Clone BO13056 Report

Search the DGRC for BO13056

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG4623-RA
Protein status:BO13056.pep: validated full length
Sequenced Size:1015

Clone Sequence Records

BO13056.3prime Sequence

597 bp (596 high quality bases) assembled on 2006-05-08

> BO13056.3prime
ATGGTCTAGAAAGCTTGCCTTGTGCGCGAAGGCGGCGAACATGGCCATAC
CCAGGAAGCCGGCGCCCGCTCCTAGCTTATAGTTGCCCGGCGTTCGGGTC
CACATTTCGCGCAGTATGGCAAAGTTGCTCGGCTGCAGGCGGTGGAAGGA
CTCGCGCTGCCGGAAGCGCAAGAAGTATGCCTCCACCTGCGGCAGCTTTC
CGAAGGTCCAGAACTGATTCTCGAATCCCAGCTGATACAGTCGATGCAGC
AGCAATCCCAGCGAGATATCCGCCACGCTCAGTTCGTCGCCGGTCAGCCA
CTCAACGCGTGGCGCCTGGGCGGTTAGCTCCTGCTCCACATAGAGCAGAA
AGTGCCGCACGGCATCCAGAACCTTCTGGAATTCCTCGCGGGACGAGGCC
AGCTCGTGGCGGCGCAACTGTATGTCCAGCTTGTGCTGCAGCGCTGCTTT
TTTGGTCGCCTGTTCGTCCACCGAGTGGCGCAGCAGATCCAGCACCTTTT
CATTGTTTTTCAGGCAGGACTGGCGCACGGGTCCGATGAAGGGCGCCTTG
GGCACCAGCTTCAGATCGTCGTGTATGAAGGAGCCCAGGCTGAGTGT

BO13056.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 984 CG4623-RA 403..981 597..19 2895 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RB 1594 CG4623-RB 752..1330 597..19 2895 100 Minus
CG4623-RA 1597 CG4623-RA 755..1333 597..19 2895 100 Minus
CG4623-RC 1511 CG4623-RC 755..1301 597..51 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144053 509..19 2455 100 Minus
3L 28110227 3L 5143410..5143497 597..510 440 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:07:19 has no hits.

BO13056.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:41 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 403..984 16..597 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:42 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 403..984 16..597 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:23:42 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 755..1338 13..597 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:18 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 755..1338 13..597 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:18 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5143410..5143497 510..597 100 -> Minus
3L 5143563..5144058 13..509 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:23:42 Download gff for BO13056.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5136510..5136597 510..597 100 -> Minus
arm_3L 5136663..5137158 13..509 99   Minus

BO13056.5prime Sequence

630 bp (629 high quality bases) assembled on 2006-05-08

> BO13056.5prime
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGA

BO13056.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 984 CG4623-RA 1..614 17..630 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RC 1511 CG4623-RC 353..966 17..630 3070 100 Plus
CG4623-RA 1597 CG4623-RA 353..966 17..630 3070 100 Plus
CG4623-RB 1594 CG4623-RB 353..963 17..630 3015 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143073..5143265 140..332 965 100 Plus
3L 28110227 3L 5143323..5143497 332..506 875 100 Plus
3L 28110227 3L 5142305..5142430 17..142 630 100 Plus
3L 28110227 3L 5143563..5143686 507..630 620 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:03:46 has no hits.

BO13056.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:42 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 1..613 17..629 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:44 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-PA 1..613 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:07 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..965 17..629 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:45:16 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..965 17..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:45:16 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5142305..5142427 17..139 100 -> Plus
3L 5143073..5143265 140..332 100 -> Plus
3L 5143324..5143497 333..506 100 -> Plus
3L 5143563..5143685 507..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:07 Download gff for BO13056.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5135405..5135527 17..139 100 -> Plus
arm_3L 5136173..5136365 140..332 100 -> Plus
arm_3L 5136424..5136597 333..506 100 -> Plus
arm_3L 5136663..5136785 507..629 100   Plus

BO13056.complete Sequence

1015 bp assembled on 2006-10-11

GenBank Submission: FJ638712

> BO13056.complete
GAAGTTATCAGTCGACATGAGCGAGCAGACAAAGGAAATCGAAGCTCTGC
CGCCCACCTTGCAGGACTTCAAGGCTCCCGATCTGCCGGCCAATAAGCCA
GTGCTCTTCTTCCATCCGTACAACTTCCATGCGCAAAAAGTTCTTATGGT
CTTCTACGAGAAGAAGATCGACTTCTTTCCCTATGTGGTGGACCTGTGCA
ATGGCGAGCAGTACTCCAATTGGTTCCTAAACCTCAATCCCAAGGGCGAT
GTGCCAGTGCTCCAGGATGGCGCCCTCGTCATTCCCAGCTCGACGCACAT
CATCAACTATGTGGAGAGCAAATTTCGCGGTGATCGATCGCTGAAGCCAG
CGCACAACTCCAAGGAATTCGATCAAATGCTGATCTTCGAGCAGGCAATG
GCCCGCCTTCCAGTGGGAACACTCAGCCTGGGCTCCTTCATACACGACGA
TCTGAAGCTGGTGCCCAAGGCGCCCTTCATCGGACCCGTGCGCCAGTCCT
GCCTGAAAAACAATGAAAAGGTGCTGGATCTGCTGCGCCACTCGGTGGAC
GAACAGGCGACCAAAAAAGCAGCGCTGCAGCACAAGCTGGACATACAGTT
GCGCCGCCACGAGCTGGCCTCGTCCCGCGAGGAATTCCAGAAGGTTCTGG
ATGCCGTGCGGCACTTTCTGCTCTATGTGGAGCAGGAGCTAACCGCCCAG
GCGCCACGCGTTGAGTGGCTGACCGGCGACGAACTGAGCGTGGCGGATAT
CTCGCTGGGATTGCTGCTGCATCGACTGTATCAGCTGGGATTCGAGAATC
AGTTCTGGACCTTCGGAAAGCTGCCGCAGGTGGAGGCATACTTCTTGCGC
TTCCGGCAGCGCGAGTCCTTCCACCGCCTGCAGCCGAGCAACTTTGCCAT
ACTGCGCGAAATGTGGACCCGAACGCCGGGCAACTATAAGCTAGGAGCGG
GCGCCGGCTTCCTGGGTATGGCCATGTTCGCCGCCTTCGCGCACAAGGCA
AGCTTTCTAGACCAT

BO13056.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:25:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 984 CG4623-PA 1..981 17..997 4905 100 Plus
CG4623-RB 981 CG4623-PB 1..978 17..997 4825 99.7 Plus
CG4623-RC 963 CG4623-PC 1..949 17..965 4745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:25:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 1597 CG4623-RA 353..1333 17..997 4905 100 Plus
CG4623-RB 1594 CG4623-RB 353..1330 17..997 4825 99.7 Plus
CG4623-RC 1511 CG4623-RC 353..1301 17..965 4745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144053 507..997 2455 100 Plus
3L 28110227 3L 5143073..5143265 140..332 965 100 Plus
3L 28110227 3L 5143323..5143497 332..506 875 100 Plus
3L 28110227 3L 5142305..5142430 17..142 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:25:44 has no hits.

BO13056.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:12 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 1..984 17..1000 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:19 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 351..1336 17..1003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:49 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1333 17..999 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:12 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 351..1336 17..1003 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:18 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1333 17..999 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:18 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5142305..5142427 17..139 100 -> Plus
3L 5143073..5143265 140..332 100 -> Plus
3L 5143324..5143497 333..506 100 -> Plus
3L 5143563..5144053 507..999 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:49 Download gff for BO13056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5135405..5135527 17..139 100 -> Plus
arm_3L 5136173..5136365 140..332 100 -> Plus
arm_3L 5136424..5136597 333..506 100 -> Plus
arm_3L 5136663..5137153 507..999 99   Plus

BO13056.pep Sequence

Translation from 16 to 1015

> BO13056.pep
MSEQTKEIEALPPTLQDFKAPDLPANKPVLFFHPYNFHAQKVLMVFYEKK
IDFFPYVVDLCNGEQYSNWFLNLNPKGDVPVLQDGALVIPSSTHIINYVE
SKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKLVP
KAPFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHEL
ASSREEFQKVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLL
LHRLYQLGFENQFWTFGKLPQVEAYFLRFRQRESFHRLQPSNFAILREMW
TRTPGNYKLGAGAGFLGMAMFAAFAHKASFLDH

BO13056.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-PA 327 CG4623-PA 1..327 1..327 1713 100 Plus
CG4623-PB 326 CG4623-PB 1..326 1..327 1695 99.7 Plus
CG4623-PC 320 CG4623-PC 1..316 1..316 1656 100 Plus