Clone Sequence Records
BO13056.3prime Sequence
597 bp (596 high quality bases) assembled on 2006-05-08
> BO13056.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCGCGAAGGCGGCGAACATGGCCATAC
CCAGGAAGCCGGCGCCCGCTCCTAGCTTATAGTTGCCCGGCGTTCGGGTC
CACATTTCGCGCAGTATGGCAAAGTTGCTCGGCTGCAGGCGGTGGAAGGA
CTCGCGCTGCCGGAAGCGCAAGAAGTATGCCTCCACCTGCGGCAGCTTTC
CGAAGGTCCAGAACTGATTCTCGAATCCCAGCTGATACAGTCGATGCAGC
AGCAATCCCAGCGAGATATCCGCCACGCTCAGTTCGTCGCCGGTCAGCCA
CTCAACGCGTGGCGCCTGGGCGGTTAGCTCCTGCTCCACATAGAGCAGAA
AGTGCCGCACGGCATCCAGAACCTTCTGGAATTCCTCGCGGGACGAGGCC
AGCTCGTGGCGGCGCAACTGTATGTCCAGCTTGTGCTGCAGCGCTGCTTT
TTTGGTCGCCTGTTCGTCCACCGAGTGGCGCAGCAGATCCAGCACCTTTT
CATTGTTTTTCAGGCAGGACTGGCGCACGGGTCCGATGAAGGGCGCCTTG
GGCACCAGCTTCAGATCGTCGTGTATGAAGGAGCCCAGGCTGAGTGT
BO13056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 984 | CG4623-RA | 403..981 | 597..19 | 2895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RB | 1594 | CG4623-RB | 752..1330 | 597..19 | 2895 | 100 | Minus |
CG4623-RA | 1597 | CG4623-RA | 755..1333 | 597..19 | 2895 | 100 | Minus |
CG4623-RC | 1511 | CG4623-RC | 755..1301 | 597..51 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143563..5144053 | 509..19 | 2455 | 100 | Minus |
3L | 28110227 | 3L | 5143410..5143497 | 597..510 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:07:19 has no hits.
BO13056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:41 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 403..984 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:42 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 403..984 | 16..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:42 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 755..1338 | 13..597 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:18 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 755..1338 | 13..597 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:18 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5143410..5143497 | 510..597 | 100 | -> | Minus |
3L | 5143563..5144058 | 13..509 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:42 Download gff for
BO13056.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5136510..5136597 | 510..597 | 100 | -> | Minus |
arm_3L | 5136663..5137158 | 13..509 | 99 | | Minus |
BO13056.5prime Sequence
630 bp (629 high quality bases) assembled on 2006-05-08
> BO13056.5prime
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGA
BO13056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 984 | CG4623-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RC | 1511 | CG4623-RC | 353..966 | 17..630 | 3070 | 100 | Plus |
CG4623-RA | 1597 | CG4623-RA | 353..966 | 17..630 | 3070 | 100 | Plus |
CG4623-RB | 1594 | CG4623-RB | 353..963 | 17..630 | 3015 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143073..5143265 | 140..332 | 965 | 100 | Plus |
3L | 28110227 | 3L | 5143323..5143497 | 332..506 | 875 | 100 | Plus |
3L | 28110227 | 3L | 5142305..5142430 | 17..142 | 630 | 100 | Plus |
3L | 28110227 | 3L | 5143563..5143686 | 507..630 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:03:46 has no hits.
BO13056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:42 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 1..613 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:44 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-PA | 1..613 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:07 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..965 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:16 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..965 | 17..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:16 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5142305..5142427 | 17..139 | 100 | -> | Plus |
3L | 5143073..5143265 | 140..332 | 100 | -> | Plus |
3L | 5143324..5143497 | 333..506 | 100 | -> | Plus |
3L | 5143563..5143685 | 507..629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:07 Download gff for
BO13056.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5135405..5135527 | 17..139 | 100 | -> | Plus |
arm_3L | 5136173..5136365 | 140..332 | 100 | -> | Plus |
arm_3L | 5136424..5136597 | 333..506 | 100 | -> | Plus |
arm_3L | 5136663..5136785 | 507..629 | 100 | | Plus |
BO13056.complete Sequence
1015 bp assembled on 2006-10-11
GenBank Submission: FJ638712
> BO13056.complete
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAG
GCGCCACGCGTTGAGTGGCTGACCGGCGACGAACTGAGCGTGGCGGATAT
CTCGCTGGGATTGCTGCTGCATCGACTGTATCAGCTGGGATTCGAGAATC
AGTTCTGGACCTTCGGAAAGCTGCCGCAGGTGGAGGCATACTTCTTGCGC
TTCCGGCAGCGCGAGTCCTTCCACCGCCTGCAGCCGAGCAACTTTGCCAT
ACTGCGCGAAATGTGGACCCGAACGCCGGGCAACTATAAGCTAGGAGCGG
GCGCCGGCTTCCTGGGTATGGCCATGTTCGCCGCCTTCGCGCACAAGGCA
AGCTTTCTAGACCAT
BO13056.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RA | 984 | CG4623-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
CG4623-RB | 981 | CG4623-PB | 1..978 | 17..997 | 4825 | 99.7 | Plus |
CG4623-RC | 963 | CG4623-PC | 1..949 | 17..965 | 4745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RA | 1597 | CG4623-RA | 353..1333 | 17..997 | 4905 | 100 | Plus |
CG4623-RB | 1594 | CG4623-RB | 353..1330 | 17..997 | 4825 | 99.7 | Plus |
CG4623-RC | 1511 | CG4623-RC | 353..1301 | 17..965 | 4745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143563..5144053 | 507..997 | 2455 | 100 | Plus |
3L | 28110227 | 3L | 5143073..5143265 | 140..332 | 965 | 100 | Plus |
3L | 28110227 | 3L | 5143323..5143497 | 332..506 | 875 | 100 | Plus |
3L | 28110227 | 3L | 5142305..5142430 | 17..142 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:25:44 has no hits.
BO13056.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:12 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 1..984 | 17..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:19 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 351..1336 | 17..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:49 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1333 | 17..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:12 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 351..1336 | 17..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:18 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1333 | 17..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:18 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5142305..5142427 | 17..139 | 100 | -> | Plus |
3L | 5143073..5143265 | 140..332 | 100 | -> | Plus |
3L | 5143324..5143497 | 333..506 | 100 | -> | Plus |
3L | 5143563..5144053 | 507..999 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:49 Download gff for
BO13056.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5135405..5135527 | 17..139 | 100 | -> | Plus |
arm_3L | 5136173..5136365 | 140..332 | 100 | -> | Plus |
arm_3L | 5136424..5136597 | 333..506 | 100 | -> | Plus |
arm_3L | 5136663..5137153 | 507..999 | 99 | | Plus |
BO13056.pep Sequence
Translation from 16 to 1015
> BO13056.pep
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHKASFLDH
BO13056.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-PA | 327 | CG4623-PA | 1..327 | 1..327 | 1713 | 100 | Plus |
CG4623-PB | 326 | CG4623-PB | 1..326 | 1..327 | 1695 | 99.7 | Plus |
CG4623-PC | 320 | CG4623-PC | 1..316 | 1..316 | 1656 | 100 | Plus |