Clone Sequence Records
BO13062.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13062.3prime
ATGGTCTAGAAAGCTTGCCTTTCGATAGGTGTGAAAACTGCTCGGCAACA
GATTAAAGATTGAGGTGCACATGACGGGATCGTCACTCTGCAAAAGTTCC
TGCTTTTCAGCAATCCTCGCATCGATCGCCTGGGCCACATATATGGGTAT
ATCCGCGTTGGCAAACTCGCGTATAAACTGACGACAAACGCCGCAAGGAG
TGGTGAATACATTAGGTTCGTAGGCCAAAACAGCACCTGCCAAAAATTCG
GTGGCTCCTTCGCTTACGGCCTTAGCAATGGCCGTTCTCTCGGCACAAGA
GCCCGGCGTAAAGGCGGCGTTTTCCACATTGCAGCCAGTGAAGATCTTTC
CATCGACCTTGGCCCGAAAAGCAGCCCCAACTTTGAAGCCACTATATGGA
ACGTATGCCCGCTGGCGCACTTGAAAAGCAGCTGTCAGAAGTTCTTGAAC
CGACGGATCCAGACTGCCGAAGGTCACAACCTCCTCATTCTTTTCTGGAC
GTGCGAAATTTTTTGTCAGATGTGTCATGTCGACTGATAACT
BO13062.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PA | 513 | CG8353-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..883 | 528..19 | 2550 | 100 | Minus |
CG8353-RA | 751 | CG8353-RA | 114..623 | 528..19 | 2550 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215111 | 459..19 | 2205 | 100 | Minus |
2L | 23513712 | 2L | 8214418..8214487 | 528..459 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:51:03 has no hits.
BO13062.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:51 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:57 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:56 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 15..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:18 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 15..528 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:18 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 459..528 | 100 | -> | Minus |
2L | 8214672..8215114 | 15..458 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:56 Download gff for
BO13062.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 459..528 | 100 | -> | Minus |
arm_2L | 8214672..8215114 | 15..458 | 99 | | Minus |
BO13062.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13062.5prime
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGGCAAGCTTTCTAGACC
BO13062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PA | 513 | CG8353-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..883 | 17..526 | 2550 | 100 | Plus |
CG8353-RA | 751 | CG8353-RA | 114..623 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215111 | 86..526 | 2205 | 100 | Plus |
2L | 23513712 | 2L | 8214418..8214487 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:02:51 has no hits.
BO13062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:52 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:58 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-PA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:05 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:55 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..530 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:55 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
2L | 8214672..8215114 | 87..530 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:05 Download gff for
BO13062.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
arm_2L | 8214672..8215114 | 87..530 | 99 | | Plus |
BO13062.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ632663
> BO13062.complete
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGGCAAGCTTTCTAGACCAT
BO13062.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 513 | CG8353-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CG8353-RA | 513 | CG8353-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-RB | 1011 | CG8353-RB | 374..883 | 17..526 | 2550 | 100 | Plus |
CG8353-RA | 751 | CG8353-RA | 114..623 | 17..526 | 2550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8214671..8215111 | 86..526 | 2205 | 100 | Plus |
2L | 23513712 | 2L | 8214418..8214487 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:15:45 has no hits.
BO13062.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:17 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 1..513 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:17 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:16 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..623 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:17 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..626 | 17..530 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:14 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8353-RA | 114..623 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:14 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
2L | 8214672..8215111 | 87..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:16 Download gff for
BO13062.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8214418..8214487 | 17..86 | 100 | -> | Plus |
arm_2L | 8214672..8215111 | 87..528 | 99 | | Plus |
BO13062.pep Sequence
Translation from 16 to 544
> BO13062.pep
MTHLTKNFARPEKNEEVVTFGSLDPSVQELLTAAFQVRQRAYVPYSGFKV
GAAFRAKVDGKIFTGCNVENAAFTPGSCAERTAIAKAVSEGATEFLAGAV
LAYEPNVFTTPCGVCRQFIREFANADIPIYVAQAIDARIAEKQELLQSDD
PVMCTSIFNLLPSSFHTYRKASFLDH
BO13062.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8353-PB | 170 | CG8353-PB | 1..170 | 1..170 | 875 | 100 | Plus |
CG8353-PA | 170 | CG8353-PA | 1..170 | 1..170 | 875 | 100 | Plus |
CG8349-PA | 264 | CG8349-PA | 100..263 | 5..168 | 416 | 51.5 | Plus |
CG8360-PC | 158 | CG8360-PC | 1..152 | 1..165 | 379 | 49.4 | Plus |
CG8360-PA | 158 | CG8360-PA | 1..152 | 1..165 | 379 | 49.4 | Plus |