Clone Sequence Records
BO13071.3prime Sequence
720 bp (602 high quality bases) assembled on 2006-05-08
> BO13071.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CCACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCC
GGCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGAACTTGTCACC
CGCGCACCGCGGGTGCCTCG
BO13071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PB | 837 | Hph-RB | 252..834 | 601..19 | 2915 | 100 | Minus |
CG31543-PC | 1437 | Hph-RC | 852..1434 | 601..19 | 2915 | 100 | Minus |
CG31543-PA | 978 | Hph-RA | 393..975 | 601..19 | 2915 | 100 | Minus |
CG31543-PB | 837 | Hph-RB | 154..252 | 700..602 | 470 | 98.9 | Minus |
CG31543-PC | 1437 | Hph-RC | 754..852 | 700..602 | 470 | 98.9 | Minus |
CG31543-PA | 978 | Hph-RA | 295..393 | 700..602 | 470 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 1263..1962 | 720..19 | 3430 | 99.4 | Minus |
Hph-RC | 2496 | CG44015-RC | 1263..1962 | 720..19 | 3430 | 99.4 | Minus |
Hph-RA | 2337 | CG44015-RA | 877..1576 | 720..19 | 3430 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 395..19 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 5267262..5267402 | 535..395 | 705 | 100 | Minus |
3R | 32079331 | 3R | 5266930..5267032 | 720..617 | 440 | 97.1 | Minus |
3R | 32079331 | 3R | 5267117..5267202 | 620..534 | 385 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:35:56 has no hits.
BO13071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:05 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 276..978 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:15 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 276..978 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:16:55 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 437..1139 | 15..720 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:28:53 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 877..1579 | 15..720 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:28:53 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5266930..5267032 | 617..720 | 97 | -> | Minus |
3R | 5267121..5267201 | 535..616 | 98 | -> | Minus |
3R | 5267263..5267402 | 395..534 | 100 | -> | Minus |
3R | 5267462..5267836 | 20..394 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:16:55 Download gff for
BO13071.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092652..1092754 | 617..720 | 97 | -> | Minus |
arm_3R | 1092843..1092923 | 535..616 | 98 | -> | Minus |
arm_3R | 1092985..1093124 | 395..534 | 100 | -> | Minus |
arm_3R | 1093184..1093558 | 20..394 | 100 | -> | Minus |
BO13071.5prime Sequence
884 bp (756 high quality bases) assembled on 2006-05-08
> BO13071.5prime
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAACAATGTCTGGTATCTGAACCAT
CAAATTGACTCTGTGGTGGATCGTGTTAACACGA
BO13071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PC | 1437 | Hph-RC | 1..868 | 17..884 | 4215 | 99.4 | Plus |
CG31543-PA | 978 | Hph-RA | 98..409 | 573..884 | 1435 | 98.3 | Plus |
CG31543-PB | 837 | Hph-RB | 1..268 | 617..884 | 1215 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 529..1396 | 17..884 | 4265 | 99.4 | Plus |
Hph-RC | 2496 | CG44015-RC | 529..1396 | 17..884 | 4265 | 99.4 | Plus |
Hph-RA | 2337 | CG44015-RA | 699..1010 | 573..884 | 1485 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5257565..5258121 | 17..573 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 5266751..5267031 | 572..852 | 1360 | 98.9 | Plus |
Blast to na_te.dros performed 2015-02-09 08:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2662 | 241..510 | 141 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2377 | 453..510 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2380 | 450..507 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2352 | 471..529 | 110 | 67.8 | Plus |
BO13071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:06 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PC | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:17 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PC | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:17 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1395 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:13 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1395 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:13 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5257565..5258121 | 17..573 | 100 | -> | Plus |
3R | 5266753..5267032 | 574..853 | 98 | -> | Plus |
3R | 5267121..5267150 | 854..883 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:17 Download gff for
BO13071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1083287..1083843 | 17..573 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 574..853 | 98 | -> | Plus |
arm_3R | 1092843..1092872 | 854..883 | 96 | | Plus |
BO13071.complete Sequence
1468 bp assembled on 2008-01-17
GenBank Submission: FJ632667
> BO13071.complete
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCAT
BO13071.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 1437 | CG44015-PD | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Hph-RC | 1437 | CG44015-PC | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Hph-RA | 978 | CG44015-PA | 98..975 | 573..1450 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 529..1962 | 17..1450 | 7170 | 100 | Plus |
Hph-RC | 2496 | CG44015-RC | 529..1962 | 17..1450 | 7170 | 100 | Plus |
Hph-RA | 2337 | CG44015-RA | 699..1576 | 573..1450 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5257565..5258121 | 17..573 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 5267461..5267837 | 1074..1450 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 5266751..5267032 | 572..853 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 934..1074 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 850..935 | 430 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 07:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2662 | 241..510 | 141 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2377 | 453..510 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2380 | 450..507 | 132 | 72.4 | Plus |
BO13071.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:35 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 1..1437 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:13 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 525..1958 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:57 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1962 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:35 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 525..1961 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:43 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1962 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:43 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5257565..5258121 | 17..573 | 100 | -> | Plus |
3R | 5266753..5267032 | 574..853 | 100 | -> | Plus |
3R | 5267121..5267201 | 854..934 | 100 | -> | Plus |
3R | 5267263..5267402 | 935..1074 | 100 | -> | Plus |
3R | 5267462..5267837 | 1075..1452 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:57 Download gff for
BO13071.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1083287..1083843 | 17..573 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 574..853 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 854..934 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 935..1074 | 100 | -> | Plus |
arm_3R | 1093184..1093559 | 1075..1452 | 99 | | Plus |
BO13071.pep Sequence
Translation from 16 to 1468
> BO13071.pep
MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY
CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN
LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET
ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICTASFLDH
BO13071.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-PD | 478 | CG44015-PD | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 1..478 | 1..478 | 2537 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 34..325 | 187..478 | 1543 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 201..478 | 1468 | 100 | Plus |