Clone Sequence Records
BO13048.complete Sequence
2101 bp assembled on 2010-04-13
GenBank Submission: KX796402
> BO13048.complete
GAAGTTATCAGTCGACATGAAGGAGTTTAGTAAAATGTTTGCGCGACGAT
ATAGTTCAGTATCAAGAGACGTAGAGGCCAGCAATCAGCGGCAGTCAGCA
GTGACCCCTGGATCTGGGTTGAGCACAGACGCAGATCCTGCGGTGTCTTG
TGCCGCTCAGGTAGCACTGCAACGAATCCAGCGCCGCAAAAGTCTCAAGG
CAAATCGTTCAATGAATCCGATAGACATACTAAGCAGCTTTTTCAACGAG
CCAATCCAAGGCAAACGGAATCGAGTTCCTACCCGTTTATTTATACTTCT
AGTCATCGGATTTTTGGCTATTATAACATCTACACTGATTAAAGTTTTGG
AACCATACGATTTGATATTTAAATGGAAATTAATCATGACAGAGGGAGGT
GAGATCTTTAATCTGTGGGCCCAGCCTCCAGTCGATCTGTATATTAAGAT
ATATTTGTTCAACATAACCAATGCCAACGCGTTTTTAGCGGGTCGCGAGC
AGCTTAGAGTCGAACAAGTTGGTCCCTATGTTTATAAGGAGATAATGACA
CATGAGAATGTAACGTTCAATTCGAATAACACCATGTCCAGCACTCCCAG
TCATCCCTTAGTCTGGCAGGAGGAAATGTCTGGGAATTGTCGTGAGGACG
ATGAGGTTGTAATGCTCAATATTGCCATGCTGGCAATATCACACCTTACT
GCCAACCAGCCGTTCTTAGTTAGAATGGCTCTGAAGACACTACTACTGAG
TACAAAGTCGGAGCCAATAGTTCGCACCACTGCCAAGGAATTCATGTTTG
GCTATCCCTCCGCCCTGGCCACTCTCGGCAACACCTTCCTTCCAAATTGG
ATTTCCTTTGAAAAGGTTGGGCTTATCGATCGCATGTACGACTTCTCAAC
GGATTTCGAGACGTTCTACACAGGCGTGCCCAATCCAGCGCTTTCGGGAT
TATATGCATCGTATCGCGGAGAGACAACGCTGCCACAGTGGGACGGGGAC
CATTGCAGCAACATAGAGTTTGCATCTGATGGTACAAAGTTCAAAAGCTT
CATTCAGCCTAACGAGACCGTTAAGTTCTTCCGAAAAAGCATGTGTAGAC
CGATAAACTTGTACCGGGTGGGAAACGAAAAAACCTATGGCAGCCTTAAA
GGATATAATTATGTATTTGAGGATAACGCCTTTGATAATGGCGCAACTAA
TGAAGCTAACAAATGTTTTTGTAGAAAAGGTGACTGTCAGCCGGTTGGAC
TTATTGATGTTACTGACTGCTATTACGGATTCCCAATCTCCTTAAGTTTT
CCCCACTTCATGAACGGTGACGTGGGGCTCCAACAAAACGTCACCGGCAT
AAGTCCAGATCCGGATAAACACTCATCAACCTTTGTCATTCAACCGGAAT
CCGGCCTGCCGTTGTCACTCTCTGTAAAAGTGCAAATTAACATGCACTTT
AAGGACCTGAGCAATTTTCCAGTAGTATCTGTATTTAATCATCTAACAGT
GCCAATGTTGTGGTTTGAAATCATGATGTCAAAGCTGCCCGACAGCTTGG
ACTCGCGGTTCAACTTTTACCTGAACATTTTGCCGTTAGTTAATCCCTTA
GGCTTTTGGAGTGGCATACTATTGGGAATAAGTCTTTTGGGGTATGCAAT
AACCAAGGCCACGCTTCACATGTCTACCTTTTCTCGACGAGCTGCTAATA
TAACAGATGTTAAATATGTACGAGCAAATTTAATTCAAAACATCGCAGGT
GAAGCAGCGAATCATGCTTACAGTCCGTGCGATATTAAGTTACTAGATGA
TATTTCGGTTGTAAGGCATCCTGTTAATAAGCAAACAGTCCAGGATTCTG
GATTCAGTTCAAAAACAACATACGCCTTGGATATGGAACCTGCTTTATTA
GACACGAGCGAGAGCAGCGACGAGGGGCGAGATTGTGATATTGTTACCAT
ATCCCGTAATTCTACAAGCACCCGCTTTTGCGCAGATGAAAAAAAATGCT
GGCTCGGCGACGATATACGAGTCGAGTGTTTCACCGAGAGTCGAGCTCCT
CAAACGATTTTGAAAAGGGAAGAACAAATACATGCAAGCTTTCTAGACCA
T
BO13048.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-RA | 2070 | CG40006-PA | 1..2067 | 17..2083 | 10320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-RA | 2590 | CG40006-RA | 226..2292 | 17..2083 | 10320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22643140..22643700 | 2083..1523 | 2805 | 100 | Minus |
| 2L | 23513712 | 2L | 22688181..22688610 | 1111..682 | 2150 | 100 | Minus |
| 2L | 23513712 | 2L | 22755855..22756124 | 286..17 | 1335 | 99.6 | Minus |
| 2L | 23513712 | 2L | 22675923..22676092 | 1397..1228 | 850 | 100 | Minus |
| 2L | 23513712 | 2L | 22718566..22718728 | 538..376 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 22718367..22718512 | 683..538 | 730 | 100 | Minus |
| 2L | 23513712 | 2L | 22643757..22643883 | 1522..1396 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 22688004..22688124 | 1231..1111 | 605 | 100 | Minus |
| 2L | 23513712 | 2L | 22718884..22718975 | 376..285 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:36:12 has no hits.
BO13048.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:45 Download gff for
BO13048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 226..2292 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:13 Download gff for
BO13048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 226..2292 | 17..2085 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:13 Download gff for
BO13048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 226..2292 | 17..2085 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:13 Download gff for
BO13048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22755857..22756124 | 17..284 | 99 | | Minus |
| 2L | 22643138..22643700 | 1523..2085 | 99 | <- | Minus |
| 2L | 22643757..22643882 | 1397..1522 | 100 | <- | Minus |
| 2L | 22675924..22676090 | 1230..1396 | 100 | <- | Minus |
| 2L | 22688006..22688123 | 1112..1229 | 100 | <- | Minus |
| 2L | 22688181..22688609 | 683..1111 | 100 | <- | Minus |
| 2L | 22718368..22718512 | 538..682 | 100 | <- | Minus |
| 2L | 22718567..22718727 | 377..537 | 100 | <- | Minus |
| 2L | 22718884..22718975 | 285..376 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:13 Download gff for
BO13048.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22535870..22536432 | 1523..2085 | 99 | <- | Minus |
| arm_2L | 22536489..22536614 | 1397..1522 | 100 | <- | Minus |
| arm_2L | 22568656..22568822 | 1230..1396 | 100 | <- | Minus |
| arm_2L | 22580738..22580855 | 1112..1229 | 100 | <- | Minus |
| arm_2L | 22580913..22581341 | 683..1111 | 100 | <- | Minus |
| arm_2L | 22611100..22611244 | 538..682 | 100 | <- | Minus |
| arm_2L | 22611299..22611459 | 377..537 | 100 | <- | Minus |
| arm_2L | 22611616..22611707 | 285..376 | 100 | <- | Minus |
| arm_2L | 22648589..22648856 | 17..284 | 99 | | Minus |
BO13048.3prime Sequence
791 bp (653 high quality bases) assembled on 2006-05-08
> BO13048.3prime
ATGGTCTAGAAAGCTTGCATGTATTTGTTCTTCCCTTTTCAAAATCGTTT
GAGGAGCTCGACTCTCGGTGAAACACTCGACTCGTATATCGTCGCCGAGC
CAGCATTTTTTTTCATCTGCGCAAAAGCGGGTGCTTGTAGAATTACGGGA
TATGGTAACAATATCACAATCTCGCCCCTCGTCGCTGCTCTCGCTCGTGT
CTAATAAAGCAGGTTCCATATCCAAGGCGTATGTTGTTTTTGAACTGAAT
CCAGAATCCTGGACTGTTTGCTTATTAACAGGATGCCTTACAACCGAAAT
ATCATCTAGTAACTTAATATCGCACGGACTGTAAGCATGATTCGCTGCTT
CACCTGCGATGTTTTGAATTAAATTTGCTCGTACATATTTAACATCTGTT
ATATTAGCAGCTCGTCGAGAAAAGGTAGACATGTGAAGCGTGGCCTTGGT
TATTGCATACCCCAAAAGACTTATTCCCAATAGTATGCCACTCCAAAAGC
CTAAGGGATTAACTAACGGCAAAATGTTCAGGTAAAAGTTGAACCGCGAG
TCCAAGCTGTCGGGCAGCTTTGACATCATGATTTCAAACCACAACATTGG
CACTGTTAGATGATTAAATACAGATACTACTGGAAAATTGCTCAGGTCCT
TAAAGTGCATGTTAATTTGCACTTTTACAGAGAGTGACAACGGCAGGCCG
GATTCCGGTTGAATGACAAAGGTTGATGAGTGTTTATCCGGATCTGGACT
TATGCGGGGACGTTTTGTTGGAACCCCACGTCACCGTTCAT
BO13048.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-PA | 2070 | CG40006-RA | 1331..2067 | 755..19 | 3685 | 100 | Minus |
| CG40006-PA | 2070 | CG40006-RA | 1294..1326 | 791..759 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-RA | 2590 | CG40006-RA | 1519..2292 | 791..19 | 3815 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22643140..22643700 | 19..579 | 2805 | 100 | Plus |
| 2L | 23513712 | 2L | 22643757..22643883 | 580..706 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 22675923..22676010 | 705..791 | 360 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:21:01 has no hits.
BO13048.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:12 Download gff for
BO13048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-PA | 1294..2070 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:55 Download gff for
BO13048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 1519..2296 | 14..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:45:18 Download gff for
BO13048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 1519..2296 | 14..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:45:18 Download gff for
BO13048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22643136..22643700 | 14..579 | 99 | <- | Plus |
| 2L | 22643757..22643882 | 580..705 | 100 | <- | Plus |
| 2L | 22675924..22676010 | 706..791 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:55 Download gff for
BO13048.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22536489..22536614 | 580..705 | 100 | <- | Plus |
| arm_2L | 22535868..22536432 | 14..579 | 99 | <- | Plus |
| arm_2L | 22568656..22568742 | 706..791 | 96 | | Plus |
BO13048.5prime Sequence
796 bp (709 high quality bases) assembled on 2006-05-08
> BO13048.5prime
GAAGTTATCAGTCGACATGAAGGAGTTTAGTAAAATGTTTGCGCGACGAT
ATAGTTCAGTATCAAGAGACGTAGAGGCCAGCAATCAGCGGCAGTCAGCA
GTGACCCCTGGATCTGGGTTGAGCACAGACGCAGATCCTGCGGTGTCTTG
TGCCGCTCAGGTAGCACTGCAACGAATCCAGCGCCGCAAAAGTCTCAAGG
CAAATCGTTCAATGAATCCGATAGACATACTAAGCAGCTTTTTCAACGAG
CCAATCCAAGGCAAACGGAATCGAGTTCCTACCCGTTTATTTATACTTCT
AGTCATCGGATTTTTGGCTATTATAACATCTACACTGATTAAAGTTTTGG
AACCATACGATTTGATATTTAAATGGAAATTAATCATGACAGAGGGAGGT
GAGATCTTTAATCTGTGGGCCCAGCCTCCAGTCGATCTGTATATTAAGAT
ATATTTGTTCAACATAACCAATGCCAACGCGTTTTTAGCGGGTCGCGAGC
AGCTTAGAGTCGAACAAGTTGGTCCCTATGTTTATAAGGAGATAATGACA
CATGAGAATGTAACGTTCAATTCGAATAACACCATGTCCAGCACTCCCAG
TCATCCCTTAGTCTGGCAGGAGGAAATGTCTGGGAATTGTCGTGAGGACG
ATGAGGTTGTAATGCTCAATATTGCCATGCTGGCAATATCACACCTTACT
GCCAACCAGCCGGTCTTAGTTAGAATGGCTCTGAAGACACTACTACTGAG
TACAAAGTCGGAGCCAATAGTTCGCACCACTGCCCAAGGATTCATG
BO13048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-PA | 2070 | CG40006-RA | 1..768 | 17..784 | 3790 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-RA | 2590 | CG40006-RA | 226..1005 | 17..796 | 3825 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22755855..22756124 | 286..17 | 1335 | 99.6 | Minus |
| 2L | 23513712 | 2L | 22718566..22718728 | 538..376 | 815 | 100 | Minus |
| 2L | 23513712 | 2L | 22718367..22718512 | 683..538 | 730 | 100 | Minus |
| 2L | 23513712 | 2L | 22688496..22688610 | 796..682 | 515 | 96.5 | Minus |
| 2L | 23513712 | 2L | 22718884..22718975 | 376..285 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:09:28 has no hits.
BO13048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:12 Download gff for
BO13048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-PA | 1..780 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:19:18 Download gff for
BO13048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 218..1005 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:52 Download gff for
BO13048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40006-RA | 218..1005 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:52 Download gff for
BO13048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22718567..22718727 | 377..537 | 100 | <- | Minus |
| 2L | 22718884..22718975 | 285..376 | 100 | <- | Minus |
| 2L | 22755857..22756132 | 9..284 | 98 | | Minus |
| 2L | 22688496..22688609 | 683..796 | 97 | <- | Minus |
| 2L | 22718368..22718512 | 538..682 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:19:18 Download gff for
BO13048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22611299..22611459 | 377..537 | 100 | <- | Minus |
| arm_2L | 22611616..22611707 | 285..376 | 100 | <- | Minus |
| arm_2L | 22581228..22581341 | 683..796 | 97 | <- | Minus |
| arm_2L | 22611100..22611244 | 538..682 | 100 | <- | Minus |
| arm_2L | 22648589..22648864 | 9..284 | 98 | | Minus |
BO13048.pep Sequence
Translation from 16 to 2101
> BO13048.pep
MKEFSKMFARRYSSVSRDVEASNQRQSAVTPGSGLSTDADPAVSCAAQVA
LQRIQRRKSLKANRSMNPIDILSSFFNEPIQGKRNRVPTRLFILLVIGFL
AIITSTLIKVLEPYDLIFKWKLIMTEGGEIFNLWAQPPVDLYIKIYLFNI
TNANAFLAGREQLRVEQVGPYVYKEIMTHENVTFNSNNTMSSTPSHPLVW
QEEMSGNCREDDEVVMLNIAMLAISHLTANQPFLVRMALKTLLLSTKSEP
IVRTTAKEFMFGYPSALATLGNTFLPNWISFEKVGLIDRMYDFSTDFETF
YTGVPNPALSGLYASYRGETTLPQWDGDHCSNIEFASDGTKFKSFIQPNE
TVKFFRKSMCRPINLYRVGNEKTYGSLKGYNYVFEDNAFDNGATNEANKC
FCRKGDCQPVGLIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPD
KHSSTFVIQPESGLPLSLSVKVQINMHFKDLSNFPVVSVFNHLTVPMLWF
EIMMSKLPDSLDSRFNFYLNILPLVNPLGFWSGILLGISLLGYAITKATL
HMSTFSRRAANITDVKYVRANLIQNIAGEAANHAYSPCDIKLLDDISVVR
HPVNKQTVQDSGFSSKTTYALDMEPALLDTSESSDEGRDCDIVTISRNST
STRFCADEKKCWLGDDIRVECFTESRAPQTILKREEQIHASFLDH
BO13048.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40006-PA | 689 | CG40006-PA | 1..689 | 1..689 | 3604 | 100 | Plus |
| CG10345-PA | 552 | CG10345-PA | 7..488 | 84..550 | 593 | 27.3 | Plus |
| emp-PE | 508 | CG2727-PE | 8..508 | 85..583 | 559 | 28.2 | Plus |
| emp-PD | 520 | CG2727-PD | 30..520 | 95..583 | 558 | 28.6 | Plus |
| emp-PA | 520 | CG2727-PA | 30..520 | 95..583 | 558 | 28.6 | Plus |
