | 363..521 | 100 | -> | Plus |
3R | 26984495..26984636 | 522..663 | 100 | -> | Plus |
3R | 26984705..26985254 | 664..1215 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:41:42 Download gff for
BO13041.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22804500..22804590 | 17..107 | 100 | -> | Plus |
arm_3R | 22809685..22809939 | 108..362 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 363..521 | 100 | -> | Plus |
arm_3R | 22810217..22810358 | 522..663 | 100 | -> | Plus |
arm_3R | 22810427..22810976 | 664..1215 | 99 | | Plus |
BO13041.pep Sequence
Translation from 16 to 1231
> BO13041.pep
MGSRPQRIRRIGDSLQMLTREARSEVVRYEHIVICLMVMIAVFSILWNIT
LIMISGDLYEGIVSAKLIFRERSVDKMDESSKEILHRDFIKATQYAYGRQ
YSVQDVTPESLKSESQIFKLPHIYESIENRPKLERLIAENKVEVISTTTT
PPPKITFNAEADRHFLSTMSIDVMATVWERGPGAQFVYVFPLISEIVAII
WTAMCLIYQTGSKKSSVLPKPWRIVVPSIVIFSVMSLCSVIYTILTNGHL
KHLCGQLRENLTDPTAITCGDAIALLRPIIHDHNVSHDTYLELFRFSYLI
GMVLWIVALLVMVLRYVFAVDFQLVDIDDMFDSGRNGSAQVQIQPVYTEV
VQQSSPQHQTQMRPRSEDDYQSARSHLSDLAVPLLEVQSQSQIPPTSLAA
SFLDH
BO13041.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-PB | 399 | CG14253-PB | 1..399 | 1..399 | 2031 | 100 | Plus |
CG14253-PF | 390 | CG14253-PF | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PA | 390 | CG14253-PA | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PD | 390 | CG14253-PD | 15..390 | 24..399 | 1892 | 98.4 | Plus |
CG14253-PE | 390 | CG14253-PE | 15..390 | 24..399 | 1892 | 98.4 | Plus |