Clone BO13043 Report

Search the DGRC for BO13043

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlG-RA
Protein status:BO13043.pep:
Sequenced Size:868

Clone Sequence Records

BO13043.5prime Sequence

698 bp (638 high quality bases) assembled on 2006-05-08

> BO13043.5prime
GAAGTTATCAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAGCAGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAAACCA
AGGAGGAAGCTGCGCATGCGCAACGTACCATTCAAGCTCAATTATGAC

BO13043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14643-PA 837 CG14643-RA 1..676 17..692 3330 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-RC 2165 CG14643-RC 1201..1881 17..698 3355 99.6 Plus
TwdlG-RB 1013 CG14643-RB 49..729 17..698 3355 99.6 Plus
TwdlG-RA 1620 CG14643-RA 656..1336 17..698 3355 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4249191..4249845 686..32 3245 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 19:19:50 has no hits.

BO13043.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:17 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14643-PA 1..681 17..698 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:15 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14643-PA 1..681 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:47 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 646..1336 8..698 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:56 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 646..1336 8..698 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:56 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4249191..4249845 32..686 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:47 Download gff for BO13043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 74913..75567 32..686 99 <- Minus

BO13043.complete Sequence

868 bp assembled on 2008-01-17

GenBank Submission: FJ632659

> BO13043.complete
GAAGTTATCAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAGCAGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCC
AGGAGGAAGCTGCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAG
CTTGGCGGAACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATC
CGTGATTGGCGTACTGGACAACCAGCGCAACAACGGAATTTCATCCGGAC
AGTTTTCTGGCTCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCT
GCAAGCTTTCTAGACCAT

BO13043.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-RC 837 CG14643-PC 1..834 17..850 4170 100 Plus
TwdlG-RB 837 CG14643-PB 1..834 17..850 4170 100 Plus
TwdlG-RA 837 CG14643-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-RC 2165 CG14643-RC 1201..2034 17..850 4170 100 Plus
TwdlG-RB 1013 CG14643-RB 49..882 17..850 4170 100 Plus
TwdlG-RA 1620 CG14643-RA 656..1489 17..850 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4249191..4249845 686..32 3275 100 Minus
3R 32079331 3R 4248854..4249019 850..685 830 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:02:03 has no hits.

BO13043.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:30 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 1..837 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:50 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 656..1489 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:28 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 656..1489 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:31 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 646..1489 8..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:15 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlG-RA 656..1489 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:15 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4248852..4249017 687..852 98 <- Minus
3R 4249191..4249845 32..686 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:28 Download gff for BO13043.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 74574..74739 687..852 98 <- Minus
arm_3R 74913..75567 32..686 100 <- Minus

BO13043.pep Sequence

Translation from 16 to 868

> BO13043.pep
MHFFIVPCLLGLAAGIPQGYNYQAQQQLQSSAQAGQLHLPSIPQFATLAE
QTILQQALQAPKLQQVLTGGEGLASYSNQNQASAYQQQATQFGPNSAYNA
LPQAHQPQQQHLVSKDIYVHVPPAEEPEDRYPQPVLPPAPPRKHYRIVFI
KAPTTSVSKAALRIKQAPVEEKTIIYVLTKKPDPLDLQTAIEEIAPKQPS
KPEVFFIKYKTQEEAAHAQRTIQAQYDQLGGTSQVSDEGVAPVTSVIGVL
DNQRNNGISSGQFSGSLPNSYLPTNLRAASFLDH

BO13043.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlG-PC 278 CG14643-PC 1..278 1..278 1428 100 Plus
TwdlG-PB 278 CG14643-PB 1..278 1..278 1428 100 Plus
TwdlG-PA 278 CG14643-PA 1..278 1..278 1428 100 Plus
TwdlF-PA 354 CG14639-PA 4..275 3..246 424 41.2 Plus
TwdlV-PA 251 CG14640-PA 1..250 1..275 387 38.8 Plus