Clone BO13046 Report

Search the DGRC for BO13046

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG31999-RA
Protein status:BO13046.pep: Imported from assembly
Sequenced Size:2785

Clone Sequence Records

BO13046.3prime Sequence

655 bp (502 high quality bases) assembled on 2006-05-08

> BO13046.3prime
AAATGGTCTAGAAAGCTTGCAAATGTATGTTGAGAAACAAACAGAAATAA
TTTTGCTACACTTTTTCCACGAGGCATTCCGTTTGTGTACACTGTCATAC
TTAACTCCAACTCGATGTCCTGGGGTCCCTCCAGTGATTTCTTTAATATC
ACGTTAACTTGGTTGTTGTTTTGTAAAGTGTCAAAACTCCCATCGGTTGC
CTTTTGAATATTGGTGGTTGCTTGTATGCGAACAATTTTAAGATCAAATT
CGATATTATCATACCAAAGTGGACCTCTCAATGTAAATATGGTACGACCA
TCTGGAGGTATCATTAGCTTAGAAACGAATGTTATAAAATTATATGTGAA
AGCTGACGGTTGGGTGTAACATTCTTCTCCTTCACAAAAGTTAAGATTCT
GGCGGCACCGGTTTTTTTGTTCTGGGTCAATGCTGTATCCAAGTGGACAA
TTAACGGTAGTACATTTGTAGCTTCCTCTGATATTGGTGCAAATGTCATT
CCGGCCAGTACAAACTTGATTAATGGAATCTGTTGCGCATTCATCGACAT
CACGACACGTATTCATATCTGCAGCCAATTATATACCCACGTGGACAGGA
ACATTGATACAAACCAGGAGTGTTTATGCATAATCCCCATACATAGTTTG
TAAAT

BO13046.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-PA 2754 CG31999-RA 2193..2751 579..21 2795 100 Minus
CG31999-PA 2754 CG31999-RA 2136..2193 637..580 240 96.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-RC 3639 CG31999-RC 2910..3540 653..21 3085 99.4 Minus
CG31999-RA 2972 CG31999-RA 2243..2873 653..21 3085 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 215330..215560 181..411 1155 100 Plus
4 1348131 4 215108..215267 21..180 800 100 Plus
4 1348131 4 218248..218381 501..635 595 97.8 Plus
4 1348131 4 217406..217495 412..501 450 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:38:03 has no hits.

BO13046.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:23 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-PA 2120..2754 17..655 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:22 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-PA 2120..2754 17..655 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 15:01:06 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 2242..2881 13..655 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:29 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 2242..2881 13..655 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:29 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
4 215103..215267 16..180 98 <- Plus
4 215330..215560 181..411 100 <- Plus
4 217406..217494 412..500 100 <- Plus
4 218248..218380 501..634 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 15:01:06 Download gff for BO13046.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 235729..235893 16..180 98 <- Plus
arm_4 235956..236186 181..411 100 <- Plus
arm_4 238032..238120 412..500 100 <- Plus
arm_4 238874..239006 501..634 97 <- Plus

BO13046.5prime Sequence

616 bp (474 high quality bases) assembled on 2006-05-08

> BO13046.5prime
GAAGTTATCAGTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCT
TGATAGTTGGAGGGCATGTCACCACCACAATGGCCAGTGACAGCATATCG
GGTTATATACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGAC
CGCCTCTTGCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCT
GGCTTGGACTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTG
GACCATCAAGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCG
CTGTGACGGAGAAAGAAATGTAACATCTAGCTCCTATGCGACATGTTGTC
GTTCTTGTCAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAA
GATCCATTATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTG
TTACGGATCTGCTGACTTTAAAGACCATCCCGGTATCGACGAAATCGATA
AGGCTAATTCTATTACTGATGAAGGTGAATTGCCGTTTGTTTCTGAAGAG
GATATGAATGTAACTATTGTTCTTACCGGCGATGATGACATATGTGGAAA
AATTGAAAACCTTTGC

BO13046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-PA 2754 CG31999-RA 1..600 17..616 2950 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-RC 3639 CG31999-RC 790..1389 17..616 2970 99.7 Plus
CG31999-RA 2972 CG31999-RA 123..722 17..616 2970 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 223945..224440 584..89 2450 99.6 Minus
4 1348131 4 225762..225834 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:25:17 has no hits.

BO13046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:24 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:24 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-PA 1..600 17..616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:17:39 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 119..722 13..616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 21:12:39 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 119..722 13..616 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 21:12:39 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
4 223945..224439 90..584 99 <- Minus
4 225762..225838 13..89 97   Minus
4 223855..223886 585..616 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:17:39 Download gff for BO13046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 244481..244512 585..616 100 <- Minus
arm_4 244571..245065 90..584 99 <- Minus
arm_4 246388..246464 13..89 97   Minus

BO13046.complete Sequence

2785 bp assembled on 2008-11-10

GenBank Submission: KX795967

> BO13046.complete
GAAGTTATCAGTCGACATGTTTTATAAACTATGTGCTTTTATGTGTTTCT
TGATAGTTGGAGGGCATGTCACCACCACAATGGCCAGTGACAGCATATCG
GGTTATATACGAAAATGCTGTATAAATGGACTTCGACATGCTCGTACGAC
CGCCTCTTGCAAAAAAATCGACATAGCCCCAACAATAATCCCGCAGCTCT
GGCTTGGACTTTGTCATTCTACACTTGAAGTCTGCTGTTCTCGAGAACTG
GACCATCAAGATTGCGAGCTAGGTCGACTGGCTGCTTTAGACGGTACTCG
CTGTGACGGAGAAGGAAATGTAACATCTAGCTCCTATGCGACATGTTGTC
GTTCTTGTCAAATCGGATTAGCAGTTAAAGCGAGTAAAGCCAATTGCAAA
GATCCATTATTTTCATTTATTTTCTTAATTGAATCATACCGAGCGTGCTG
TTACGGATCTGCTGACTTTAAAGACCAGCCCGGTATCGACGAAATCGATA
AGGCTAATTCTATTACTGATGAAGGTGAATTGCCGTTTGTTTCTGAAGAG
GATATGAATGTAACTATTGTTCTTACCGGCGATGATGACATATGTGGAAA
AATTGAAAACCTTTGCGCTCACATATGCGAAAACACTTTCGACGCATACC
AATGTAAGTGCCACCCCGGGTTTATGTTAGATAATAACAACGTAACATGC
TCTCCGATGAAAACCCAAATATGTCCCAGCGGTTACAATTTAGATAAACT
GGATAACAAATGCATTGACATTGATGAATGCCGGGAAGATCTTCATGACT
GCAAATCATCCCAATATTGCCATAATACGAATGGCGGATACCACTGCTTA
AATGTGAAAGAAAAAGAGTGTCCACCAGGATTTCATTATGACCATGATTA
CGATGCATGTAAAGATGATTACAAATGCAAAGATCGTAAATGCGTTAAAA
TTCAATCTTGTGATAAAGGATTCAGCTTGCATAACGGTACCTGTTCCGAT
ATTGACGAGTGCTCACATAAATCATTAAACAACTGTCATGTCAATAGTAA
TCAGGAATGTGTTAACACAGTGGGAAGTTATTCCTGCAATTGCCTGCCTG
GATTTAATTTGGATGCTACACTAAATAAGTGTGTTGATATAAATGAATGT
TCAATAAATAATCACAACTGCCTTCCAACTCAGAGATGTGATAACACGAT
CGGATCATATATATGCACGCGCCTACAAAGCTGCGGAACAGGCTATACCT
TAAATGCAGAAACGGGGAATTGTGACGATGATGATGAATGCACCCTTAGT
ACACATAACTGTCCGTCAAACTATGATTGTCACAACACGAGGGGATCATT
CCGATGTTATAGAAAAATCTCAACAATGTTAACAACAAGAACGACATCAA
CTACAGTTCCGCCTTTATCTTTGGAAAACGCACGAAGGAGTTTTACTAGC
CGATACCCATACCCATTAGCCGTACATCCGGAATACTCACAAAACAACGA
TTCCATTTCTACGAATCGGCGTGTAGACTGCTCCCCTGGATTTTATAGGA
ATACTCTTGGTGCCTGCATAGATACAAATGAATGCATGGAACAAAATCCG
TGCGGAAACCATGAACGATGCATTAACACAAATGGCCATTTCCGCTGCGA
AAGTCTGCTCCAGTGCTCGCCCGGCTACAAATCAACAGTGGACGGTAAAT
CATGCATAGACATTGATGAGTGCGATACTGGTGAACACAATTGTGGCGAA
AGACAGATTTGCCGTAATCGAAACGGTGGCTTTGTGTGCTCCTGCCCGAT
AGGTCATGAGCTCAAACGATCCATTGGTGGTGCTAGTACATGTGTTGACA
CGAACGAATGCGCTCTAGAACAACGTGTATGTCCATTGAACGCCCAGTGC
TTTAACACTATTGGAGCTTACTACTGCGAATGCAAAGCTGGCTTTCAAAA
GAAATCTGATGGTAATAATAGCACACAATGTTTTGATATCGATGAGTGTC
AAGTGATTCCGGGACTTTGTCAACAAAAATGTCTCAACTTTTGGGGAGGA
TATCGATGCACTTGTAACTCTGGATACCAATTGGGACCGGACAACCGGAC
ATGCAATGATATAAATGAATGCGAAGTACATAAGGATTACAAACTATGTA
TGGGATTATGCATAAACACTCCTGGTTCGTATCAATGTTCCTGTCCACGT
GGATATATATTGGCTGCAGATATGAATACGTGTCGTGATGTCGATGAATG
CGCAACAGATTCCATTAATCAAGTTTGTACTGGCCGGAATGACATTTGCA
CCAATATCAGAGGAAGCTACAAATGTACTACCGTTAATTGTCCACTTGGA
TACAGCATTGACCCAGAACAAAAAAACCGGTGCCGCCAGAATCTTAACTT
TTGTGAAGGAGAAGAATGTTACACCCAACCGTCAGCTTTCACATATAATT
TTATAACATTCGTTTCTAAGCTAATGATACCTCCAGATGGTCGTACCATA
TTTACATTGAGAGGTCCACTTTGGTATGATAATATCGAATTTGATCTTAA
AATTGTTCGCATACAAGCAACCACCAATATTCAAAAGGCAACCGATGGGA
GTTTTGACACTTTACAAAACAACAACCAAGTTAACGTGATATTAAAGAAA
TCACTGGAGGGACCCCAGGACATCGAGTTGGAGTTAAGTATGACAGTGTA
CACAAACGGAATGCCTCGTGGAAAAAGTGTAGCAAAATTATTTCTGTTTG
TTTCTCAACATACATTTGCAAGCTTTCTAGACCAT

BO13046.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-RC 2754 CG31999-PC 1..2751 17..2767 13755 100 Plus
CG31999-RA 2754 CG31999-PA 1..2751 17..2767 13755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-RC 3639 CG31999-RC 790..3540 17..2767 13755 100 Plus
CG31999-RA 2972 CG31999-RA 123..2873 17..2767 13755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 223945..224440 584..89 2480 100 Minus
4 1348131 4 218446..218894 2154..1706 2245 100 Minus
4 1348131 4 223557..223887 914..584 1655 100 Minus
4 1348131 4 220144..220438 1571..1277 1475 100 Minus
4 1348131 4 215330..215560 2607..2377 1155 100 Minus
4 1348131 4 222791..223014 1136..913 1120 100 Minus
4 1348131 4 215108..215267 2767..2608 800 100 Minus
4 1348131 4 219891..220030 1709..1570 700 100 Minus
4 1348131 4 218248..218381 2287..2154 670 100 Minus
4 1348131 4 217406..217495 2376..2287 450 100 Minus
4 1348131 4 222654..222737 1219..1136 420 100 Minus
4 1348131 4 225762..225834 89..17 365 100 Minus
4 1348131 4 222541..222599 1277..1219 295 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:24:45 has no hits.

BO13046.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:48 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 117..2879 13..2775 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:57:10 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 130..2873 24..2769 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:31 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 128..2871 24..2769 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:00:10 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
CG31999-RA 130..2873 24..2769 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:00:10 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
4 223557..223886 585..914 100 <- Minus
4 215106..215267 2608..2769 98 <- Minus
4 215330..215560 2377..2607 100 <- Minus
4 217406..217494 2288..2376 100 <- Minus
4 218248..218380 2155..2287 100 <- Minus
4 218446..218890 1710..2154 100 <- Minus
4 219891..220028 1572..1709 100 <- Minus
4 220144..220437 1278..1571 100 <- Minus
4 222541..222598 1220..1277 100 <- Minus
4 222654..222736 1137..1219 100 <- Minus
4 222791..223012 915..1136 100 <- Minus
4 223945..224439 90..584 100 <- Minus
4 225762..225827 24..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:57:10 Download gff for BO13046.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 243280..243362 1137..1219 100 <- Minus
arm_4 238874..239006 2155..2287 100 <- Minus
arm_4 243167..243224 1220..1277 100 <- Minus
arm_4 235732..235893 2608..2769 98 <- Minus
arm_4 235956..236186 2377..2607 100 <- Minus
arm_4 238032..238120 2288..2376 100 <- Minus
arm_4 239072..239516 1710..2154 100 <- Minus
arm_4 240517..240654 1572..1709 100 <- Minus
arm_4 240770..241063 1278..1571 100 <- Minus
arm_4 243417..243638 915..1136 100 <- Minus
arm_4 244183..244512 585..914 100 <- Minus
arm_4 244571..245065 90..584 100 <- Minus
arm_4 246388..246453 24..89 100   Minus

BO13046.pep Sequence

Translation from 16 to 2785

> BO13046.pep
MFYKLCAFMCFLIVGGHVTTTMASDSISGYIRKCCINGLRHARTTASCKK
IDIAPTIIPQLWLGLCHSTLEVCCSRELDHQDCELGRLAALDGTRCDGEG
NVTSSSYATCCRSCQIGLAVKASKANCKDPLFSFIFLIESYRACCYGSAD
FKDQPGIDEIDKANSITDEGELPFVSEEDMNVTIVLTGDDDICGKIENLC
AHICENTFDAYQCKCHPGFMLDNNNVTCSPMKTQICPSGYNLDKLDNKCI
DIDECREDLHDCKSSQYCHNTNGGYHCLNVKEKECPPGFHYDHDYDACKD
DYKCKDRKCVKIQSCDKGFSLHNGTCSDIDECSHKSLNNCHVNSNQECVN
TVGSYSCNCLPGFNLDATLNKCVDINECSINNHNCLPTQRCDNTIGSYIC
TRLQSCGTGYTLNAETGNCDDDDECTLSTHNCPSNYDCHNTRGSFRCYRK
ISTMLTTRTTSTTVPPLSLENARRSFTSRYPYPLAVHPEYSQNNDSISTN
RRVDCSPGFYRNTLGACIDTNECMEQNPCGNHERCINTNGHFRCESLLQC
SPGYKSTVDGKSCIDIDECDTGEHNCGERQICRNRNGGFVCSCPIGHELK
RSIGGASTCVDTNECALEQRVCPLNAQCFNTIGAYYCECKAGFQKKSDGN
NSTQCFDIDECQVIPGLCQQKCLNFWGGYRCTCNSGYQLGPDNRTCNDIN
ECEVHKDYKLCMGLCINTPGSYQCSCPRGYILAADMNTCRDVDECATDSI
NQVCTGRNDICTNIRGSYKCTTVNCPLGYSIDPEQKNRCRQNLNFCEGEE
CYTQPSAFTYNFITFVSKLMIPPDGRTIFTLRGPLWYDNIEFDLKIVRIQ
ATTNIQKATDGSFDTLQNNNQVNVILKKSLEGPQDIELELSMTVYTNGMP
RGKSVAKLFLFVSQHTFASFLDH

BO13046.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31999-PC 917 CG31999-PC 1..917 1..917 5163 100 Plus
CG31999-PA 917 CG31999-PA 1..917 1..917 5163 100 Plus
frac-PC 1618 CG7526-PC 397..1014 83..777 647 28.7 Plus
frac-PE 1618 CG7526-PE 397..1014 83..777 647 28.7 Plus
frac-PD 1618 CG7526-PD 397..1014 83..777 647 28.7 Plus
frac-PC 1618 CG7526-PC 195..1012 152..815 644 26.1 Plus
frac-PE 1618 CG7526-PE 195..1012 152..815 644 26.1 Plus