Clone BO13062 Report

Search the DGRC for BO13062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG8353-RA
Protein status:BO13062.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO13062.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13062.3prime
ATGGTCTAGAAAGCTTGCCTTTCGATAGGTGTGAAAACTGCTCGGCAACA
GATTAAAGATTGAGGTGCACATGACGGGATCGTCACTCTGCAAAAGTTCC
TGCTTTTCAGCAATCCTCGCATCGATCGCCTGGGCCACATATATGGGTAT
ATCCGCGTTGGCAAACTCGCGTATAAACTGACGACAAACGCCGCAAGGAG
TGGTGAATACATTAGGTTCGTAGGCCAAAACAGCACCTGCCAAAAATTCG
GTGGCTCCTTCGCTTACGGCCTTAGCAATGGCCGTTCTCTCGGCACAAGA
GCCCGGCGTAAAGGCGGCGTTTTCCACATTGCAGCCAGTGAAGATCTTTC
CATCGACCTTGGCCCGAAAAGCAGCCCCAACTTTGAAGCCACTATATGGA
ACGTATGCCCGCTGGCGCACTTGAAAAGCAGCTGTCAGAAGTTCTTGAAC
CGACGGATCCAGACTGCCGAAGGTCACAACCTCCTCATTCTTTTCTGGAC
GTGCGAAATTTTTTGTCAGATGTGTCATGTCGACTGATAACT

BO13062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PA 513 CG8353-RA 1..510 528..19 2550 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..883 528..19 2550 100 Minus
CG8353-RA 751 CG8353-RA 114..623 528..19 2550 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215111 459..19 2205 100 Minus
2L 23513712 2L 8214418..8214487 528..459 350 100 Minus
Blast to na_te.dros performed on 2015-02-08 12:51:03 has no hits.

BO13062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:51 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:57 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 15..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:40:56 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 15..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:24:18 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 15..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:24:18 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 459..528 100 -> Minus
2L 8214672..8215114 15..458 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:40:56 Download gff for BO13062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 459..528 100 -> Minus
arm_2L 8214672..8215114 15..458 99   Minus

BO13062.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13062.5prime
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGGCAAGCTTTCTAGACC

BO13062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PA 513 CG8353-RA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..883 17..526 2550 100 Plus
CG8353-RA 751 CG8353-RA 114..623 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215111 86..526 2205 100 Plus
2L 23513712 2L 8214418..8214487 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:02:51 has no hits.

BO13062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:52 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:35:58 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-PA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:38:05 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:55 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..530 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:55 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 17..86 100 -> Plus
2L 8214672..8215114 87..530 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:38:05 Download gff for BO13062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 17..86 100 -> Plus
arm_2L 8214672..8215114 87..530 99   Plus

BO13062.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ632663

> BO13062.complete
GAAGTTATCAGTCGACATGACACATCTGACAAAAAATTTCGCACGTCCAG
AAAAGAATGAGGAGGTTGTGACCTTCGGCAGTCTGGATCCGTCGGTTCAA
GAACTTCTGACAGCTGCTTTTCAAGTGCGCCAGCGGGCATACGTTCCATA
TAGTGGCTTCAAAGTTGGGGCTGCTTTTCGGGCCAAGGTCGATGGAAAGA
TCTTCACTGGCTGCAATGTGGAAAACGCCGCCTTTACGCCGGGCTCTTGT
GCCGAGAGAACGGCCATTGCTAAGGCCGTAAGCGAAGGAGCCACCGAATT
TTTGGCAGGTGCTGTTTTGGCCTACGAACCTAATGTATTCACCACTCCTT
GCGGCGTTTGTCGTCAGTTTATACGCGAGTTTGCCAACGCGGATATACCC
ATATATGTGGCCCAGGCGATCGATGCGAGGATTGCTGAAAAGCAGGAACT
TTTGCAGAGTGACGATCCCGTCATGTGCACCTCAATCTTTAATCTGTTGC
CGAGCAGTTTTCACACCTATCGAAAGGCAAGCTTTCTAGACCAT

BO13062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:15:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 513 CG8353-PB 1..510 17..526 2550 100 Plus
CG8353-RA 513 CG8353-PA 1..510 17..526 2550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:15:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-RB 1011 CG8353-RB 374..883 17..526 2550 100 Plus
CG8353-RA 751 CG8353-RA 114..623 17..526 2550 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8214671..8215111 86..526 2205 100 Plus
2L 23513712 2L 8214418..8214487 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:15:45 has no hits.

BO13062.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:52:17 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 1..513 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:24:17 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..530 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:16 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..623 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:52:17 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..626 17..530 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:14 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
CG8353-RA 114..623 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:14 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8214418..8214487 17..86 100 -> Plus
2L 8214672..8215111 87..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:16 Download gff for BO13062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8214418..8214487 17..86 100 -> Plus
arm_2L 8214672..8215111 87..528 99   Plus

BO13062.pep Sequence

Translation from 16 to 544

> BO13062.pep
MTHLTKNFARPEKNEEVVTFGSLDPSVQELLTAAFQVRQRAYVPYSGFKV
GAAFRAKVDGKIFTGCNVENAAFTPGSCAERTAIAKAVSEGATEFLAGAV
LAYEPNVFTTPCGVCRQFIREFANADIPIYVAQAIDARIAEKQELLQSDD
PVMCTSIFNLLPSSFHTYRKASFLDH

BO13062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8353-PB 170 CG8353-PB 1..170 1..170 875 100 Plus
CG8353-PA 170 CG8353-PA 1..170 1..170 875 100 Plus
CG8349-PA 264 CG8349-PA 100..263 5..168 416 51.5 Plus
CG8360-PC 158 CG8360-PC 1..152 1..165 379 49.4 Plus
CG8360-PA 158 CG8360-PA 1..152 1..165 379 49.4 Plus