Clone BO13057 Report

Search the DGRC for BO13057

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptGapdh1-RA
Protein status:BO13057.pep:
Sequenced Size:1030

Clone Sequence Records

BO13057.3prime Sequence

577 bp (575 high quality bases) assembled on 2006-05-08

> BO13057.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGCTCTGCATATACTTGATCAGGTCGA
TGACGCGGTTGGAGTAACCGAACTCGTTGTCGTACCACGAGATTAGCTTG
ACGAACTTATCGTTCAGCGAAATGCCAGCCTTGGCGTCGAACACAGACGA
ATGGGTGTCGCTGAAGAAGTCGGTGGAGACCACCTCCTCATCGGTGTAGC
CCAGGATTCCCTTCAGGGGTCCCTTGGAGGCCTCCTCGACCTTAGCCTTG
ATTTCGTCATAGGTGGCTCCCTTGCCCAAGCGGACGGTAAGATCCACAAC
GGAGACATTGGGCGTGGGCACGCGGAAAGCCATGCCGGTCAGCTTGCCGT
TCAGGGCGGGGATGACCTTGCCCACAGCCTTGGCGGCTCCGGTGGCGGCC
GGGATGATGTTCTGGGCGGCGCCACGTCCATCGCGCCACAGTTTGCCAGA
GGGACCGTCGACGGTCTTCTGGGTGGCAGTGGTGGCGTGCACGGTGGTCA
TCAGACCCTCGACGATCTCGAAGTTGTCATTGATGACCTTGGCCAGGGGA
GCCAGGCAGTTGGTGGTGCACGAGGCG

BO13057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12055-PA 999 Gapdh1-RA 438..996 577..19 2795 100 Minus
CG12055-PB 999 Gapdh1-RB 438..996 577..19 2795 100 Minus
CG8893-PA 999 Gapdh2-RA 727..995 288..20 620 89.2 Minus
CG8893-PB 999 Gapdh2-RB 727..995 288..20 620 89.2 Minus
CG8893-PA 999 Gapdh2-RA 442..557 573..458 380 93.1 Minus
CG8893-PB 999 Gapdh2-RB 442..557 573..458 380 93.1 Minus
CG8893-PA 999 Gapdh2-RA 625..707 390..308 165 87.9 Minus
CG8893-PB 999 Gapdh2-RB 625..707 390..308 165 87.9 Minus
CG8893-PA 999 Gapdh2-RA 575..611 440..404 135 94.5 Minus
CG8893-PB 999 Gapdh2-RB 575..611 440..404 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 1330 CG12055-RB 548..1106 577..19 2795 100 Minus
Gapdh1-RA 1480 CG12055-RA 698..1256 577..19 2795 100 Minus
Gapdh2-RC 1377 CG8893-RC 489..1046 577..20 1785 88 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7792125..7792683 19..577 2795 100 Plus
X 23542271 X 15868773..15869330 577..20 1785 88 Minus
2R 25286936 2R 16959364..16959654 286..576 330 74.2 Plus
Blast to na_te.dros performed on 2015-02-10 16:15:10 has no hits.

BO13057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:43 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12055-PB 438..999 15..577 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:46 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12055-PB 438..999 15..577 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:33 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 698..1262 12..577 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:13 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 698..1262 12..577 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:13 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7792119..7792683 12..577 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:33 Download gff for BO13057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3679624..3680188 12..577 99   Plus

BO13057.5prime Sequence

748 bp (685 high quality bases) assembled on 2006-05-08

> BO13057.5prime
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCCTGGCAAACTGTGGCGCG
ATGGACGTGGCGCCGCCCAAAACATCATCCCGGCCGCCACCGGAGCCGCC
AAGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGAACGGCAT
GGCTTTCCGCGTGCCCCCGCCCAATGTCTCCGTTGTGGATCTTACCGT

BO13057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12055-PA 999 Gapdh1-RA 1..566 17..582 2830 100 Plus
CG12055-PB 999 Gapdh1-RB 1..566 17..582 2830 100 Plus
CG8893-PA 999 Gapdh2-RA 277..557 293..573 830 91.8 Plus
CG8893-PB 999 Gapdh2-RB 277..557 293..573 830 91.8 Plus
CG12055-PA 999 Gapdh1-RA 566..731 583..748 755 98.1 Plus
CG12055-PB 999 Gapdh1-RB 566..731 583..748 755 98.1 Plus
CG8893-PA 999 Gapdh2-RA 1..269 17..285 695 90.3 Plus
CG8893-PB 999 Gapdh2-RB 1..269 17..285 695 90.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 1330 CG12055-RB 110..841 16..748 3595 99.5 Plus
Gapdh1-RA 1480 CG12055-RA 260..991 16..748 3595 99.5 Plus
Gapdh2-RC 1377 CG8893-RC 51..782 16..748 2380 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7792390..7793121 748..16 3570 99.5 Minus
X 23542271 X 15868335..15869066 16..748 2355 88.4 Plus
2R 25286936 2R 16959364..16959756 746..353 360 73.4 Minus
Blast to na_te.dros performed on 2015-02-09 09:00:13 has no hits.

BO13057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:45 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12055-PB 1..731 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:47 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12055-PB 1..731 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:07 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 255..991 8..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:54 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 255..991 8..748 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:54 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7792390..7793126 8..748 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:07 Download gff for BO13057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3679895..3680631 8..748 99   Minus

BO13057.complete Sequence

1030 bp assembled on 2006-12-18

GenBank Submission: FJ632661

> BO13057.complete
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGA
TGGACGTGGCGCCGCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCA
AGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATG
GCTTTCCGCGTGCCCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCG
CTTGGGCAAGGGAGCCACCTATGACGAAATCAAGGCTAAGGTCGAGGAGG
CCTCCAAGGGACCCCTGAAGGGAATCCTGGGCTACACCGATGAGGAGGTG
GTCTCCACCGACTTCTTCAGCGACACCCATTCGTCTGTGTTCGACGCCAA
GGCTGGCATTTCGCTGAACGATAAGTTCGTCAAGCTAATCTCGTGGTACG
ACAACGAGTTCGGTTACTCCAACCGCGTCATCGACCTGATCAAGTATATG
CAGAGCAAGGACGCAAGCTTTCTAGACCAT

BO13057.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 999 CG12055-PB 1..996 17..1012 4980 100 Plus
Gapdh1-RA 999 CG12055-PA 1..996 17..1012 4980 100 Plus
Gapdh2-RC 999 CG8893-PC 1..995 17..1011 3310 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-RB 1330 CG12055-RB 110..1106 16..1012 4985 100 Plus
Gapdh1-RA 1480 CG12055-RA 260..1256 16..1012 4985 100 Plus
Gapdh2-RC 1377 CG8893-RC 51..1046 16..1011 3315 88.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7792125..7793121 1012..16 4985 100 Minus
X 23542271 X 15868335..15869330 16..1011 3315 88.9 Plus
2R 25286936 2R 16959364..16959756 745..353 405 73.5 Minus
Blast to na_te.dros performed on 2014-11-27 20:21:20 has no hits.

BO13057.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:12 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RB 1..999 17..1016 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:51 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RB 63..1058 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:04 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 261..1256 17..1014 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:12 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RB 57..1064 8..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:57 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
Gapdh1-RA 261..1256 17..1014 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:57 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7792123..7793120 17..1014 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:04 Download gff for BO13057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3679628..3680625 17..1014 99   Minus

BO13057.pep Sequence

Translation from 16 to 1030

> BO13057.pep
MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKDASFLDH

BO13057.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Gapdh1-PB 332 CG12055-PB 1..332 1..332 1697 100 Plus
Gapdh1-PA 332 CG12055-PA 1..332 1..332 1697 100 Plus
Gapdh2-PC 332 CG8893-PC 1..332 1..332 1665 97.3 Plus
Gapdh2-PA 332 CG8893-PA 1..332 1..332 1665 97.3 Plus
CG9010-PA 343 CG9010-PA 1..333 1..332 1114 65.2 Plus