Clone Sequence Records
BO13068.5prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-08
> BO13068.5prime
GAAGTTATCAGTCGACATGAGATCCCGCGATTCCCGATTGACTATCCTAA
CATTGCTGATTGCGTGCTGCCTGGATTCGAGTGGCGCTCTGTTCTTCAAG
TCCTGGAAGACGGGAAAAGGATATACTGGATATAGTGGAGTACAAGACTA
TGGAGGCTACGGTCAGGGAAACTACGGCTATGGAAGCTATGCTGGAGGAT
ATGGTTACAACTATCCCGCATATAATTCCTACTCTTACCCAGCTTACTCA
GGCCACTCCTCTTACTCATACTCCAAAGGAGGACGCAAGCCTTCTGGAAA
CCGCAAAGGACGCACTTACTCGGACATTCGAAGAGTTATAAATCCCGATC
CATACATCGGTCCTGGAGGCAGTCGCTTCCTGCCCCGTACTCCATATTCC
GCCCTTTGGGGTGCAAGCTTTCTAGACC
BO13068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 399 | CG13640-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..430 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861736..24862131 | 412..17 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:01:20 has no hits.
BO13068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:01 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:11 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:50:29 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..433 | 10..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:19:37 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..433 | 10..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:37 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861733..24862137 | 10..416 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:50:29 Download gff for
BO13068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687455..20687859 | 10..416 | 98 | | Minus |
BO13068.3prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-08
> BO13068.3prime
ATGGTCTAGAAAGCTTGCACCCCAAAGGGCGGAATATGGAGTACGGGGCA
GGAAGCGACTGCCTCCAGGACCGATGTATGGATCGGGATTTATAACTCTT
CGAATGTCCGAGTAAGTGCGTCCTTTGCGGTTTCCAGAAGGCTTGCGTCC
TCCTTTGGAGTATGAGTAAGAGGAGTGGCCTGAGTAAGCTGGGTAAGAGT
AGGAATTATATGCGGGATAGTTGTAACCATATCCTCCAGCATAGCTTCCA
TAGCCGTAGTTTCCCTGACCGTAGCCTCCATAGTCTTGTACTCCACTATA
TCCAGTATATCCTTTTCCCGTCTTCCAGGACTTGAAGAACAGAGCGCCAC
TCGAATCCAGGCAGCACGCAATCAGCAATGTTAGGATAGTCAATCGGGAA
TCGCGGGATCTCATGTCGACTGATAACT
BO13068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 399 | CG13640-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..430 | 414..19 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861736..24862131 | 19..414 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:14:48 has no hits.
BO13068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:00 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:09 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:30 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..433 | 15..421 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:10 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 29..433 | 15..421 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:10 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861733..24862137 | 15..421 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:30 Download gff for
BO13068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687455..20687859 | 15..421 | 98 | | Plus |
BO13068.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ632666
> BO13068.complete
GAAGTTATCAGTCGACATGAGATCCCGCGATTCCCGATTGACTATCCTAA
CATTGCTGATTGCGTGCTGCCTGGATTCGAGTGGCGCTCTGTTCTTCAAG
TCCTGGAAGACGGGAAAAGGATATACTGGATATAGTGGAGTACAAGACTA
TGGAGGCTACGGTCAGGGAAACTACGGCTATGGAAGCTATGCTGGAGGAT
ATGGTTACAACTATCCCGCATATAATTCCTACTCTTACCCAGCTTACTCA
GGCCACTCCTCTTACTCATACTCCAAAGGAGGACGCAAGCCTTCTGGAAA
CCGCAAAGGACGCACTTACTCGGACATTCGAAGAGTTATAAATCCCGATC
CATACATCGGTCCTGGAGGCAGTCGCTTCCTGCCCCGTACTCCATATTCC
GCCCTTTGGGGTGCAAGCTTTCTAGACCAT
BO13068.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 399 | CG13640-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-RA | 507 | CG13640-RA | 35..430 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24861736..24862131 | 412..17 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:22:07 has no hits.
BO13068.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:58:44 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:10:22 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 26..430 | 10..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:55 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 35..430 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:58:44 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 26..430 | 10..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:57 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13640-RA | 35..430 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:57 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24861734..24862131 | 17..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:55 Download gff for
BO13068.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20687456..20687853 | 17..414 | 99 | | Minus |
BO13068.pep Sequence
Translation from 16 to 430
> BO13068.pep
MRSRDSRLTILTLLIACCLDSSGALFFKSWKTGKGYTGYSGVQDYGGYGQ
GNYGYGSYAGGYGYNYPAYNSYSYPAYSGHSSYSYSKGGRKPSGNRKGRT
YSDIRRVINPDPYIGPGGSRFLPRTPYSALWGASFLDH
BO13068.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13640-PA | 132 | CG13640-PA | 1..132 | 1..132 | 734 | 100 | Plus |
