Clone Sequence Records
BO13064.complete Sequence
1540 bp assembled on 2010-06-25
GenBank Submission: KX795980
> BO13064.complete
GAAGTTATCAGTCGACATGTTTGTGCTCATAGCTGTGCTGTTTGTTAACG
CTTGCCTAGCGGGCACCATTCCGGCTACGCCGGAGAACATAACCGTTACG
TTCCTCACGCCCACGGCGGTCCGGGTGTCGTGGCAGACGCAAATCGATCT
GAAGGCACATCCCATCGAGAAGTACATCGTGACGTACAAGCCAACGGACG
ACAGTTACAGGGTTGTACAGGACGTCGCCGGCAGCAGCGAGGCCATTGTC
CTGGATCGCCTGCTGCCCAGCACACAGTACTCCCTCGTTGTGACGGCCAT
CTGGCAGGGCAAGAAGTACCGCAGCCGCGGCCAGATCAAGTTCAAAACGC
TGGATCTGCCCAAGAACACCTCGCAGCAGGATTTTCCGCCGGGCATCTAC
GGCAATAGCAGCAACGGTGCTCGCAATGTCACCAATAATGCCAGCATCTT
TGGCGACGACGTGACCTCCACGGCCACCAACACCCTGACACATGGCACAA
CCAGGGAATTGCCCACGATCCGCGGCGTGGAGATCGGCATCGTCCTAATC
GTACTGATGGTCTGGGCCGGAGCAATCGCCCTGTTCTTCAACCGGTGGGG
CAAGATCCGGATGCTGTTGCCCTATCAGCCGGACTACAAGCACGAGCAGC
TGAAGGTGCCAGGTACGGGCGTGTGCAGCGCCAGCGGATGCAATGGACAG
CACTCGCACCAGCACATCCACATGCTGGCCGAGGAGCACTCCACCTCCAT
TTCGGAACGCTGCACCCGCAGCCGCATCAACTCGGCCATATTCGTGTCAT
CGGAGGGCCGAGGTTTTGACTCCATAGAGTTCCTGCGGCGCCACGGATCC
CAGAGTGTGCTCTGCAGGAAAGCCAAGAGTGCCGAGAACATAACGGATAA
TGGAAGAAGGAAGAGCCTACGGCCGTGGCGCACAGACGATGAATCCTGCA
AGCAGCAGCACCTCTCGCAGGACAGCAACGACATCGAGCTGAAGGAGTGC
GGCGGCGCTGGAGGAGAGCTACTCCGGCTGCCGGTCATCCACGATGGCAA
GCAGTCGCCCACAGCCGTGACTAGTCTGCTAGCGCGATCGGCAGCGATAA
CCACGGCCAACATGATTGTGGGCAGCATCTCGCTGGAGGCACCACCACCT
TACATGCAGGACGACGAGGGCGATACGCTGTCCACGGCGGCACTCATCCA
TAGCGATGCAGCTGCCGTGGTACACGAGTCGCAGGACTCGGCGGAGACGG
TCGAGGAGCTTGTCCATGTGCCGCTACTGGCCAGTGCCACTGCCACGGCC
AGCGTTTCGGCCTCATCCTCGCCCAGCATTGCCATCGAGGCCAAGCCGCG
CGTCCTGGTGCACCAACGATCCTCGACCGCCTCCTCGTCGCCGCACAGCA
GCCCCAAGAACCTGGGCAGCCTGGGACTGAAGATCGTCAAGCCCAAGATC
AGTGCCGTGCCAATGGTTTCCGTGTCCGGACCCTCGCCGCCCATTGAAAA
GCCGCCGCTGGCCGAGTGCTTGGCAAGCTTTCTAGACCAT
BO13064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:52:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33143-RC | 1509 | CG33143-PC | 1..1506 | 17..1522 | 7515 | 99.9 | Plus |
| CG33143-RD | 1620 | CG33143-PD | 805..1617 | 710..1522 | 4050 | 99.9 | Plus |
| CG33143-RF | 2274 | CG33143-PF | 1462..2271 | 713..1522 | 4035 | 99.9 | Plus |
| CG33143-RD | 1620 | CG33143-PD | 1..690 | 17..712 | 3355 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33143-RC | 4786 | CG33143-RC | 1703..3209 | 16..1522 | 7520 | 99.9 | Plus |
| CG33143-RD | 4897 | CG33143-RD | 2508..3320 | 710..1522 | 4050 | 99.9 | Plus |
| CG33143-RF | 5551 | CG33143-RF | 3165..3974 | 713..1522 | 4035 | 99.9 | Plus |
| CG33143-RD | 4897 | CG33143-RD | 1703..2393 | 16..712 | 3360 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22631895..22632507 | 910..1522 | 3050 | 99.8 | Plus |
| 2R | 25286936 | 2R | 22631628..22631828 | 710..910 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 22628362..22628557 | 517..712 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 22628012..22628176 | 353..517 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 22627798..22627948 | 203..353 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 22622158..22622300 | 62..204 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 22621113..22621160 | 16..63 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:52:57 has no hits.
BO13064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 11:04:21 Download gff for
BO13064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1708..3207 | 23..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:16 Download gff for
BO13064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1710..3209 | 23..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:22 Download gff for
BO13064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1710..3209 | 23..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:22 Download gff for
BO13064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22631631..22631828 | 713..910 | 100 | -> | Plus |
| 2R | 22621120..22621159 | 23..62 | 100 | -> | Plus |
| 2R | 22622159..22622300 | 63..204 | 100 | -> | Plus |
| 2R | 22627800..22627948 | 205..353 | 100 | -> | Plus |
| 2R | 22628013..22628176 | 354..517 | 100 | -> | Plus |
| 2R | 22628363..22628557 | 518..712 | 100 | -> | Plus |
| 2R | 22631896..22632507 | 911..1524 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:16 Download gff for
BO13064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18519136..18519333 | 713..910 | 100 | -> | Plus |
| arm_2R | 18508625..18508664 | 23..62 | 100 | -> | Plus |
| arm_2R | 18509664..18509805 | 63..204 | 100 | -> | Plus |
| arm_2R | 18515305..18515453 | 205..353 | 100 | -> | Plus |
| arm_2R | 18515518..18515681 | 354..517 | 100 | -> | Plus |
| arm_2R | 18515868..18516062 | 518..712 | 100 | -> | Plus |
| arm_2R | 18519401..18520012 | 911..1524 | 99 | | Plus |
BO13064.5prime Sequence
774 bp (581 high quality bases) assembled on 2010-02-20
> BO13064.5prime
TGTTTGTTAACGCTTGCCTAGCGGGCACCATTCCGGCTACGCCGGAGAAC
ATAACCGTTACGTTCCTCACGCCCACGGCGGTCCGGGTGTCGTGGCAGAC
GCAAATCGATCTGAAGGCACATCCCATCGAGAAGTACATCGTGACGTACA
AGCCAACGGACGACAGTTACAGGGTTGTACAGGACGTCGCCGGCAGCAGC
GAGGCCATTGTCCTGGATCGCCTGCTGCCCAGCACACAGTACTCCCTCGT
TGTGACGGCCATCTGGCAGGGCAAGAAGTACCGCAGCCGCGGCCAGATCA
AGTTCAAAACGCTGGATCTGCCCAAGAACACCTCGCAGCAGGATTTTCCG
CCGGGCTTCTACGGCAATAGCAGCAACGGTGCTCGCAATGTCACCAATAA
TGCCAGCATCTTTGGCGACGACGTGACCTCCACGGCCACCAACACCCTGA
CACATGGCACAACCAGGGAATTGCCCACGATCCGCGGCGTGGAGATCGGC
ATCGTCCTAATCGTACTGATGGTCTGGGCCGGAGCAATCGCCCCTGTTCT
TCAACCGGTGGGGCAAGATCCGGATGCTGTTTGCCCTATCAGCCGGACTA
CAAGCACAAGCAGCTGAAGGTGCCAGGTACGGGCGTGTGCATCGCCAGCG
GAAGCAATGGAAAGCACTCGCACCAGCATATCCACATGCTGGGCGAAGGA
CCACTCCCCCTCTCTTTTCGAACGCTGCACCCCCCCCCGGCCATCACTCC
GGCCAATTTCGTGTCATCGGAAGG
BO13064.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33143-RC | 4786 | CG33143-RC | 1726..2491 | 1..771 | 3425 | 96.9 | Plus |
| CG33143-RF | 5551 | CG33143-RF | 1726..2393 | 1..676 | 3155 | 98.1 | Plus |
| CG33143-RE | 4828 | CG33143-RE | 1726..2393 | 1..676 | 3155 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 01:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22628362..22628557 | 479..676 | 830 | 97 | Plus |
| 2R | 25286936 | 2R | 22628012..22628176 | 315..479 | 810 | 99.4 | Plus |
| 2R | 25286936 | 2R | 22627798..22627948 | 165..315 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 22622158..22622300 | 24..166 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 01:48:35 has no hits.
BO13064.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 03:28:01 Download gff for
BO13064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1724..2491 | 1..774 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 08:59:34 Download gff for
BO13064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1726..2493 | 1..774 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:55:58 Download gff for
BO13064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33143-RC | 1726..2493 | 1..774 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 03:55:58 Download gff for
BO13064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22621136..22621159 | 1..24 | 100 | -> | Plus |
| 2R | 22622159..22622300 | 25..166 | 100 | -> | Plus |
| 2R | 22627800..22627948 | 167..315 | 100 | -> | Plus |
| 2R | 22628013..22628176 | 316..479 | 99 | -> | Plus |
| 2R | 22628363..22628557 | 480..676 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 08:59:34 Download gff for
BO13064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18508641..18508664 | 1..24 | 100 | -> | Plus |
| arm_2R | 18509664..18509805 | 25..166 | 100 | -> | Plus |
| arm_2R | 18515305..18515453 | 167..315 | 100 | -> | Plus |
| arm_2R | 18515518..18515681 | 316..479 | 99 | -> | Plus |
| arm_2R | 18515868..18516062 | 480..676 | 96 | -> | Plus |
BO13064.pep Sequence
Translation from 16 to 1540
> BO13064.pep
MFVLIAVLFVNACLAGTIPATPENITVTFLTPTAVRVSWQTQIDLKAHPI
EKYIVTYKPTDDSYRVVQDVAGSSEAIVLDRLLPSTQYSLVVTAIWQGKK
YRSRGQIKFKTLDLPKNTSQQDFPPGIYGNSSNGARNVTNNASIFGDDVT
STATNTLTHGTTRELPTIRGVEIGIVLIVLMVWAGAIALFFNRWGKIRML
LPYQPDYKHEQLKVPGTGVCSASGCNGQHSHQHIHMLAEEHSTSISERCT
RSRINSAIFVSSEGRGFDSIEFLRRHGSQSVLCRKAKSAENITDNGRRKS
LRPWRTDDESCKQQHLSQDSNDIELKECGGAGGELLRLPVIHDGKQSPTA
VTSLLARSAAITTANMIVGSISLEAPPPYMQDDEGDTLSTAALIHSDAAA
VVHESQDSAETVEELVHVPLLASATATASVSASSSPSIAIEAKPRVLVHQ
RSSTASSSPHSSPKNLGSLGLKIVKPKISAVPMVSVSGPSPPIEKPPLAE
CLASFLDH
BO13064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33143-PC | 502 | CG33143-PC | 1..502 | 1..502 | 2566 | 100 | Plus |
| CG33143-PE | 516 | CG33143-PE | 1..516 | 1..502 | 2515 | 96.5 | Plus |
| CG33143-PD | 539 | CG33143-PD | 1..539 | 1..502 | 2492 | 92.4 | Plus |
| CG33143-PF | 757 | CG33143-PF | 488..757 | 233..502 | 1355 | 100 | Plus |
| CG33143-PF | 757 | CG33143-PF | 1..244 | 1..246 | 1195 | 94.3 | Plus |
| CG12541-PE | 263 | CG12541-PE | 71..162 | 124..210 | 162 | 42.4 | Plus |
