Clone BO13071 Report

Search the DGRC for BO13071

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptHph-RC
Protein status:BO13071.pep:
Sequenced Size:1468

Clone Sequence Records

BO13071.3prime Sequence

720 bp (602 high quality bases) assembled on 2006-05-08

> BO13071.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CCACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCC
GGCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGAACTTGTCACC
CGCGCACCGCGGGTGCCTCG

BO13071.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PB 837 Hph-RB 252..834 601..19 2915 100 Minus
CG31543-PC 1437 Hph-RC 852..1434 601..19 2915 100 Minus
CG31543-PA 978 Hph-RA 393..975 601..19 2915 100 Minus
CG31543-PB 837 Hph-RB 154..252 700..602 470 98.9 Minus
CG31543-PC 1437 Hph-RC 754..852 700..602 470 98.9 Minus
CG31543-PA 978 Hph-RA 295..393 700..602 470 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:35:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 1263..1962 720..19 3430 99.4 Minus
Hph-RC 2496 CG44015-RC 1263..1962 720..19 3430 99.4 Minus
Hph-RA 2337 CG44015-RA 877..1576 720..19 3430 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 395..19 1885 100 Minus
3R 32079331 3R 5267262..5267402 535..395 705 100 Minus
3R 32079331 3R 5266930..5267032 720..617 440 97.1 Minus
3R 32079331 3R 5267117..5267202 620..534 385 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 12:35:56 has no hits.

BO13071.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:05 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 276..978 15..720 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:15 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 276..978 15..720 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:16:55 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 437..1139 15..720 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:28:53 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 877..1579 15..720 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:28:53 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5266930..5267032 617..720 97 -> Minus
3R 5267121..5267201 535..616 98 -> Minus
3R 5267263..5267402 395..534 100 -> Minus
3R 5267462..5267836 20..394 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:16:55 Download gff for BO13071.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092652..1092754 617..720 97 -> Minus
arm_3R 1092843..1092923 535..616 98 -> Minus
arm_3R 1092985..1093124 395..534 100 -> Minus
arm_3R 1093184..1093558 20..394 100 -> Minus

BO13071.5prime Sequence

884 bp (756 high quality bases) assembled on 2006-05-08

> BO13071.5prime
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAACAATGTCTGGTATCTGAACCAT
CAAATTGACTCTGTGGTGGATCGTGTTAACACGA

BO13071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PC 1437 Hph-RC 1..868 17..884 4215 99.4 Plus
CG31543-PA 978 Hph-RA 98..409 573..884 1435 98.3 Plus
CG31543-PB 837 Hph-RB 1..268 617..884 1215 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1396 17..884 4265 99.4 Plus
Hph-RC 2496 CG44015-RC 529..1396 17..884 4265 99.4 Plus
Hph-RA 2337 CG44015-RA 699..1010 573..884 1485 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 17..573 2785 100 Plus
3R 32079331 3R 5266751..5267031 572..852 1360 98.9 Plus
Blast to na_te.dros performed 2015-02-09 08:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 241..510 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 453..510 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 450..507 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2352 471..529 110 67.8 Plus

BO13071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:06 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PC 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:17 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PC 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:17 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1395 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:13 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1395 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:13 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 17..573 100 -> Plus
3R 5266753..5267032 574..853 98 -> Plus
3R 5267121..5267150 854..883 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:17 Download gff for BO13071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1083287..1083843 17..573 100 -> Plus
arm_3R 1092475..1092754 574..853 98 -> Plus
arm_3R 1092843..1092872 854..883 96   Plus

BO13071.complete Sequence

1468 bp assembled on 2008-01-17

GenBank Submission: FJ632667

> BO13071.complete
GAAGTTATCAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAG
CAAGCCATTCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCG
CGCTGCTCCATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTG
CAAGGCCGTCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCG
ACCACCGCACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGC
AACAACAATAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGC
TGTGGCATCTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCA
CCGCCCAGATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAG
GTAGACAACCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGC
TGCAGCTGCGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATC
ATCACCATAATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGAT
GCCAGCTTCATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCG
TAACATCATCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCAT

BO13071.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:44:00
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 1437 CG44015-PD 1..1434 17..1450 7170 100 Plus
Hph-RC 1437 CG44015-PC 1..1434 17..1450 7170 100 Plus
Hph-RA 978 CG44015-PA 98..975 573..1450 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1962 17..1450 7170 100 Plus
Hph-RC 2496 CG44015-RC 529..1962 17..1450 7170 100 Plus
Hph-RA 2337 CG44015-RA 699..1576 573..1450 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 17..573 2785 100 Plus
3R 32079331 3R 5267461..5267837 1074..1450 1885 100 Plus
3R 32079331 3R 5266751..5267032 572..853 1410 100 Plus
3R 32079331 3R 5267262..5267402 934..1074 705 100 Plus
3R 32079331 3R 5267117..5267202 850..935 430 100 Plus
Blast to na_te.dros performed 2014-11-28 07:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 241..510 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 453..510 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 450..507 132 72.4 Plus

BO13071.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:35 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 1..1437 17..1454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:37:13 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1958 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:57 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1962 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:35 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1961 17..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:02:43 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1962 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:02:43 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 17..573 100 -> Plus
3R 5266753..5267032 574..853 100 -> Plus
3R 5267121..5267201 854..934 100 -> Plus
3R 5267263..5267402 935..1074 100 -> Plus
3R 5267462..5267837 1075..1452 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:57 Download gff for BO13071.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1083287..1083843 17..573 100 -> Plus
arm_3R 1092475..1092754 574..853 100 -> Plus
arm_3R 1092843..1092923 854..934 100 -> Plus
arm_3R 1092985..1093124 935..1074 100 -> Plus
arm_3R 1093184..1093559 1075..1452 99   Plus

BO13071.pep Sequence

Translation from 16 to 1468

> BO13071.pep
MSRGRGKVRDSASHSGSHSASKSAMDPPRCSICGTQQQLLRCAKCKAVYY
CSPAHQHLHWPDHRTECRLLTRQKLNSSNNNKQQQRQQIQQLQQAVASAN
LECSGAGANCSTAQMMTPAHQAQSWPAEVDNLLNLLGQPGSQEKAAAAET
ETGQRQQQHQHHHHNGEKSSSYQIGLADASFMGSGSERRYEDLCRNIISD
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICTASFLDH

BO13071.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PD 478 CG44015-PD 1..478 1..478 2537 100 Plus
Hph-PC 478 CG44015-PC 1..478 1..478 2537 100 Plus
Hph-PA 325 CG44015-PA 34..325 187..478 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 201..478 1468 100 Plus