Clone BO13051 Report

Search the DGRC for BO13051

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptSyn2-RA
Protein status:BO13051.pep:
Sequenced Size:1576

Clone Sequence Records

BO13051.3prime Sequence

658 bp (591 high quality bases) assembled on 2006-05-08

> BO13051.3prime
ATGGTCTAGAAAGCTTGCAGTCTGCTGGATTGAGCTCAAAAATGCTGGAT
CCACCGATGCCACCTTGGCCGTAAGAAACGCGTGCATGCAGAACAGCAGA
CTTTGCAGGACTTGGCATTCCAGCTCCTTGGTTTCTATTGCACGGCTATC
GTGATCCTGGAAATGCAACTTCAGCTTCGATTTACCATCATCACTGGAGC
CCCTCAGCTGGGAGAATTTATACTGCCAAACTGTGGCGGATTCGGCTCCT
TCGGTTAATGAAAAACCAGCTTGCCAGTCCAGCGTGAGTCCACCACTTTT
TCCATGATGCGACACGGCAAAGGTCTTACGGCCCAGTTTGATGACACTTG
TCACAATGGCCGCATTCCAGCTGTTTTCGATTCTCAAAAGCTCCTGACGG
GTTTCCACGCTCAAATAGCGCGGTTCATGACCCGAACTTTGCAGCAGGAA
ACAATGCTGACGACTATCCACGGTCTCCGATTCCTTGACAATGCGGAACA
TGGTCTGGTAAACCTTGTAGACCACCAAAGCCTTACTAATGCCAGCCACA
TTTAGTGGTGGCGTTTCAAAGAGCATCACTTCAGTGCCTTTGAGCAGTAG
AAACCTGGGCTTGTAGCTCTGCCACGATATATTGTTGTTAATGACACCTT
CATTCACC

BO13051.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4905-PA 1545 Syn2-RA 903..1542 658..19 3175 99.8 Minus
CG4905-PB 1545 Syn2-RB 903..1542 658..19 3175 99.8 Minus
CG4905-PC 1380 Syn2-RC 738..1377 658..19 3175 99.8 Minus
CG4905-PD 1380 Syn2-RD 738..1377 658..19 3175 99.8 Minus
CG4905-PE 1560 Syn2-RE 918..1557 658..19 3175 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1888 CG4905-RE 949..1588 658..19 3185 99.8 Minus
Syn2-RC 1723 CG4905-RC 784..1423 658..19 3185 99.8 Minus
Syn2-RB 3475 CG4905-RB 1076..1715 658..19 3185 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16556069..16556293 555..331 1110 99.6 Minus
2R 25286936 2R 16556353..16556557 330..126 1025 100 Minus
2R 25286936 2R 16556617..16556726 128..19 550 100 Minus
2R 25286936 2R 16555901..16556003 658..556 515 100 Minus
Blast to na_te.dros performed 2015-02-08 12:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2678..2789 505..608 107 62.8 Plus

BO13051.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:32 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-PB 903..1545 15..658 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:34 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4905-PE 918..1560 15..658 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:58 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-RB 1076..1718 15..658 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:19 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-RB 1076..1718 15..658 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:19 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16555901..16556003 556..658 100 -> Minus
2R 16556069..16556293 331..555 99 -> Minus
2R 16556353..16556556 127..330 100 -> Minus
2R 16556619..16556729 15..126 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:58 Download gff for BO13051.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12443406..12443508 556..658 100 -> Minus
arm_2R 12443574..12443798 331..555 99 -> Minus
arm_2R 12443858..12444061 127..330 100 -> Minus
arm_2R 12444124..12444234 15..126 98   Minus

BO13051.5prime Sequence

753 bp (690 high quality bases) assembled on 2006-05-08

> BO13051.5prime
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAAGCCC
GAGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGT
GACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCCTTCCAAA
TTT

BO13051.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4905-PA 1545 Syn2-RA 1..629 17..645 3145 100 Plus
CG4905-PB 1545 Syn2-RB 1..629 17..645 3145 100 Plus
CG4905-PE 1560 Syn2-RE 16..644 17..645 3145 100 Plus
CG4905-PC 1380 Syn2-RC 1..497 17..513 2485 100 Plus
CG4905-PD 1380 Syn2-RD 1..497 17..513 2485 100 Plus
CG4905-PA 1545 Syn2-RA 629..729 646..746 505 100 Plus
CG4905-PB 1545 Syn2-RB 629..729 646..746 505 100 Plus
CG4905-PE 1560 Syn2-RE 644..744 646..746 505 100 Plus
CG4905-PC 1380 Syn2-RC 497..564 679..746 340 100 Plus
CG4905-PD 1380 Syn2-RD 497..564 679..746 340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1888 CG4905-RE 47..775 17..746 3625 99.9 Plus
Syn2-RB 3475 CG4905-RB 174..902 17..746 3625 99.9 Plus
Syn2-RA 3671 CG4905-RA 370..1098 17..746 3625 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16554966..16555253 225..512 1440 100 Plus
2R 25286936 2R 16555319..16555483 513..678 780 99.4 Plus
2R 25286936 2R 16554757..16554909 75..227 765 100 Plus
2R 25286936 2R 16555599..16555672 673..746 355 98.6 Plus
2R 25286936 2R 16554633..16554694 17..78 310 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:05:23 has no hits.

BO13051.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:33 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-PA 1..735 17..753 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:35 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4905-PA 1..735 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:50:25 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-RA 370..1104 17..753 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:41 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
Syn2-RA 370..1104 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:41 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16554633..16554692 17..76 100 -> Plus
2R 16554759..16554908 77..226 100 -> Plus
2R 16554968..16555253 227..512 100 -> Plus
2R 16555319..16555483 513..678 99 -> Plus
2R 16555605..16555678 679..753 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:50:25 Download gff for BO13051.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12442824..12442988 513..678 99 -> Plus
arm_2R 12443110..12443183 679..753 96   Plus
arm_2R 12442138..12442197 17..76 100 -> Plus
arm_2R 12442264..12442413 77..226 100 -> Plus
arm_2R 12442473..12442758 227..512 100 -> Plus

BO13051.complete Sequence

1576 bp assembled on 2008-01-17

GenBank Submission: FJ632660

> BO13051.complete
GAAGTTATCAGTCGACATGAAGCTCTCTGACACCATGGCCACGCCTATAG
AAGAAAAACTCGACCAAAACCTGAAGGTGCGAACTGGAATGGTGCACGTG
AGCGATGGCAAGAGCAGACCAGAACCGCTTCGACTTAATCTTACCATGGA
GTTGCTTTCGCTGCAGAAGCTGGAAGTGGTAACACCAAGTAGTTGTCACC
CCAATGGACCACCCATGGAATCAAAGGAACGTATGGTTCAAATTACGCGC
CAAAAACAAGGCGGCCTAGGACTGAGCATAAAAGGTGGCGCCGAGCATAA
ACTACCCATTTTGATATCGCGTATCTATAAGGATCAGGCTGCGGACATAA
CGGGCCAACTATTTGTTGGCGATGCCATCATCAAGGTCAACGGAGAATAC
ATCACGGCATGTCCTCACGATGATGCCGTCAATATATTGAGAAACGCTGG
CGATATTGTTGTGCTCACTGTTAAGCATTATCGCGCAGCCACGCCTTTCC
TTCAGAAACAACTGACCAAGGACACACCCGACTCGGACAACGATGTCACA
TGTGCCGAACTGAAGGCTGACGAGGGCTACAAGTCATCCGTCAATAGTGG
AACCATCAGTCGCAGTTGTAGTCGCCCCATGTCAATTTGCTCGGAGCCCG
AGAAGCGCTGGACCGACGTGGTTGCCGTACCTCTAATGATGGCATATGTG
ACGAGGTACATCTATGGCACCGACAAGCTGCGACAAAATGCCTTCGAAGT
TCGCGGTCTGAATGGAATTTCCACAGGTGTCATACACTGTGACGAACTGG
CCATACTTAGTCAGTGGCTGAAATTGATAACAGACAATGTTGTGGGCCTG
ACGCATTTACAGATGAAGCTATATAATAGAAACTTTGCTGTGGGCGAGCG
CATTGAGTACATGGGCTGGGTGAATGAAGGTGTCATTAACAACAATATAT
CGTGGCAGAGCTACAAGCCCAGGTTTCTACTGCTCAAAGGCACTGAAGTG
ATGCTCTTTGAAACGCCACCACTAAATGTGGCTGGCATTAGTAAGGCTTT
GGTGGTCTACAAGGTCTACCAGACCATGTTCCGCATTGTCAAGGAATCGG
AGACCGTGGATAGTCGTCAGCATTGTTTCCTGCTGCAAAGTTCGGGTCAT
GAACCGCGCTATTTGAGCGTGGAAACCCGTCAGGAGCTTTTGAGAATCGA
AAACAGCTGGAATGCGGCCATTGTGACAAGTGTCATCAAACTGGGCCGTA
AGACCTTTGCCGTGTCGCATCATGGAAAAAGTGGTGGACTCACGCTGGAC
TGGCAAGCTGGTTTTTCATTAACCGAAGGAGCCGAATCCGCCACAGTTTG
GCAGTATAAATTCTCCCAGCTGAGGGGCTCCAGTGATGATGGTAAATCGA
AGCTGAAGTTGCATTTCCAGGATCACGATAGCCGTGCAATAGAAACCAAG
GAGCTGGAATGCCAAGTCCTGCAAAGTCTGCTGTTCTGCATGCACGCGTT
TCTTACGGCCAAGGTGGCATCGGTGGATCCAGCATTTTTGAGCTCAATCC
AGCAGACTGCAAGCTTTCTAGACCAT

BO13051.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1560 CG4905-PE 16..1557 17..1558 7710 100 Plus
Syn2-RB 1545 CG4905-PB 1..1542 17..1558 7710 100 Plus
Syn2-RA 1545 CG4905-PA 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-RE 1888 CG4905-RE 47..1588 17..1558 7710 100 Plus
Syn2-RB 3475 CG4905-RB 174..1715 17..1558 7710 100 Plus
Syn2-RA 3671 CG4905-RA 370..1911 17..1558 7710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16554966..16555253 225..512 1440 100 Plus
2R 25286936 2R 16556069..16556293 1022..1246 1125 100 Plus
2R 25286936 2R 16556353..16556557 1247..1451 1025 100 Plus
2R 25286936 2R 16555599..16555789 672..862 940 99.5 Plus
2R 25286936 2R 16555319..16555483 513..677 825 100 Plus
2R 25286936 2R 16555843..16556003 861..1021 805 100 Plus
2R 25286936 2R 16554757..16554909 75..227 765 100 Plus
2R 25286936 2R 16556617..16556726 1449..1558 550 100 Plus
2R 25286936 2R 16554633..16554694 17..78 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:55:25 has no hits.

BO13051.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:33 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 16..1560 17..1562 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:30 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 43..1584 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:47 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RA 370..1911 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:33 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RE 43..1587 17..1562 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:54 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
Syn2-RA 370..1911 17..1560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:54 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16556069..16556293 1022..1246 100 -> Plus
2R 16556353..16556556 1247..1450 100 -> Plus
2R 16556619..16556726 1451..1560 98   Plus
2R 16554968..16555253 227..512 100 -> Plus
2R 16555319..16555483 513..677 100 -> Plus
2R 16555605..16555789 678..862 100 -> Plus
2R 16555845..16556003 863..1021 100 -> Plus
2R 16554633..16554692 17..76 100 -> Plus
2R 16554759..16554908 77..226 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:47 Download gff for BO13051.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12442138..12442197 17..76 100 -> Plus
arm_2R 12442264..12442413 77..226 100 -> Plus
arm_2R 12442473..12442758 227..512 100 -> Plus
arm_2R 12442824..12442988 513..677 100 -> Plus
arm_2R 12443110..12443294 678..862 100 -> Plus
arm_2R 12443350..12443508 863..1021 100 -> Plus
arm_2R 12443574..12443798 1022..1246 100 -> Plus
arm_2R 12443858..12444061 1247..1450 100 -> Plus
arm_2R 12444124..12444231 1451..1560 98   Plus

BO13051.pep Sequence

Translation from 16 to 1576

> BO13051.pep
MKLSDTMATPIEEKLDQNLKVRTGMVHVSDGKSRPEPLRLNLTMELLSLQ
KLEVVTPSSCHPNGPPMESKERMVQITRQKQGGLGLSIKGGAEHKLPILI
SRIYKDQAADITGQLFVGDAIIKVNGEYITACPHDDAVNILRNAGDIVVL
TVKHYRAATPFLQKQLTKDTPDSDNDVTCAELKADEGYKSSVNSGTISRS
CSRPMSICSEPEKRWTDVVAVPLMMAYVTRYIYGTDKLRQNAFEVRGLNG
ISTGVIHCDELAILSQWLKLITDNVVGLTHLQMKLYNRNFAVGERIEYMG
WVNEGVINNNISWQSYKPRFLLLKGTEVMLFETPPLNVAGISKALVVYKV
YQTMFRIVKESETVDSRQHCFLLQSSGHEPRYLSVETRQELLRIENSWNA
AIVTSVIKLGRKTFAVSHHGKSGGLTLDWQAGFSLTEGAESATVWQYKFS
QLRGSSDDGKSKLKLHFQDHDSRAIETKELECQVLQSLLFCMHAFLTAKV
ASVDPAFLSSIQQTASFLDH

BO13051.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Syn2-PE 519 CG4905-PE 6..519 1..514 2653 100 Plus
Syn2-PB 514 CG4905-PB 1..514 1..514 2653 100 Plus
Syn2-PA 514 CG4905-PA 1..514 1..514 2653 100 Plus
Syn2-PC 459 CG4905-PC 166..459 221..514 1517 99.7 Plus
Syn2-PC 459 CG4905-PC 1..166 1..166 846 100 Plus
Syn1-PE 624 CG7152-PE 159..623 69..503 310 23.7 Plus