Clone Sequence Records
BO13066.3prime Sequence
634 bp (557 high quality bases) assembled on 2006-05-08
> BO13066.3prime
ATGGTCTAGAAAGCTTGCTCCAATGTCACGGACGATCTCGATCTTGTCGC
ACAGCTCCGAGTCCGGATCGTGGATGGTGGTGAAGTGCGTGCGGTCGCTC
CGGAACGTGTTTCGTTCGTTTGAGCTGCTCTTTATCGATCTCTCCGACGG
CGTCTCCGTGCCGCTCAGCTGGATGCGCTTCTGCAGAGCCGACACGAAGT
TCTGCGATATGATGTCACCACGGGCCGTGCGCACCTGGTACAGATAGCGG
AACTTGCGCTGCCTGGCCTCCTCGCGCGTCTCCCGGGTGCGGGATTGGGA
TCGCCGGACGGGAGCGATGCCGTGGTTGGGTCCCGCCTGCTGCTGGCTGT
GCGGCAGATGGGCGCCGTGCGCGTGGCCAGGATGGTTGTGATGCCGCATG
TACACCCGCTTGCGGTGATCCACGCGCCAGGCGGTAATGAAGCACTGCAC
CATGATGCTGAGCACAATGGTGACGGGCCAGGCGGCGATCAGGAGGCCAC
CGTAGCAAGGTGGCGGCGAGGGATGCGGCCGCATGCCGATTATCCAATTG
ATGGTCTCCAGACCGTGCGTGAAGAAGTCGATGGCGCTGAGGATCATGGC
CGTGCCCACAATGCTGGAAGGGAGAATGGTCACG
BO13066.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-PA | 1146 | CG14234-RA | 528..1143 | 634..19 | 3030 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-RA | 3638 | CG14234-RA | 947..1562 | 634..19 | 3050 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:16:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19737701..19738043 | 544..202 | 1715 | 100 | Minus |
X | 23542271 | X | 19738194..19738380 | 205..19 | 935 | 100 | Minus |
X | 23542271 | X | 19737498..19737588 | 634..544 | 425 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:16:49 has no hits.
BO13066.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:56 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-PA | 528..1146 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:04 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-PA | 528..1146 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:02:16 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 947..1565 | 15..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:55 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 947..1565 | 15..634 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:55 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19737498..19737588 | 544..634 | 97 | -> | Minus |
X | 19737702..19738043 | 202..543 | 100 | -> | Minus |
X | 19738198..19738383 | 15..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:02:16 Download gff for
BO13066.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19631531..19631621 | 544..634 | 97 | -> | Minus |
arm_X | 19631735..19632076 | 202..543 | 100 | -> | Minus |
arm_X | 19632231..19632416 | 15..201 | 98 | | Minus |
BO13066.5prime Sequence
730 bp (624 high quality bases) assembled on 2006-05-08
> BO13066.5prime
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGG
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCCTGGTG
BO13066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-PA | 1146 | CG14234-RA | 1..714 | 17..730 | 3520 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-RA | 3638 | CG14234-RA | 420..1133 | 17..730 | 3540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:03:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19736994..19737361 | 102..469 | 1840 | 100 | Plus |
X | 23542271 | X | 19737423..19737588 | 469..634 | 830 | 100 | Plus |
X | 23542271 | X | 19737701..19737797 | 634..730 | 455 | 97.9 | Plus |
X | 23542271 | X | 19735989..19736076 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:03:19 has no hits.
BO13066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:53:57 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-PA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:05 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-PA | 1..714 | 17..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:23 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 411..1133 | 8..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:35 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 411..1133 | 8..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:35 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19737702..19737797 | 635..730 | 97 | | Plus |
X | 19735994..19736075 | 22..103 | 100 | -> | Plus |
X | 19736996..19737361 | 104..469 | 100 | -> | Plus |
X | 19737424..19737588 | 470..634 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:23 Download gff for
BO13066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19630027..19630108 | 22..103 | 100 | -> | Plus |
arm_X | 19631029..19631394 | 104..469 | 100 | -> | Plus |
arm_X | 19631457..19631621 | 470..634 | 100 | -> | Plus |
arm_X | 19631735..19631830 | 635..730 | 97 | | Plus |
BO13066.complete Sequence
1177 bp assembled on 2006-10-11
GenBank Submission: FJ632665
> BO13066.complete
GAAGTTATCAGTCGACATGAGGGTGGCGGCGGACATGGTGTATGACTACG
GCAGCGAGGACTCCATGAGCACCACCCACCTGGACTGGCCCTTTCTCATC
AAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTGCGCCGGAGCCGCT
GGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGCATCGTGTACGCGC
TACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCTCAGTGGACTGCTG
GTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCCAGATCACCTTCCT
GGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCGGGTTTGCTGGGCG
CGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCTCATTAGCGCCTTT
GCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCTGCGTGGCCACCTT
TCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTGGCCGTGGTGGGTG
GAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGTGAAGTACGTGACC
ATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCCTCAGCGCCATCGA
CTTCTTCACGCACGGTCTGGAGACCATCAATTGGATAATCGGCATGCGGC
CGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCTGATCGCCGCCTGG
CCCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCTTCATTACCGCCTG
GCGCGTGGATCACCGCAAGCGGGTGTACATGCGGCATCACAACCATCCTG
GCCACGCGCACGGCGCCCATCTGCCGCACAGCCAGCAGCAGGCGGGACCC
AACCACGGCATCGCTCCCGTCCGGCGATCCCAATCCCGCACCCGGGAGAC
GCGCGAGGAGGCCAGGCAGCGCAAGTTCCGCTATCTGTACCAGGTGCGCA
CGGCCCGTGGTGACATCATATCGCAGAACTTCGTGTCGGCTCTGCAGAAG
CGCATCCAGCTGAGCGGCACGGAGACGCCGTCGGAGAGATCGATAAAGAG
CAGCTCAAACGAACGAAACACGTTCCGGAGCGACCGCACGCACTTCACCA
CCATCCACGATCCGGACTCGGAGCTGTGCGACAAGATCGAGATCGTCCGT
GACATTGGAGCAAGCTTTCTAGACCAT
BO13066.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-RA | 1146 | CG14234-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-RA | 3638 | CG14234-RA | 420..1562 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19736994..19737361 | 102..469 | 1840 | 100 | Plus |
X | 23542271 | X | 19737701..19738043 | 634..976 | 1715 | 100 | Plus |
X | 23542271 | X | 19738194..19738380 | 973..1159 | 935 | 100 | Plus |
X | 23542271 | X | 19737423..19737588 | 469..634 | 830 | 100 | Plus |
X | 23542271 | X | 19735989..19736076 | 17..104 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:27:49 has no hits.
BO13066.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:53 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 1..1146 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:45 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 407..1561 | 8..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:25:03 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 420..1562 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:53 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 407..1561 | 8..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:32:15 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14234-RA | 420..1562 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:32:15 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19737424..19737588 | 470..634 | 100 | -> | Plus |
X | 19735989..19736075 | 17..103 | 100 | -> | Plus |
X | 19736996..19737361 | 104..469 | 100 | -> | Plus |
X | 19737702..19738043 | 635..976 | 100 | -> | Plus |
X | 19738198..19738380 | 977..1161 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:25:03 Download gff for
BO13066.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19631735..19632076 | 635..976 | 100 | -> | Plus |
arm_X | 19630022..19630108 | 17..103 | 100 | -> | Plus |
arm_X | 19631029..19631394 | 104..469 | 100 | -> | Plus |
arm_X | 19631457..19631621 | 470..634 | 100 | -> | Plus |
arm_X | 19632231..19632413 | 977..1161 | 98 | | Plus |
BO13066.pep Sequence
Translation from 16 to 1177
> BO13066.pep
MRVAADMVYDYGSEDSMSTTHLDWPFLIKGILEGQTCTPTAPEPLAAILW
AIFAVFGIVYALLGYRCLRAVGFLSGLLVGANGIFILQDFQITFLGKPAD
SALAIVAGLLGAVLGSTYPVASVLISAFAGALLSGAAMAVCVATFPDNEF
GYREIYVAVVGGAVICSVLTLCCVKYVTILTSSIVGTAMILSAIDFFTHG
LETINWIIGMRPHPSPPPCYGGLLIAAWPVTIVLSIMVQCFITAWRVDHR
KRVYMRHHNHPGHAHGAHLPHSQQQAGPNHGIAPVRRSQSRTRETREEAR
QRKFRYLYQVRTARGDIISQNFVSALQKRIQLSGTETPSERSIKSSSNER
NTFRSDRTHFTTIHDPDSELCDKIEIVRDIGASFLDH
BO13066.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14234-PA | 381 | CG14234-PA | 1..381 | 1..381 | 1986 | 100 | Plus |