Clone Sequence Records
BO13043.5prime Sequence
698 bp (638 high quality bases) assembled on 2006-05-08
> BO13043.5prime
GAAGTTATCAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAGCAGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAAACCA
AGGAGGAAGCTGCGCATGCGCAACGTACCATTCAAGCTCAATTATGAC
BO13043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14643-PA | 837 | CG14643-RA | 1..676 | 17..692 | 3330 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlG-RC | 2165 | CG14643-RC | 1201..1881 | 17..698 | 3355 | 99.6 | Plus |
TwdlG-RB | 1013 | CG14643-RB | 49..729 | 17..698 | 3355 | 99.6 | Plus |
TwdlG-RA | 1620 | CG14643-RA | 656..1336 | 17..698 | 3355 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:19:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4249191..4249845 | 686..32 | 3245 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:19:50 has no hits.
BO13043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:17 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14643-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:15 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14643-PA | 1..681 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:47 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 646..1336 | 8..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:44:56 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 646..1336 | 8..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:44:56 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4249191..4249845 | 32..686 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:47 Download gff for
BO13043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 74913..75567 | 32..686 | 99 | <- | Minus |
BO13043.complete Sequence
868 bp assembled on 2008-01-17
GenBank Submission: FJ632659
> BO13043.complete
GAAGTTATCAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGAC
TTGCAGCCGGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTT
CAATCGTCGGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTT
TGCCACCCTTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAA
AGTTGCAGCAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAAT
CAAAACCAGGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAA
TTCGGCGTACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACC
TCGTCTCCAAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAG
GACCGCTACCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTA
TCGCATAGTTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGT
TGCGCATCAAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTG
ACCAAGAAGCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGC
GCCGAAGCAGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCC
AGGAGGAAGCTGCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAG
CTTGGCGGAACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATC
CGTGATTGGCGTACTGGACAACCAGCGCAACAACGGAATTTCATCCGGAC
AGTTTTCTGGCTCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCT
GCAAGCTTTCTAGACCAT
BO13043.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlG-RC | 837 | CG14643-PC | 1..834 | 17..850 | 4170 | 100 | Plus |
TwdlG-RB | 837 | CG14643-PB | 1..834 | 17..850 | 4170 | 100 | Plus |
TwdlG-RA | 837 | CG14643-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlG-RC | 2165 | CG14643-RC | 1201..2034 | 17..850 | 4170 | 100 | Plus |
TwdlG-RB | 1013 | CG14643-RB | 49..882 | 17..850 | 4170 | 100 | Plus |
TwdlG-RA | 1620 | CG14643-RA | 656..1489 | 17..850 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4249191..4249845 | 686..32 | 3275 | 100 | Minus |
3R | 32079331 | 3R | 4248854..4249019 | 850..685 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:02:03 has no hits.
BO13043.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:30 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 1..837 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:50 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 656..1489 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:44:28 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 656..1489 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:31 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 646..1489 | 8..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:49:15 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlG-RA | 656..1489 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:49:15 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4248852..4249017 | 687..852 | 98 | <- | Minus |
3R | 4249191..4249845 | 32..686 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:44:28 Download gff for
BO13043.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 74574..74739 | 687..852 | 98 | <- | Minus |
arm_3R | 74913..75567 | 32..686 | 100 | <- | Minus |
BO13043.pep Sequence
Translation from 16 to 868
> BO13043.pep
MHFFIVPCLLGLAAGIPQGYNYQAQQQLQSSAQAGQLHLPSIPQFATLAE
QTILQQALQAPKLQQVLTGGEGLASYSNQNQASAYQQQATQFGPNSAYNA
LPQAHQPQQQHLVSKDIYVHVPPAEEPEDRYPQPVLPPAPPRKHYRIVFI
KAPTTSVSKAALRIKQAPVEEKTIIYVLTKKPDPLDLQTAIEEIAPKQPS
KPEVFFIKYKTQEEAAHAQRTIQAQYDQLGGTSQVSDEGVAPVTSVIGVL
DNQRNNGISSGQFSGSLPNSYLPTNLRAASFLDH
BO13043.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlG-PC | 278 | CG14643-PC | 1..278 | 1..278 | 1428 | 100 | Plus |
TwdlG-PB | 278 | CG14643-PB | 1..278 | 1..278 | 1428 | 100 | Plus |
TwdlG-PA | 278 | CG14643-PA | 1..278 | 1..278 | 1428 | 100 | Plus |
TwdlF-PA | 354 | CG14639-PA | 4..275 | 3..246 | 424 | 41.2 | Plus |
TwdlV-PA | 251 | CG14640-PA | 1..250 | 1..275 | 387 | 38.8 | Plus |