Clone BO13065 Report

Search the DGRC for BO13065

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG9095-RA
Protein status:BO13065.pep:
Sequenced Size:2899

Clone Sequence Records

BO13065.3prime Sequence

686 bp (508 high quality bases) assembled on 2006-05-08

> BO13065.3prime
ATGGTCTAGAAAGCTTGCATAGTGGCCGCCACCACCGCCTCCGCCGCCAC
CACCACCACCACTATGTCGGTGGTGCTCGCGTCTGCCGGAGGAGTGATCC
CGATCGCGGTAGTCGCCGTTGCGGGAGCTGCTCTTGTGGTGATGATGGTG
ATGGCGCTTCTTCTCGCCCTTCAGGCACACATCCGACACCACCGAGGACA
CCACCATCTCGGAGTCATCCCGCATGCCGTAGTTGTCCCTGCCGCATCTG
TCGAGATTTTCGCGGGATCGCTGCATATTGTCGCGCAGATTGTCCCGGGA
ACGGGTCATGCTCGGTGGATCGAGGGTCTCCTTGCGGCGGAGGGCGTTGT
GTGAGCTGTTCTTCGAGGCGGACTCGTGCAGGTTCTCCCAGGCTTGGCGG
TAGTACCTGTTGAGTCCATTGCGGGATCCGGAGGTGGAGCTATCGAAGCT
GGCCACAGTGTTGCAGTCGGGCGAGGCGCGATGGCGATAGTGTTGTGTGG
TTCGGTTTCTTCGCACAAGGATCACGATCGTTGTGATGACGGCGGCCAGG
AAGACGAAACCACCAAAAGCGCCCAGAGCAACGATGGCGCCCCGATTAAG
TTTGGCCTCCTTGGGCTCCTTGCGGTCGGGATTATCGACGGCGAAGGGCA
CGTTGACATTGGGCGACTGGTTCTGCTGGATGTTGA

BO13065.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PA 2868 CG9095-RA 2198..2865 686..19 3290 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 2769..3436 686..19 3310 99.7 Minus
CG9095-RA 4791 CG9095-RA 2769..3436 686..19 3310 99.7 Minus
CG9095-RD 4809 CG9095-RD 2769..3454 686..19 3120 97.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15141292..15141524 19..251 1165 100 Plus
X 23542271 X 15144251..15144428 509..686 860 98.9 Plus
X 23542271 X 15141612..15141772 248..408 805 100 Plus
X 23542271 X 15141895..15142000 405..510 530 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:36:44 has no hits.

BO13065.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:54 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 2199..2868 16..685 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:01 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 2199..2868 16..685 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:41:17 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 2770..3436 19..685 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:40 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 2770..3436 19..685 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:40 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15141292..15141520 19..247 100 <- Plus
X 15141612..15141770 248..406 100 <- Plus
X 15141897..15141998 407..508 100 <- Plus
X 15144251..15144427 509..685 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:41:17 Download gff for BO13065.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15035325..15035553 19..247 100 <- Plus
arm_X 15035645..15035803 248..406 100 <- Plus
arm_X 15035930..15036031 407..508 100 <- Plus
arm_X 15038284..15038460 509..685 98   Plus

BO13065.5prime Sequence

678 bp (660 high quality bases) assembled on 2006-05-08

> BO13065.5prime
GAAGTTATCAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTC
TGCCGCTGCTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCG
CAGGCGCAGAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCA
CAGCAGCGTCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCT
CCTACAGCTGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTC
TGCGACAAGGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAA
CGTTGCCGCTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTG
CTCCACAAAAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAG
ACCTGCTCGCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCT
CCTGGAACCCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCT
GTTGCGGCAATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGA
CCGGACTTGGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGA
GGGCGGACAGCCGCTCTTCCTGCCCTGCAATCCCCCCGATGCCGGGAGCC
TTCGTGAGTGTCCACCTGGAAGAATAGC

BO13065.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PA 2868 CG9095-RA 1..620 17..636 3075 99.8 Plus
CG9095-PA 2868 CG9095-RA 616..653 633..670 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 572..1231 17..678 3245 99.5 Plus
CG9095-RD 4809 CG9095-RD 572..1231 17..678 3245 99.5 Plus
CG9095-RB 5349 CG9095-RB 572..1231 17..678 3245 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15148068..15148282 507..293 1075 100 Minus
X 23542271 X 15150692..15150870 293..115 895 100 Minus
X 23542271 X 15146292..15146455 670..506 760 98.8 Minus
X 23542271 X 15162555..15162654 116..17 500 100 Minus
Blast to na_te.dros performed 2015-02-12 11:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\GEM 1730 Dsub\GEM GEM 1730bp 144..171 60..33 113 89.3 Minus

BO13065.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:55 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 1..660 17..678 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:03 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-PA 1..660 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:46 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1231 9..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:21 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1231 9..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:21 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15148069..15148281 294..506 100 <- Minus
X 15150692..15150868 117..293 100 <- Minus
X 15162555..15162662 9..116 97   Minus
X 15146285..15146454 507..678 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:46 Download gff for BO13065.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15040318..15040487 507..678 98 <- Minus
arm_X 15042102..15042314 294..506 100 <- Minus
arm_X 15044725..15044901 117..293 100 <- Minus
arm_X 15056588..15056695 9..116 97   Minus

BO13065.complete Sequence

2899 bp assembled on 2008-01-17

GenBank Submission: FJ632664

> BO13065.complete
GAAGTTATCAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTC
TGCCGCTGCTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCG
CAGGCGCAGAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCA
CAGCAGCGTCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCT
CCTACAGCTGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTC
TGCGACAAGGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAA
CGTTGCCGCTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTG
CTCCACAAAAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAG
ACCTGCTCGCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCT
CCTGGAACCCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCT
GTTGCGGCAATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGA
CCGGACTTGGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGA
GGCCGGACAGCCGCTCTTCCTGCCCTGCAATCCCCCGATGCCGGGAGCCT
TCGTGAGTGTCCACCTGGAGAATAGCACACCCAATCCGCTGTCCATTTGC
GAGGCGTTCGTCTACACGGACCAAGCGCTGCCCATCGAGCGGTGTCCCAC
CTTCCGCGATCAGCCGCCTGGAGCTCTGGCCTCGTACAATGGCAAGTGCT
ACATCTTCTACAACCGCCAGCCGCTGAACTTTTTGGACGCACTGTCCTTC
TGTCGATCCCGTGGCGGTACGCTGATCAGTGAGAGCAATCCGGCGCTGCA
GGGATTCATCAGTTGGGAGCTGTGGCGGCGTCATCGCAGTGACGTCAGTT
CGCAGTACTGGATGGGAGCGGTACGTGATGGCAGCGATCGCAGCAGCTGG
AAATGGGTGAACGGTGACGAGCTGACCGTCTCCTTCTGGAGTCATCCCGG
CGGCGATGAGGATTGTGCCCGATTTGATGGCTCCAAGGGCTGGCTCTGGA
GCGATACCAACTGCAACACGCTGCTGAACTTCATCTGTCAGCACCAACCG
AAGACCTGTGGCCGACCGGAGCAACCGCCCAATTCCACGATGGTAGCCCT
GAACGGATTCGAGGTTGGCGCCCAGATCAAGTACAGCTGCGATGCCAATC
ACCTGCTGGTGGGTCCCGCCACGAGGACCTGCCTGGAGACTGGATTCTAC
AATGAGTTCCCGCCAGTGTGCAAGTACATCGAGTGTGGTCTGCCGGCCAG
CATTGCCCATGGTTCCTACGCCCTGCTCAACAACACGGTTGGCTACTTGA
GCCTGGTGAAGTATTCGTGCGAGGAGGGTTACGAGATGATAGGACGAGCT
TTGCTCACCTGCGACTTTGATGAGCGCTGGAATGGACCTCCACCACGTTG
TGAGATTGTGGAGTGCGACACTCTGCCCGGCAACTACTACAGCACCATTA
TCAACGCTCCCAATGGCACATACTACGGCTCCAAGGCGGAGATCAGTTGT
CCACCCGGATACCGCATGGAAGGACCTCGAGTGCTTACCTGCCTGGCCAG
TGGTCAATGGAGCAGTGCCCTGCCGCGTTGCATCAAACTGGAACCGTCCA
CTCAGCCCACTGCCGCGTCCACCATTCCCGTGCCCTCGTCGGTGGCCACG
CCACCACCGTTCCGCCCCAAGGTGGTCAGCTCGACCACCAGCCGCACCCC
CTACCGCCCAGCAGTATCCACGGCGAGCAGCGGCATTGGCGGCAGCTCCA
CCAGCACAGTGGGCACGTATCCCAGTCTCAGCCCCACGCAGGTGGAGATC
AATGGCGAATCTGAATCCGAAGAGGAAATCAATGTGCCTCCAGTGCCTGG
CACCGTTCGCGAGGAGTTCCCACCACGACGCACAGTTCGTCCAGTGCTCA
TACCGAAGAAGCCGAACAGCACACCGGCTGCCCTGCCGCCCACCACCCAT
CAGGTGCCACCGCAACCACCGTCCACCTACGCACCCACACCACCGCGCAG
CTCGCGACCAAGTGGTGCTCCGAATAGCGCCGGCGAAGTGGAGACAACCA
CGCGGAATACACAGCAGATCATCGCCAATTCGCATCCGCAAGACAACGAG
ATCCCCGACAGTGTCAACATCCAGCAGAACCAGTCGCCCAATGTCAACGT
GCCCTTCGCCGTCGATAATCCCGACCGCAAGGAGACCAAGGAGGCCAAAC
TTAATCTGGGCGCCATCGTTGCTCTGGGCGCTTTTGGTGGTTTCGTCTTC
CTGGCCGCCGTCATCACAACGATCGTGATCCTTGTGCGAAGAAACCGAAC
CACACAACACTATCGCCATCGCGCCTCGCCCGACTGCAACACTGTGGCCA
GCTTCGATAGCTCCACCTCCGGATCCCGCAATGGACTCAACAGGTACTAC
CGCCAAGCCTGGGAGAACCTGCACGAGTCCGCCTCGAAGAACAGCTCACA
CAACGCCCTCCGCCGCAAGGAGACCCTCGATCCACCGAGCATGACCCGTT
CCCGGGACAATCTGCGCGACAATATGCAGCGATCCCGCGAAAATCTCGAC
AGATGCGGCAGGGACAACTACGGCATGCGGGATGACTCCGAGATGGTGGT
GTCCTCGGTGGTGTCGGATGTGTGCCTGAAGGGCGAGAAGAAGCGCCATC
ACCATCATCACCACAAGAGCAGCTCCCGCAACGGCGACTACCGCGATCGG
GATCACTCCTCCGGCAGACGCGAGCACCACCGACATAGTGGTGGTGGTGG
TGGCGGCGGAGGCGGTGGTGGCGGCCACTATGCAAGCTTTCTAGACCAT

BO13065.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 2907 CG9095-PC 1..2865 17..2881 14325 100 Plus
CG9095-RA 2868 CG9095-PA 1..2865 17..2881 14325 100 Plus
CG9095-RD 2886 CG9095-PD 1..2883 17..2881 14110 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 572..3436 17..2881 14325 100 Plus
CG9095-RA 4791 CG9095-RA 572..3436 17..2881 14325 100 Plus
CG9095-RD 4809 CG9095-RD 572..3454 17..2881 14110 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15145636..15146455 1325..506 4100 100 Minus
X 23542271 X 15144251..15144731 2391..1911 2405 100 Minus
X 23542271 X 15144875..15145283 1914..1506 2030 99.8 Minus
X 23542271 X 15141292..15141524 2881..2649 1165 100 Minus
X 23542271 X 15148068..15148282 507..293 1075 100 Minus
X 23542271 X 15145357..15145536 1505..1326 900 100 Minus
X 23542271 X 15150692..15150870 293..115 895 100 Minus
X 23542271 X 15141612..15141772 2652..2492 805 100 Minus
X 23542271 X 15141895..15142000 2495..2390 530 100 Minus
X 23542271 X 15162555..15162654 116..17 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:20:07 has no hits.

BO13065.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:34 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 1..2868 17..2884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:34:26 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 569..3433 17..2883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:10:45 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 572..3436 17..2883 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:34 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 561..3433 9..2881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:08:46 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
CG9095-RA 572..3436 17..2883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:08:46 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
X 15141288..15141520 2653..2883 99 <- Minus
X 15141612..15141770 2494..2652 100 <- Minus
X 15141897..15141998 2392..2493 100 <- Minus
X 15144251..15144731 1911..2391 100 <- Minus
X 15144879..15145283 1506..1910 100 <- Minus
X 15145357..15145536 1326..1505 100 <- Minus
X 15145636..15146454 507..1325 100 <- Minus
X 15148069..15148281 294..506 100 <- Minus
X 15150692..15150868 117..293 100 <- Minus
X 15162555..15162654 17..116 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:10:45 Download gff for BO13065.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15035930..15036031 2392..2493 100 <- Minus
arm_X 15035321..15035553 2653..2883 99 <- Minus
arm_X 15035645..15035803 2494..2652 100 <- Minus
arm_X 15038284..15038764 1911..2391 100 <- Minus
arm_X 15038912..15039316 1506..1910 100 <- Minus
arm_X 15039390..15039569 1326..1505 100 <- Minus
arm_X 15039669..15040487 507..1325 100 <- Minus
arm_X 15042102..15042314 294..506 100 <- Minus
arm_X 15044725..15044901 117..293 100 <- Minus
arm_X 15056588..15056687 17..116 100   Minus

BO13065.pep Sequence

Translation from 16 to 2899

> BO13065.pep
MHRTQPSLPLPLPLLALALALASALAFAQAQNIDAGCSFPGSPAHSSVVF
SNANLTQGTVASYSCERGFELLGPARRVCDKGQWVPEGIPFCVLNVAAGK
APMQISTDGAGAPQKAIDGSTSAFFTPETCSLTKAERSPWWYVNLLEPYM
VQLVRLDFGKSCCGNKPATIVVRVGNNRPDLGTNPICNRFTGLLEAGQPL
FLPCNPPMPGAFVSVHLENSTPNPLSICEAFVYTDQALPIERCPTFRDQP
PGALASYNGKCYIFYNRQPLNFLDALSFCRSRGGTLISESNPALQGFISW
ELWRRHRSDVSSQYWMGAVRDGSDRSSWKWVNGDELTVSFWSHPGGDEDC
ARFDGSKGWLWSDTNCNTLLNFICQHQPKTCGRPEQPPNSTMVALNGFEV
GAQIKYSCDANHLLVGPATRTCLETGFYNEFPPVCKYIECGLPASIAHGS
YALLNNTVGYLSLVKYSCEEGYEMIGRALLTCDFDERWNGPPPRCEIVEC
DTLPGNYYSTIINAPNGTYYGSKAEISCPPGYRMEGPRVLTCLASGQWSS
ALPRCIKLEPSTQPTAASTIPVPSSVATPPPFRPKVVSSTTSRTPYRPAV
STASSGIGGSSTSTVGTYPSLSPTQVEINGESESEEEINVPPVPGTVREE
FPPRRTVRPVLIPKKPNSTPAALPPTTHQVPPQPPSTYAPTPPRSSRPSG
APNSAGEVETTTRNTQQIIANSHPQDNEIPDSVNIQQNQSPNVNVPFAVD
NPDRKETKEAKLNLGAIVALGAFGGFVFLAAVITTIVILVRRNRTTQHYR
HRASPDCNTVASFDSSTSGSRNGLNRYYRQAWENLHESASKNSSHNALRR
KETLDPPSMTRSRDNLRDNMQRSRENLDRCGRDNYGMRDDSEMVVSSVVS
DVCLKGEKKRHHHHHHKSSSRNGDYRDRDHSSGRREHHRHSGGGGGGGGG
GGGHYASFLDH

BO13065.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-PC 968 CG9095-PC 1..955 1..955 5174 100 Plus
CG9095-PA 955 CG9095-PA 1..955 1..955 5174 100 Plus
CG9095-PD 961 CG9095-PD 1..961 1..955 5157 99.4 Plus
CG9095-PB 1141 CG9095-PB 1..802 1..803 4275 99 Plus
CG9095-PB 1141 CG9095-PB 979..1141 793..955 900 100 Plus
fw-PC 1174 CG1500-PC 35..578 13..555 760 32.5 Plus