Clone BO13058 Report

Search the DGRC for BO13058

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptGstE2-RA
Protein status:BO13058.pep: Imported from assembly
Sequenced Size:698

Clone Sequence Records

BO13058.3prime Sequence

633 bp (631 high quality bases) assembled on 2006-05-08

> BO13058.3prime
ATGGTCTAGAAAGCTTGGCTTGCTCCAGATTTAATACGGGTTTCAATAAA
TTGATATACTTCTTCAAGCCCCGCAGATTGTCTTCCTCATAGTGGGGCAA
CTTAGAGAGTCGTTCGAACCAAGCAGCCACCTTTGGATACTTTAACTCAT
CCAGGTCAAGAACAGCGGCCAGCGAGGATGCAGTAGCTCCGCAGCATAAA
TCAGCTATGGTCAGTTGCGACCCGGTCAAATAGGGATTATCCCCTAGAAA
GTTCTCCAAATGGCCATATGCATCTTTAATGTTGTCCACCTTCTCCTTGG
GTACCAGGCTTACTTGGCGAAGAAAATAGGGTATACTGACATTTCGCAGC
GACATAAACAGAATGCTGGCATCAAAGAACAAACGCTGATCCACCTGGGC
GCGCAACACCAGATCCCTGGGATATAGCTCATCCGAATTGGCATACTTGT
CCACCAGGTAGCATACAATAGCATGTGAATCCCAGATAAGGGCACCATTA
TCTTCGAGGAGTGGTACGGTGTGCTGCGGGTTCTTTTTGAGGAACGCATC
CTTAAAGTGATCTCCTGCCAGTAGATCCATTTCCTTGTATTCGTAGTCCA
AGTTTAAGGCCCGCAAGGTCAGCTTGCAAGCGC

BO13058.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17523-PA 666 GstE2-RA 50..663 633..20 3020 99.6 Minus
CG5164-PA 675 GstE1-RA 230..277 456..409 165 93.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 88..701 633..20 3040 99.7 Minus
GstE1-RA 831 CG5164-RA 125..359 600..366 290 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399573..18400186 633..20 3040 99.7 Minus
2R 25286936 2R 18398517..18398751 600..366 290 74.9 Minus
Blast to na_te.dros performed on 2015-02-08 12:49:16 has no hits.

BO13058.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:46 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-PA 50..666 19..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:48 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17523-PA 50..666 19..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:42 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 88..701 20..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:05 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 88..701 20..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:05 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18399573..18400186 20..633 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:42 Download gff for BO13058.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287078..14287691 20..633 99   Minus

BO13058.5prime Sequence

632 bp (631 high quality bases) assembled on 2006-05-08

> BO13058.5prime
GAAGTTATCAGTCGACATGTCGGATAAATTGGTTTTGTATGGCATGGATA
TTAGTCCTCCTGTTCGCGCTTGCAAGCTGACCTTGCGGGCCTTAAACTTG
GACTACGAATACAAGGAAATGGATCTACTGGCAGGAGATCACTTTAAGGA
TGCGTTCCTCAAAAAGAACCCGCAGCACACCGTACCACTCCTCGAAGATA
ATGGTGCCCTTATCTGGGATTCACATGCTATTGTATGCTACCTGGTGGAC
AAGTATGCCAATTCGGATGAGCTATATCCCAGGGATCTGGTGTTGCGCGC
CCAGGTGGATCAGCGTTTGTTCTTTGATGCCAGCATTCTGTTTATGTCGC
TGCGAAATGTCAGTATACCCTATTTTCTTCGCCAAGTAAGCCTGGTACCC
AAGGAGAAGGTGGACAACATTAAAGATGCATATGGCCATTTGGAGAACTT
TCTAGGGGATAATCCCTATTTGACCGGGTCGCAACTGACCATAGCTGATT
TATGCTGCGGAGCTACTGCATCCTCGCTGGCCGCTGTTCTTGACCTGGAT
GAGTTAAAGTATCCAAAGGTGGCTGCTTGGTTCGAACGACTCTCTAAGTT
GCCCCCACTATGAGGAAGACAATCTGCGGGGC

BO13058.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17523-PA 666 GstE2-RA 1..589 17..605 2895 99.6 Plus
CG5164-PA 675 GstE1-RA 230..277 243..290 165 93.7 Plus
CG17523-PA 666 GstE2-RA 586..615 603..632 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 38..653 16..632 3030 99.5 Plus
GstE1-RA 831 CG5164-RA 125..359 99..333 290 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399523..18400138 16..632 3005 99.5 Plus
2R 25286936 2R 18398517..18398751 99..333 290 74.9 Plus
Blast to na_te.dros performed on 2015-02-10 22:33:16 has no hits.

BO13058.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:47 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:50 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17523-PA 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:59:08 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 31..653 7..632 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:50 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 31..653 7..632 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:50 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18399516..18400138 7..632 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:59:08 Download gff for BO13058.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287021..14287643 7..632 98   Plus

BO13058.complete Sequence

698 bp assembled on 2008-08-15

> BO13058.complete
GAAGTTATCAGTCGACATGTCGGATAAATTGGTTTTGTATGGCATGGATA
TTAGTCCTCCTGTTCGCGCTTGCAAGCTGACCTTGCGGGCCTTAAACTTG
GACTACGAATACAAGGAAATGGATCTACTGGCAGGAGATCACTTTAAGGA
TGCGTTCCTCAAAAAGAACCCGCAGCACACCGTACCACTCCTCGAAGATA
ATGGTGCCCTTATCTGGGATTCACATGCTATTGTATGCTACCTGGTGGAC
AAGTATGCCAATTCGGATGAGCTATATCCCAGGGATCTGGTGTTGCGCGC
CCAGGTGGATCAGCGTTTGTTCTTTGATGCCAGCATTCTGTTTATGTCGC
TGCGAAATGTCAGTATACCCTATTTTCTTCGCCAAGTAAGCCTGGTACCC
AAGGAGAAGGTGGACAACATTAAAGATGCATATGGCCATTTGGAGAACTT
TCTAGGGGATAATCCCTATTTGACCGGGTCGCAACTGACCATAGCTGATT
TATGCTGCGGAGCTACTGCATCCTCGCTGGCCGCTGTTCTTGACCTGGAT
GAGTTAAAGTATCCAAAGGTGGCTGCTTGGTTCGAACGACTCTCTAAGTT
GCCCCACTATGAGGAAGACAATCTGCGGGGCTTGAAGAAGTATATCAATT
TATTGAAACCCGTATTAAATCTGGAGCAAGCCAAGCTTTCTAGACCAT

BO13058.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:13:32
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 666 CG17523-PA 1..663 17..679 3285 99.7 Plus
GstE1-RA 675 CG5164-PA 86..320 99..333 290 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:13:33
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-RA 890 CG17523-RA 38..701 16..679 3290 99.7 Plus
GstE1-RA 831 CG5164-RA 125..359 99..333 290 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18399523..18400186 16..679 3290 99.7 Plus
2R 25286936 2R 18398517..18398751 99..333 290 74.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:13:31 has no hits.

BO13058.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:32 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 29..699 7..679 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:54 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 39..701 17..682 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:30 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 37..699 17..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:35 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
GstE2-RA 39..701 17..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:35 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18399524..18400186 17..682 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:54 Download gff for BO13058.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14287029..14287691 17..682 99   Plus

BO13058.pep Sequence

Translation from 16 to 697

> BO13058.pep
MSDKLVLYGMDISPPVRACKLTLRALNLDYEYKEMDLLAGDHFKDAFLKK
NPQHTVPLLEDNGALIWDSHAIVCYLVDKYANSDELYPRDLVLRAQVDQR
LFFDASILFMSLRNVSIPYFLRQVSLVPKEKVDNIKDAYGHLENFLGDNP
YLTGSQLTIADLCCGATASSLAAVLDLDELKYPKVAAWFERLSKLPHYEE
DNLRGLKKYINLLKPVLNLEQAKLSRP

BO13058.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
GstE2-PA 221 CG17523-PA 1..221 1..221 1152 100 Plus
GstE1-PA 224 CG5164-PA 3..215 2..214 652 56.3 Plus
GstE7-PA 223 CG17531-PA 3..214 4..214 582 51.4 Plus
GstE10-PB 240 CG17522-PB 4..225 5..224 571 51.8 Plus
GstE10-PA 240 CG17522-PA 4..225 5..224 571 51.8 Plus