Clone Sequence Records
BO13060.3prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13060.3prime
ATGGTCTAGAAAGCTTGCCCAAGGTCGCCACACCACCATTCGCTGCTGCA
CCAGCTCCGCCAACTGGCGCTGCCTCTGCCGCTTTCTCTCGAAGATCTGG
TGGCGAATCTTCAGCAGGATGCTATCACGTGGCGCCTGCCCAGTTGCTCC
GTGGGATTTGGCGGGCGAGGATTGCTGCAGCTGCTCTATGAACTCGAGGT
CCATCTCGTGCGGCGGCGCTGCAAAGTGCTCCTTCTCCGGCATCTGCTCC
TGATCGTTATCCTGATCGATGGCCAGATTGCATTGGTACTGCAGCTTGAA
ACGCTGACGCTTTTTTCGCGCCGCATTCTCGGCTAGAAATCTGCACAGCT
GCTGTAATTGCTGCTCGGCCAGCTCCTCCTTATCCTTGTCGATGTGATTC
TGGACCTGGTTCTGATCCTGATCCGGCTGCTGGTCCCGCTCCCGATCCCG
ATCCCGCTCCTCCACCATGTGATCCTCAAGGCGGCGCTGCTGCTGGCGCT
GCTTGATGGCCGCCTGCACCTTGCACCTGGTGGCCGAGCTCAGGCTGAGA
TCCATGCTGCGTTGCTGCTTCAGTATCTTGTAGATGACGCCCATGTCAAC
TGATAACT
BO13060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15064-PA | 579 | Him-RA | 1..576 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 108..683 | 594..19 | 2880 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18210212..18210504 | 311..19 | 1465 | 100 | Minus |
| X | 23542271 | X | 18209534..18209818 | 594..310 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:08:05 has no hits.
BO13060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:49 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:54 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15064-PA | 1..579 | 18..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:57:52 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..687 | 13..594 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:13 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..687 | 13..594 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:13 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18210214..18210508 | 13..309 | 98 | | Minus |
| X | 18209534..18209818 | 310..594 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:57:52 Download gff for
BO13060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103567..18103851 | 310..594 | 100 | -> | Minus |
| arm_X | 18104247..18104541 | 13..309 | 98 | | Minus |
BO13060.5prime Sequence
608 bp (607 high quality bases) assembled on 2006-05-08
> BO13060.5prime
GAAGTTATCAGTCGACATGGGCGTCATCTACAAGATACTGAAGCAGCAAC
GCAGCATGGATCTCAGCCTGAGCTCGGCCACCAGGTGCAAGGTGCAGGCG
GCCATCAAGCAGCGCCAGCAGCAGCGCCGCCTTGAGGATCACATGGTGGA
GGAGCGGGATCGGGATCGGGAGCGGGACCAGCAGCCGGATCAGGATCAGA
ACCAGGTCCAGAATCACATCGACAAGGATAAGGAGGAGCTGGCCGAGCAG
CAATTACAGCAGCTGTGCAGATTTCTAGCCGAGAATGCGGCGCGAAAAAA
GCGTCAGCGTTTCAAGCTGCAGTACCAATGCAATCTGGCCATCGATCAGG
ATAACGATCAGGAGCAGATGCCGGAGAAGGAGCACTTTGCAGCGCCGCCG
CACGAGATGGACCTCGAGTTCATAGAGCAGCTGCAGCAATCCTCGCCCGC
CAAATCCCACGGAGCAACTGGGCAGGCGCCACGTGATAGCATCCTGCTGA
AGATTCGCCACCAGATCTTCGAGAGAAAGCGGCAGAGGCAGCGCCAGTTG
GCGGAGCTGGTGCAGCAGCGAATGGTGGTGTGGCGACCTTGGGCAAGCTT
TCTAGACC
BO13060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15064-PA | 579 | Him-RA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 108..683 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18210212..18210504 | 300..592 | 1465 | 100 | Plus |
| X | 23542271 | X | 18209534..18209818 | 17..301 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:52:16 has no hits.
BO13060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:50 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:55 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15064-PA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:08 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 105..687 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:07:01 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 105..687 | 12..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:07:01 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18209531..18209818 | 12..301 | 99 | -> | Plus |
| X | 18210214..18210508 | 302..598 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:08 Download gff for
BO13060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103564..18103851 | 12..301 | 99 | -> | Plus |
| arm_X | 18104247..18104541 | 302..598 | 98 | | Plus |
BO13060.complete Sequence
610 bp assembled on 2006-10-11
GenBank Submission: FJ632662
> BO13060.complete
GAAGTTATCAGTCGACATGGGCGTCATCTACAAGATACTGAAGCAGCAAC
GCAGCATGGATCTCAGCCTGAGCTCGGCCACCAGGTGCAAGGTGCAGGCG
GCCATCAAGCAGCGCCAGCAGCAGCGCCGCCTTGAGGATCACATGGTGGA
GGAGCGGGATCGGGATCGGGAGCGGGACCAGCAGCCGGATCAGGATCAGA
ACCAGGTCCAGAATCACATCGACAAGGATAAGGAGGAGCTGGCCGAGCAG
CAATTACAGCAGCTGTGCAGATTTCTAGCCGAGAATGCGGCGCGAAAAAA
GCGTCAGCGTTTCAAGCTGCAGTACCAATGCAATCTGGCCATCGATCAGG
ATAACGATCAGGAGCAGATGCCGGAGAAGGAGCACTTTGCAGCGCCGCCG
CACGAGATGGACCTCGAGTTCATAGAGCAGCTGCAGCAATCCTCGCCCGC
CAAATCCCACGGAGCAACTGGGCAGGCGCCACGTGATAGCATCCTGCTGA
AGATTCGCCACCAGATCTTCGAGAGAAAGCGGCAGAGGCAGCGCCAGTTG
GCGGAGCTGGTGCAGCAGCGAATGGTGGTGTGGCGACCTTGGGCAAGCTT
TCTAGACCAT
BO13060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 579 | CG15064-PA | 1..576 | 17..592 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-RA | 920 | CG15064-RA | 108..683 | 17..592 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18210212..18210504 | 300..592 | 1465 | 100 | Plus |
| X | 23542271 | X | 18209534..18209818 | 17..301 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:20:08 has no hits.
BO13060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:13 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 1..579 | 17..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:21 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 101..683 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:13 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..683 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:13 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 101..683 | 12..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:40 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Him-RA | 108..683 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:40 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18209534..18209818 | 17..301 | 100 | -> | Plus |
| X | 18210214..18210504 | 302..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:13 Download gff for
BO13060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18103567..18103851 | 17..301 | 100 | -> | Plus |
| arm_X | 18104247..18104537 | 302..594 | 99 | | Plus |
BO13060.pep Sequence
Translation from 16 to 610
> BO13060.pep
MGVIYKILKQQRSMDLSLSSATRCKVQAAIKQRQQQRRLEDHMVEERDRD
RERDQQPDQDQNQVQNHIDKDKEELAEQQLQQLCRFLAENAARKKRQRFK
LQYQCNLAIDQDNDQEQMPEKEHFAAPPHEMDLEFIEQLQQSSPAKSHGA
TGQAPRDSILLKIRHQIFERKRQRQRQLAELVQQRMVVWRPWASFLDH
BO13060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Him-PA | 192 | CG15064-PA | 1..192 | 1..192 | 993 | 100 | Plus |
