Clone Sequence Records
BO13057.3prime Sequence
577 bp (575 high quality bases) assembled on 2006-05-08
> BO13057.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGCTCTGCATATACTTGATCAGGTCGA
TGACGCGGTTGGAGTAACCGAACTCGTTGTCGTACCACGAGATTAGCTTG
ACGAACTTATCGTTCAGCGAAATGCCAGCCTTGGCGTCGAACACAGACGA
ATGGGTGTCGCTGAAGAAGTCGGTGGAGACCACCTCCTCATCGGTGTAGC
CCAGGATTCCCTTCAGGGGTCCCTTGGAGGCCTCCTCGACCTTAGCCTTG
ATTTCGTCATAGGTGGCTCCCTTGCCCAAGCGGACGGTAAGATCCACAAC
GGAGACATTGGGCGTGGGCACGCGGAAAGCCATGCCGGTCAGCTTGCCGT
TCAGGGCGGGGATGACCTTGCCCACAGCCTTGGCGGCTCCGGTGGCGGCC
GGGATGATGTTCTGGGCGGCGCCACGTCCATCGCGCCACAGTTTGCCAGA
GGGACCGTCGACGGTCTTCTGGGTGGCAGTGGTGGCGTGCACGGTGGTCA
TCAGACCCTCGACGATCTCGAAGTTGTCATTGATGACCTTGGCCAGGGGA
GCCAGGCAGTTGGTGGTGCACGAGGCG
BO13057.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12055-PA | 999 | Gapdh1-RA | 438..996 | 577..19 | 2795 | 100 | Minus |
CG12055-PB | 999 | Gapdh1-RB | 438..996 | 577..19 | 2795 | 100 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 727..995 | 288..20 | 620 | 89.2 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 727..995 | 288..20 | 620 | 89.2 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 442..557 | 573..458 | 380 | 93.1 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 442..557 | 573..458 | 380 | 93.1 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 625..707 | 390..308 | 165 | 87.9 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 625..707 | 390..308 | 165 | 87.9 | Minus |
CG8893-PA | 999 | Gapdh2-RA | 575..611 | 440..404 | 135 | 94.5 | Minus |
CG8893-PB | 999 | Gapdh2-RB | 575..611 | 440..404 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 1330 | CG12055-RB | 548..1106 | 577..19 | 2795 | 100 | Minus |
Gapdh1-RA | 1480 | CG12055-RA | 698..1256 | 577..19 | 2795 | 100 | Minus |
Gapdh2-RC | 1377 | CG8893-RC | 489..1046 | 577..20 | 1785 | 88 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7792125..7792683 | 19..577 | 2795 | 100 | Plus |
X | 23542271 | X | 15868773..15869330 | 577..20 | 1785 | 88 | Minus |
2R | 25286936 | 2R | 16959364..16959654 | 286..576 | 330 | 74.2 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:15:10 has no hits.
BO13057.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:43 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12055-PB | 438..999 | 15..577 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:46 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12055-PB | 438..999 | 15..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:33 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 698..1262 | 12..577 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:13 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 698..1262 | 12..577 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:13 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7792119..7792683 | 12..577 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:33 Download gff for
BO13057.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3679624..3680188 | 12..577 | 99 | | Plus |
BO13057.5prime Sequence
748 bp (685 high quality bases) assembled on 2006-05-08
> BO13057.5prime
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCCTGGCAAACTGTGGCGCG
ATGGACGTGGCGCCGCCCAAAACATCATCCCGGCCGCCACCGGAGCCGCC
AAGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGAACGGCAT
GGCTTTCCGCGTGCCCCCGCCCAATGTCTCCGTTGTGGATCTTACCGT
BO13057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12055-PA | 999 | Gapdh1-RA | 1..566 | 17..582 | 2830 | 100 | Plus |
CG12055-PB | 999 | Gapdh1-RB | 1..566 | 17..582 | 2830 | 100 | Plus |
CG8893-PA | 999 | Gapdh2-RA | 277..557 | 293..573 | 830 | 91.8 | Plus |
CG8893-PB | 999 | Gapdh2-RB | 277..557 | 293..573 | 830 | 91.8 | Plus |
CG12055-PA | 999 | Gapdh1-RA | 566..731 | 583..748 | 755 | 98.1 | Plus |
CG12055-PB | 999 | Gapdh1-RB | 566..731 | 583..748 | 755 | 98.1 | Plus |
CG8893-PA | 999 | Gapdh2-RA | 1..269 | 17..285 | 695 | 90.3 | Plus |
CG8893-PB | 999 | Gapdh2-RB | 1..269 | 17..285 | 695 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 1330 | CG12055-RB | 110..841 | 16..748 | 3595 | 99.5 | Plus |
Gapdh1-RA | 1480 | CG12055-RA | 260..991 | 16..748 | 3595 | 99.5 | Plus |
Gapdh2-RC | 1377 | CG8893-RC | 51..782 | 16..748 | 2380 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7792390..7793121 | 748..16 | 3570 | 99.5 | Minus |
X | 23542271 | X | 15868335..15869066 | 16..748 | 2355 | 88.4 | Plus |
2R | 25286936 | 2R | 16959364..16959756 | 746..353 | 360 | 73.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:00:13 has no hits.
BO13057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:45 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12055-PB | 1..731 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:47 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12055-PB | 1..731 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:15:07 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 255..991 | 8..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:54 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 255..991 | 8..748 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:54 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7792390..7793126 | 8..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:15:07 Download gff for
BO13057.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3679895..3680631 | 8..748 | 99 | | Minus |
BO13057.complete Sequence
1030 bp assembled on 2006-12-18
GenBank Submission: FJ632661
> BO13057.complete
GAAGTTATCAGTCGACATGTCGAAGATCGGAATTAACGGATTTGGCCGCA
TCGGCCGCTTGGTGCTCCGCGCCGCCATCGATAAGGGCGCCTCCGTGGTG
GCCGTCAACGATCCCTTCATCGATGTCAACTACATGGTTTACCTGTTTAA
ATTCGACTCGACTCACGGTCGTTTCAAGGGCACCGTTGCGGCTGAGGGCG
GATTCCTGGTGGTGAACGGCCAGAAGATCACCGTGTTCAGCGAGCGCGAC
CCGGCCAACATCAACTGGGCCAGTGCTGGAGCCGAGTATGTGGTGGAGTC
CACCGGAGTGTTCACCACCATTGACAAGGCGTCCACCCACTTGAAGGGCG
GCGCCAAGAAGGTCATCATCTCGGCCCCATCCGCCGATGCGCCCATGTTC
GTGTGCGGCGTTAACCTGGACGCCTACAGCCCCGACATGAAGGTGGTCTC
CAACGCCTCGTGCACCACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCA
ATGACAACTTCGAGATCGTCGAGGGTCTGATGACCACCGTGCACGCCACC
ACTGCCACCCAGAAGACCGTCGACGGTCCCTCTGGCAAACTGTGGCGCGA
TGGACGTGGCGCCGCCCAGAACATCATCCCGGCCGCCACCGGAGCCGCCA
AGGCTGTGGGCAAGGTCATCCCCGCCCTGAACGGCAAGCTGACCGGCATG
GCTTTCCGCGTGCCCACGCCCAATGTCTCCGTTGTGGATCTTACCGTCCG
CTTGGGCAAGGGAGCCACCTATGACGAAATCAAGGCTAAGGTCGAGGAGG
CCTCCAAGGGACCCCTGAAGGGAATCCTGGGCTACACCGATGAGGAGGTG
GTCTCCACCGACTTCTTCAGCGACACCCATTCGTCTGTGTTCGACGCCAA
GGCTGGCATTTCGCTGAACGATAAGTTCGTCAAGCTAATCTCGTGGTACG
ACAACGAGTTCGGTTACTCCAACCGCGTCATCGACCTGATCAAGTATATG
CAGAGCAAGGACGCAAGCTTTCTAGACCAT
BO13057.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 999 | CG12055-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
Gapdh1-RA | 999 | CG12055-PA | 1..996 | 17..1012 | 4980 | 100 | Plus |
Gapdh2-RC | 999 | CG8893-PC | 1..995 | 17..1011 | 3310 | 88.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-RB | 1330 | CG12055-RB | 110..1106 | 16..1012 | 4985 | 100 | Plus |
Gapdh1-RA | 1480 | CG12055-RA | 260..1256 | 16..1012 | 4985 | 100 | Plus |
Gapdh2-RC | 1377 | CG8893-RC | 51..1046 | 16..1011 | 3315 | 88.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7792125..7793121 | 1012..16 | 4985 | 100 | Minus |
X | 23542271 | X | 15868335..15869330 | 16..1011 | 3315 | 88.9 | Plus |
2R | 25286936 | 2R | 16959364..16959756 | 745..353 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:20 has no hits.
BO13057.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:12 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RB | 1..999 | 17..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:28:51 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RB | 63..1058 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:04 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 261..1256 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:12 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RB | 57..1064 | 8..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:57 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gapdh1-RA | 261..1256 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:57 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7792123..7793120 | 17..1014 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:04 Download gff for
BO13057.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3679628..3680625 | 17..1014 | 99 | | Minus |
BO13057.pep Sequence
Translation from 16 to 1030
> BO13057.pep
MSKIGINGFGRIGRLVLRAAIDKGASVVAVNDPFIDVNYMVYLFKFDSTH
GRFKGTVAAEGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFT
TIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDMKVVSNASCT
TNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAA
QNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGA
TYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISL
NDKFVKLISWYDNEFGYSNRVIDLIKYMQSKDASFLDH
BO13057.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gapdh1-PB | 332 | CG12055-PB | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh1-PA | 332 | CG12055-PA | 1..332 | 1..332 | 1697 | 100 | Plus |
Gapdh2-PC | 332 | CG8893-PC | 1..332 | 1..332 | 1665 | 97.3 | Plus |
Gapdh2-PA | 332 | CG8893-PA | 1..332 | 1..332 | 1665 | 97.3 | Plus |
CG9010-PA | 343 | CG9010-PA | 1..333 | 1..332 | 1114 | 65.2 | Plus |