Clone Sequence Records
BO13051.3prime Sequence
658 bp (591 high quality bases) assembled on 2006-05-08
> BO13051.3prime
ATGGTCTAGAAAGCTTGCAGTCTGCTGGATTGAGCTCAAAAATGCTGGAT
CCACCGATGCCACCTTGGCCGTAAGAAACGCGTGCATGCAGAACAGCAGA
CTTTGCAGGACTTGGCATTCCAGCTCCTTGGTTTCTATTGCACGGCTATC
GTGATCCTGGAAATGCAACTTCAGCTTCGATTTACCATCATCACTGGAGC
CCCTCAGCTGGGAGAATTTATACTGCCAAACTGTGGCGGATTCGGCTCCT
TCGGTTAATGAAAAACCAGCTTGCCAGTCCAGCGTGAGTCCACCACTTTT
TCCATGATGCGACACGGCAAAGGTCTTACGGCCCAGTTTGATGACACTTG
TCACAATGGCCGCATTCCAGCTGTTTTCGATTCTCAAAAGCTCCTGACGG
GTTTCCACGCTCAAATAGCGCGGTTCATGACCCGAACTTTGCAGCAGGAA
ACAATGCTGACGACTATCCACGGTCTCCGATTCCTTGACAATGCGGAACA
TGGTCTGGTAAACCTTGTAGACCACCAAAGCCTTACTAATGCCAGCCACA
TTTAGTGGTGGCGTTTCAAAGAGCATCACTTCAGTGCCTTTGAGCAGTAG
AAACCTGGGCTTGTAGCTCTGCCACGATATATTGTTGTTAATGACACCTT
CATTCACC
BO13051.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4905-PA | 1545 | Syn2-RA | 903..1542 | 658..19 | 3175 | 99.8 | Minus |
CG4905-PB | 1545 | Syn2-RB | 903..1542 | 658..19 | 3175 | 99.8 | Minus |
CG4905-PC | 1380 | Syn2-RC | 738..1377 | 658..19 | 3175 | 99.8 | Minus |
CG4905-PD | 1380 | Syn2-RD | 738..1377 | 658..19 | 3175 | 99.8 | Minus |
CG4905-PE | 1560 | Syn2-RE | 918..1557 | 658..19 | 3175 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syn2-RE | 1888 | CG4905-RE | 949..1588 | 658..19 | 3185 | 99.8 | Minus |
Syn2-RC | 1723 | CG4905-RC | 784..1423 | 658..19 | 3185 | 99.8 | Minus |
Syn2-RB | 3475 | CG4905-RB | 1076..1715 | 658..19 | 3185 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16556069..16556293 | 555..331 | 1110 | 99.6 | Minus |
2R | 25286936 | 2R | 16556353..16556557 | 330..126 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 16556617..16556726 | 128..19 | 550 | 100 | Minus |
2R | 25286936 | 2R | 16555901..16556003 | 658..556 | 515 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dm88 | 4558 | Dm88 DM88 4558bp | 2678..2789 | 505..608 | 107 | 62.8 | Plus |
BO13051.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:32 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-PB | 903..1545 | 15..658 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:34 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4905-PE | 918..1560 | 15..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:58 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RB | 1076..1718 | 15..658 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:19 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RB | 1076..1718 | 15..658 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:19 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16555901..16556003 | 556..658 | 100 | -> | Minus |
2R | 16556069..16556293 | 331..555 | 99 | -> | Minus |
2R | 16556353..16556556 | 127..330 | 100 | -> | Minus |
2R | 16556619..16556729 | 15..126 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:58 Download gff for
BO13051.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12443406..12443508 | 556..658 | 100 | -> | Minus |
arm_2R | 12443574..12443798 | 331..555 | 99 | -> | Minus |
arm_2R | 12443858..12444061 | 127..330 | 100 | -> | Minus |
arm_2R | 12444124..12444234 | 15..126 | 98 | | Minus |
BO13051.5prime Sequence
753 bp (690 high quality bases) assembled on 2006-05-08
> BO13051.5prime
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAAGCCC
GAGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGT
GACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCCTTCCAAA
TTT
BO13051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4905-PA | 1545 | Syn2-RA | 1..629 | 17..645 | 3145 | 100 | Plus |
CG4905-PB | 1545 | Syn2-RB | 1..629 | 17..645 | 3145 | 100 | Plus |
CG4905-PE | 1560 | Syn2-RE | 16..644 | 17..645 | 3145 | 100 | Plus |
CG4905-PC | 1380 | Syn2-RC | 1..497 | 17..513 | 2485 | 100 | Plus |
CG4905-PD | 1380 | Syn2-RD | 1..497 | 17..513 | 2485 | 100 | Plus |
CG4905-PA | 1545 | Syn2-RA | 629..729 | 646..746 | 505 | 100 | Plus |
CG4905-PB | 1545 | Syn2-RB | 629..729 | 646..746 | 505 | 100 | Plus |
CG4905-PE | 1560 | Syn2-RE | 644..744 | 646..746 | 505 | 100 | Plus |
CG4905-PC | 1380 | Syn2-RC | 497..564 | 679..746 | 340 | 100 | Plus |
CG4905-PD | 1380 | Syn2-RD | 497..564 | 679..746 | 340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syn2-RE | 1888 | CG4905-RE | 47..775 | 17..746 | 3625 | 99.9 | Plus |
Syn2-RB | 3475 | CG4905-RB | 174..902 | 17..746 | 3625 | 99.9 | Plus |
Syn2-RA | 3671 | CG4905-RA | 370..1098 | 17..746 | 3625 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16554966..16555253 | 225..512 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 16555319..16555483 | 513..678 | 780 | 99.4 | Plus |
2R | 25286936 | 2R | 16554757..16554909 | 75..227 | 765 | 100 | Plus |
2R | 25286936 | 2R | 16555599..16555672 | 673..746 | 355 | 98.6 | Plus |
2R | 25286936 | 2R | 16554633..16554694 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:05:23 has no hits.
BO13051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:33 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-PA | 1..735 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:35 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4905-PA | 1..735 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:25 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RA | 370..1104 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:41 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RA | 370..1104 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:41 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16554633..16554692 | 17..76 | 100 | -> | Plus |
2R | 16554759..16554908 | 77..226 | 100 | -> | Plus |
2R | 16554968..16555253 | 227..512 | 100 | -> | Plus |
2R | 16555319..16555483 | 513..678 | 99 | -> | Plus |
2R | 16555605..16555678 | 679..753 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:25 Download gff for
BO13051.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12442824..12442988 | 513..678 | 99 | -> | Plus |
arm_2R | 12443110..12443183 | 679..753 | 96 | | Plus |
arm_2R | 12442138..12442197 | 17..76 | 100 | -> | Plus |
arm_2R | 12442264..12442413 | 77..226 | 100 | -> | Plus |
arm_2R | 12442473..12442758 | 227..512 | 100 | -> | Plus |
BO13051.complete Sequence
1576 bp assembled on 2008-01-17
GenBank Submission: FJ632660
> BO13051.complete
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAGCCCG
AGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGTG
ACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCCTTCGAAGT
TCGCGGTCTGAATGGAATTTCCACAGGTGTCATACACTGTGACGAACTGG
CCATACTTAGTCAGTGGCTGAAATTGATAACAGACAATGTTGTGGGCCTG
ACGCATTTACAGATGAAGCTATATAATAGAAACTTTGCTGTGGGCGAGCG
CATTGAGTACATGGGCTGGGTGAATGAAGGTGTCATTAACAACAATATAT
CGTGGCAGAGCTACAAGCCCAGGTTTCTACTGCTCAAAGGCACTGAAGTG
ATGCTCTTTGAAACGCCACCACTAAATGTGGCTGGCATTAGTAAGGCTTT
GGTGGTCTACAAGGTCTACCAGACCATGTTCCGCATTGTCAAGGAATCGG
AGACCGTGGATAGTCGTCAGCATTGTTTCCTGCTGCAAAGTTCGGGTCAT
GAACCGCGCTATTTGAGCGTGGAAACCCGTCAGGAGCTTTTGAGAATCGA
AAACAGCTGGAATGCGGCCATTGTGACAAGTGTCATCAAACTGGGCCGTA
AGACCTTTGCCGTGTCGCATCATGGAAAAAGTGGTGGACTCACGCTGGAC
TGGCAAGCTGGTTTTTCATTAACCGAAGGAGCCGAATCCGCCACAGTTTG
GCAGTATAAATTCTCCCAGCTGAGGGGCTCCAGTGATGATGGTAAATCGA
AGCTGAAGTTGCATTTCCAGGATCACGATAGCCGTGCAATAGAAACCAAG
GAGCTGGAATGCCAAGTCCTGCAAAGTCTGCTGTTCTGCATGCACGCGTT
TCTTACGGCCAAGGTGGCATCGGTGGATCCAGCATTTTTGAGCTCAATCC
AGCAGACTGCAAGCTTTCTAGACCAT
BO13051.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syn2-RE | 1560 | CG4905-PE | 16..1557 | 17..1558 | 7710 | 100 | Plus |
Syn2-RB | 1545 | CG4905-PB | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Syn2-RA | 1545 | CG4905-PA | 1..1542 | 17..1558 | 7710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syn2-RE | 1888 | CG4905-RE | 47..1588 | 17..1558 | 7710 | 100 | Plus |
Syn2-RB | 3475 | CG4905-RB | 174..1715 | 17..1558 | 7710 | 100 | Plus |
Syn2-RA | 3671 | CG4905-RA | 370..1911 | 17..1558 | 7710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16554966..16555253 | 225..512 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 16556069..16556293 | 1022..1246 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 16556353..16556557 | 1247..1451 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 16555599..16555789 | 672..862 | 940 | 99.5 | Plus |
2R | 25286936 | 2R | 16555319..16555483 | 513..677 | 825 | 100 | Plus |
2R | 25286936 | 2R | 16555843..16556003 | 861..1021 | 805 | 100 | Plus |
2R | 25286936 | 2R | 16554757..16554909 | 75..227 | 765 | 100 | Plus |
2R | 25286936 | 2R | 16556617..16556726 | 1449..1558 | 550 | 100 | Plus |
2R | 25286936 | 2R | 16554633..16554694 | 17..78 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:55:25 has no hits.
BO13051.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:33 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RE | 16..1560 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:30 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RE | 43..1584 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:47 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RA | 370..1911 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:33 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RE | 43..1587 | 17..1562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:54 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syn2-RA | 370..1911 | 17..1560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:54 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16556069..16556293 | 1022..1246 | 100 | -> | Plus |
2R | 16556353..16556556 | 1247..1450 | 100 | -> | Plus |
2R | 16556619..16556726 | 1451..1560 | 98 | | Plus |
2R | 16554968..16555253 | 227..512 | 100 | -> | Plus |
2R | 16555319..16555483 | 513..677 | 100 | -> | Plus |
2R | 16555605..16555789 | 678..862 | 100 | -> | Plus |
2R | 16555845..16556003 | 863..1021 | 100 | -> | Plus |
2R | 16554633..16554692 | 17..76 | 100 | -> | Plus |
2R | 16554759..16554908 | 77..226 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:47 Download gff for
BO13051.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12442138..12442197 | 17..76 | 100 | -> | Plus |
arm_2R | 12442264..12442413 | 77..226 | 100 | -> | Plus |
arm_2R | 12442473..12442758 | 227..512 | 100 | -> | Plus |
arm_2R | 12442824..12442988 | 513..677 | 100 | -> | Plus |
arm_2R | 12443110..12443294 | 678..862 | 100 | -> | Plus |
arm_2R | 12443350..12443508 | 863..1021 | 100 | -> | Plus |
arm_2R | 12443574..12443798 | 1022..1246 | 100 | -> | Plus |
arm_2R | 12443858..12444061 | 1247..1450 | 100 | -> | Plus |
arm_2R | 12444124..12444231 | 1451..1560 | 98 | | Plus |
BO13051.pep Sequence
Translation from 16 to 1576
> BO13051.pep
MKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTMELLSLQ
KLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHKLPILI
SRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVVL
TVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTISRS
CSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNG
ISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGERIEYMG
WVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKALVVYKV
YQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNA
AIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFS
QLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKV
ASVDPAFLSSIQQTASFLDH
BO13051.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syn2-PE | 519 | CG4905-PE | 6..519 | 1..514 | 2653 | 100 | Plus |
Syn2-PB | 514 | CG4905-PB | 1..514 | 1..514 | 2653 | 100 | Plus |
Syn2-PA | 514 | CG4905-PA | 1..514 | 1..514 | 2653 | 100 | Plus |
Syn2-PC | 459 | CG4905-PC | 166..459 | 221..514 | 1517 | 99.7 | Plus |
Syn2-PC | 459 | CG4905-PC | 1..166 | 1..166 | 846 | 100 | Plus |
Syn1-PE | 624 | CG7152-PE | 159..623 | 69..503 | 310 | 23.7 | Plus |