Clone BO13066 Report

Search the DGRC for BO13066

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG14234-RA
Protein status:BO13066.pep: validated full length
Sequenced Size:1177

Clone Sequence Records

BO13066.3prime Sequence

634 bp (557 high quality bases) assembled on 2006-05-08

> BO13066.3prime
ATGGTCTAGAAAGCTTGCTCCAATGTCACGGACGATCTCGATCTTGTCGC
ACAGCTCCGAGTCCGGATCGTGGATGGTGGTGAAGTGCGTGCGGTCGCTC
CGGAACGTGTTTCGTTCGTTTGAGCTGCTCTTTATCGATCTCTCCGACGG
CGTCTCCGTGCCGCTCAGCTGGATGCGCTTCTGCAGAGCCGACACGAAGT
TCTGCGATATGATGTCACCACGGGCCGTGCGCACCTGGTACAGATAGCGG
AACTTGCGCTGCCTGGCCTCCTCGCGCGTCTCCCGGGTGCGGGATTGGGA
TCGCCGGACGGGAGCGATGCCGTGGTTGGGTCCCGCCTGCTGCTGGCTGT
GCGGCAGATGGGCGCCGTGCGCGTGGCCAGGATGGTTGTGATGCCGCATG
TACACCCGCTTGCGGTGATCCACGCGCCAGGCGGTAATGAAGCACTGCAC
CATGATGCTGAGCACAATGGTGACGGGCCAGGCGGCGATCAGGAGGCCAC
CGTAGCAAGGTGGCGGCGAGGGATGCGGCCGCATGCCGATTATCCAATTG
ATGGTCTCCAGACCGTGCGTGAAGAAGTCGATGGCGCTGAGGATCATGGC
CGTGCCCACAATGCTGGAAGGGAGAATGGTCACG

BO13066.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 1146 CG14234-RA 528..1143 634..19 3030 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 947..1562 634..19 3050 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19737701..19738043 544..202 1715 100 Minus
X 23542271 X 19738194..19738380 205..19 935 100 Minus
X 23542271 X 19737498..19737588 634..544 425 97.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:16:49 has no hits.

BO13066.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:56 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 528..1146 15..634 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:04 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 528..1146 15..634 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:16 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 947..1565 15..634 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:55 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 947..1565 15..634 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:55 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19737498..19737588 544..634 97 -> Minus
X 19737702..19738043 202..543 100 -> Minus
X 19738198..19738383 15..201 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:16 Download gff for BO13066.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19631531..19631621 544..634 97 -> Minus
arm_X 19631735..19632076 202..543 100 -> Minus
arm_X 19632231..19632416 15..201 98   Minus

BO13066.5prime Sequence

730 bp (624 high quality bases) assembled on 2006-05-08

> BO13066.5prime
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGG
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCCTGGTG

BO13066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 1146 CG14234-RA 1..714 17..730 3520 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 420..1133 17..730 3540 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19736994..19737361 102..469 1840 100 Plus
X 23542271 X 19737423..19737588 469..634 830 100 Plus
X 23542271 X 19737701..19737797 634..730 455 97.9 Plus
X 23542271 X 19735989..19736076 17..104 440 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:03:19 has no hits.

BO13066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:57 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 1..714 17..730 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:05 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-PA 1..714 17..730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:23 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 411..1133 8..730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:35 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 411..1133 8..730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:35 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19737702..19737797 635..730 97   Plus
X 19735994..19736075 22..103 100 -> Plus
X 19736996..19737361 104..469 100 -> Plus
X 19737424..19737588 470..634 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:23 Download gff for BO13066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19630027..19630108 22..103 100 -> Plus
arm_X 19631029..19631394 104..469 100 -> Plus
arm_X 19631457..19631621 470..634 100 -> Plus
arm_X 19631735..19631830 635..730 97   Plus

BO13066.complete Sequence

1177 bp assembled on 2006-10-11

GenBank Submission: FJ632665

> BO13066.complete
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGC
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTG
GCGCGTGGATCACCGCAAGCGGGTGTACATGCGGCATCACAACCATCCTG
GCCACGCGCACGGCGCCCATCTGCCGCACAGCCAGCAGCAGGCGGGACCC
AACCACGGCATCGCTCCCGTCCGGCGATCCCAATCCCGCACCCGGGAGAC
GCGCGAGGAGGCCAGGCAGCGCAAGTTCCGCTATCTGTACCAGGTGCGCA
CGGCCCGTGGTGACATCATATCGCAGAACTTCGTGTCGGCTCTGCAGAAG
CGCATCCAGCTGAGCGGCACGGAGACGCCGTCGGAGAGATCGATAAAGAG
CAGCTCAAACGAACGAAACACGTTCCGGAGCGACCGCACGCACTTCACCA
CCATCCACGATCCGGACTCGGAGCTGTGCGACAAGATCGAGATCGTCCGT
GACATTGGAGCAAGCTTTCTAGACCAT

BO13066.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 1146 CG14234-PA 1..1143 17..1159 5715 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-RA 3638 CG14234-RA 420..1562 17..1159 5715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19736994..19737361 102..469 1840 100 Plus
X 23542271 X 19737701..19738043 634..976 1715 100 Plus
X 23542271 X 19738194..19738380 973..1159 935 100 Plus
X 23542271 X 19737423..19737588 469..634 830 100 Plus
X 23542271 X 19735989..19736076 17..104 440 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:27:49 has no hits.

BO13066.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:53 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 1..1146 17..1163 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:45 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 407..1561 8..1163 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:03 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 420..1562 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:53 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 407..1561 8..1163 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:15 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
CG14234-RA 420..1562 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:15 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
X 19737424..19737588 470..634 100 -> Plus
X 19735989..19736075 17..103 100 -> Plus
X 19736996..19737361 104..469 100 -> Plus
X 19737702..19738043 635..976 100 -> Plus
X 19738198..19738380 977..1161 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:03 Download gff for BO13066.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19631735..19632076 635..976 100 -> Plus
arm_X 19630022..19630108 17..103 100 -> Plus
arm_X 19631029..19631394 104..469 100 -> Plus
arm_X 19631457..19631621 470..634 100 -> Plus
arm_X 19632231..19632413 977..1161 98   Plus

BO13066.pep Sequence

Translation from 16 to 1177

> BO13066.pep
MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEPLAAILW
AIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPAD
SALAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEF
GYREIYVAVVGGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHG
LETINWIIGMRPHPSPPPCYGGLLIAAWPVTIVLSIMVQCFITAWRVDHR
KRVYMRHHNHPGHAHGAHLPHSQQQAGPNHGIAPVRRSQSRTRETREEAR
QRKFRYLYQVRTARGDIISQNFVSALQKRIQLSGTETPSERSIKSSSNER
NTFRSDRTHFTTIHDPDSELCDKIEIVRDIGASFLDH

BO13066.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14234-PA 381 CG14234-PA 1..381 1..381 1986 100 Plus