Clone Sequence Records
BO13078.3prime Sequence
650 bp (598 high quality bases) assembled on 2006-05-08
> BO13078.3prime
ATGGTCTAGAAAGCTTGCAACTCGTGTCATCTTAAAGCGCAGCGGTCCAT
CCGGCGCGTACATGAAAGTGACTGCGTAATCCAGTGGCTTGTGGTTGTAC
TCCAGTTTGTAGTTTCGTAGTAGCTTGGCCAGCAGTATTTGCATCTCCAG
ATCAGCGAATCGACGACCCAGACACATCCGAGCTCCATAGCCGTAAGGCA
GCGAGGCGAACGGGTGAAGTTTGCCCGGAGTACCACCATGCTGTGGTTTC
AACCATCTTTCGGGCCTGAAAGTGGCTGCATCCGTGACATACTCCTCCAT
ATTACCCGTGACAATAGTCGGAAAGACCGCCTGCACTCCCTTGGGCACCT
GGTAGCCACAGATGACACTGTCCTCCATGAGAGTTCGTCCGTTTCCAATC
ACCGTGCTGTACATGCGGAACACCTCCTTGATGAAGCCCTTCAGGTGGTG
CATCTGATCAAGCAGCGGAATTGTGAGTGGTGTGTTTGGATCCGGAAGTA
GTCGCTTTAATTCCTCGTGAACCTTTTTGCTGATCCACTGGACGTGTGGC
CAGTTGGTACAACATCGAACAAAACAGCCATGGATATCGTATCTATTCCG
ACGAGAATCAAATCAAGTGCCATAATGGTGGCTATTTTTTTCGTCCTTCT
BO13078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8587-PA | 1662 | Cyp301a1-RA | 1151..1659 | 527..19 | 2545 | 100 | Minus |
| CG8587-PA | 1662 | Cyp301a1-RA | 1040..1108 | 640..572 | 345 | 100 | Minus |
| CG8587-PA | 1662 | Cyp301a1-RA | 1106..1154 | 573..525 | 245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1940 | CG8587-RA | 1204..1832 | 650..19 | 3085 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12568386..12568953 | 588..19 | 2750 | 99.6 | Minus |
| 2R | 25286936 | 2R | 12568277..12568329 | 640..588 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:34:39 has no hits.
BO13078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:16 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8587-PA | 1031..1662 | 18..650 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:31 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8587-PA | 1031..1662 | 18..650 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:06:23 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 1204..1838 | 10..650 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:47:50 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 1204..1838 | 10..650 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:47:50 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12568268..12568329 | 588..650 | 98 | -> | Minus |
| 2R | 12568387..12568959 | 10..587 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:06:23 Download gff for
BO13078.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8455773..8455834 | 588..650 | 98 | -> | Minus |
| arm_2R | 8455892..8456464 | 10..587 | 98 | | Minus |
BO13078.5prime Sequence
708 bp (666 high quality bases) assembled on 2006-05-08
> BO13078.5prime
GAAGTTATCAGTCGACATGAACAATCTGTCGCTGAAAGCTTGGCGTTCCA
CAGTCTCCTGTGGCCCCAATCTTCGACAATGTGTGCCGAGGATCAGTGGA
GCAGGTTCCAGGCGAGCGCAGTGCCGCGAAAGCTCCACGGGCGTGGCCAC
TTGTCCCCATCTGGCGGATTCGGAGGAGGCCAGTGCACCGCGAATACACT
CCACTTCCGAGTGGCAAAACGCTCTGCCCTACAATCAAATACCCGGACCT
AAGCCCATCCCCATTCTGGGCAATACATGGAGACTGATGCCAATAATTGG
TCAATACACCATCTCTGATGTGGCCAAAATATCATCGCTGCTGCACGATC
GTTATGGTAGAATTGTGCGTTTTGGAGGTCTTATAGGACGGCCCGATCTT
TTGTTCATCTACGATGCCGATGAAATTGAAAAGTGCTATCGTAGCGAGGG
ACCCACCCCGTTCCGTCCCTCGATGCCCAGTTTGGTCAAGTACAAGAGTG
TGGTGCGCAAGGATTTCTTTGGGGATCTGGGCGGCGTAGTCGGAGTACAT
GGAGAGCCTTGGCGGGAGTTCCGTTCGCGTGTCCAGAAACCGGTGCTGCA
GTTGTCCACCATTCGCCGGTATCTACAGCCGCTGGAGGTTATCACCGAGG
ACTTCCTGGTGCGCTGCGAAAACCTGTTGGATGAAAACCAAGAGCTCCCC
GAGGATTT
BO13078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8587-PA | 1662 | Cyp301a1-RA | 1..692 | 17..708 | 3460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1940 | CG8587-RA | 174..865 | 17..708 | 3460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:54:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12566358..12566623 | 17..282 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 12567651..12567812 | 547..708 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 12567184..12567336 | 281..433 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12567482..12567596 | 432..546 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:54:38 has no hits.
BO13078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:17 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8587-PA | 1..692 | 17..708 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:33 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8587-PA | 1..692 | 17..708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:12 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 170..865 | 10..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:11 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 170..865 | 10..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:11 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12566354..12566623 | 10..282 | 98 | -> | Plus |
| 2R | 12567186..12567336 | 283..433 | 100 | -> | Plus |
| 2R | 12567484..12567596 | 434..546 | 100 | -> | Plus |
| 2R | 12567651..12567812 | 547..708 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:12 Download gff for
BO13078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8453859..8454128 | 10..282 | 98 | -> | Plus |
| arm_2R | 8454691..8454841 | 283..433 | 100 | -> | Plus |
| arm_2R | 8454989..8455101 | 434..546 | 100 | -> | Plus |
| arm_2R | 8455156..8455317 | 547..708 | 100 | | Plus |
BO13078.complete Sequence
1693 bp assembled on 2008-11-10
GenBank Submission: KX800031
> BO13078.complete
GAAGTTATCAGTCGACATGAACAATCTGTCGCTGAAAGCTTGGCGTTCCA
CAGTCTCCTGTGGCCCCAATCTTCGACAATGTGTGCCGAGGATCAGTGGA
GCAGGTTCCAGGCGAGCGCAGTGCCGCGAAAGCTCCACGGGCGTGGCCAC
TTGTCCCCATCTGGCGGATTCGGAGGAGGCCAGTGCACCGCGAATACACT
CCACTTCCGAGTGGCAAAACGCTCTGCCCTACAATCAAATACCCGGACCT
AAGCCCATCCCCATTCTGGGCAATACATGGAGACTGATGCCAATAATTGG
TCAATACACCATCTCTGATGTGGCCAAAATATCATCGCTGCTGCACGATC
GTTATGGTAGAATTGTGCGTTTTGGAGGTCTTATAGGACGGCCCGATCTT
TTGTTCATCTACGATGCCGATGAAATTGAAAAGTGCTATCGTAGCGAGGG
ACCCACCCCGTTCCGTCCCTCGATGCCCAGTTTGGTCAAGTACAAGAGTG
TGGTGCGCAAGGATTTCTTTGGGGATCTGGGCGGCGTAGTCGGAGTACAT
GGAGAGCCTTGGCGGGAGTTCCGTTCGCGTGTCCAGAAACCGGTGCTGCA
GTTGTCCACCATTCGCCGGTATCTACAGCCGCTGGAGGTTATCACCGAGG
ACTTCCTGGTGCGCTGCGAAAACCTGTTGGATGAAAACCAAGAGCTCCCC
GAGGATTTCGACAATGAGATTCACAAATGGTCCCTGGAATGCATTGGTCG
CGTTGCCCTCGACACTCGTTTGGGCTGCCTGGAATCGAATCTGAAGCCAG
ATTCGGAACCCCAGCAAATCATTGACGCCGCCAAGTATGCCCTGCGCAAC
GTGGCCACTTTGGAGCTGAAAGCTCCCTATTGGAGATACTTTCCCACGCC
TTTGTGGACGCGCTACGTGAAGAACATGAACTTTTTTGTTGGTGTCTGCA
TGAAGTACATTCAGAGTGCCACCGAAAGACTGAAGACCCAAGATCCCAGT
CTACGTGCCGGCGAGCCCTCGCTGGTGGAGAAGGTCATCCTTTCGCAGAA
GGACGAAAAAATAGCCACCATTATGGCACTTGATTTGATTCTCGTCGGAA
TAGATACGATATCCATGGCTGTTTGTTCGATGTTGTACCAACTGGCCACA
CGTCCAGTGGATCAGCAAAAGGTTCACGAGGAATTAAAGCGACTACTTCC
GGATCCAAACACACCACTCACAATTCCGCTGCTTGATCAGATGCACCACC
TGAAGGGCTTCATCAAGGAGGTGTTCCGCATGTACAGCACGGTGATTGGA
AACGGACGAACTCTCATGGAGGACAGTGTCATCTGTGGCTACCAGGTGCC
CAAGGGAGTGCAGGCGGTCTTTCCGACTATTGTCACGGGTAATATGGAGG
AGTATGTCACGGATGCAGCCACTTTCAGGCCCGAAAGATGGTTGAAACCA
CAGCATGGTGGTACTCCGGGCAAACTTCACCCGTTCGCCTCGCTGCCTTA
CGGCTATGGAGCTCGGATGTGTCTGGGTCGTCGATTCGCTGATCTGGAGA
TGCAAATACTGCTGGCCAAGCTACTACGAAACTACAAACTGGAGTACAAC
CACAAGCCACTGGATTACGCAGTCACTTTCATGTACGCGCCGGATGGACC
GCTGCGCTTTAAGATGACACGAGTTGCAAGCTTTCTAGACCAT
BO13078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1662 | CG8587-PA | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-RA | 1940 | CG8587-RA | 174..1832 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12568386..12568953 | 1108..1675 | 2840 | 100 | Plus |
| 2R | 25286936 | 2R | 12566358..12566623 | 17..282 | 1330 | 100 | Plus |
| 2R | 25286936 | 2R | 12567905..12568106 | 741..942 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 12567651..12567845 | 547..741 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 12568163..12568329 | 942..1108 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 12567184..12567336 | 281..433 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12567482..12567596 | 432..546 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:33:15 has no hits.
BO13078.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:16:36 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 168..1836 | 10..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:33 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 174..1832 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:44 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 172..1830 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:31 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp301a1-RA | 174..1832 | 17..1677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:31 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12567905..12568106 | 741..942 | 100 | -> | Plus |
| 2R | 12568164..12568329 | 943..1108 | 100 | -> | Plus |
| 2R | 12566358..12566623 | 17..282 | 100 | -> | Plus |
| 2R | 12567186..12567336 | 283..433 | 100 | -> | Plus |
| 2R | 12567484..12567596 | 434..546 | 100 | -> | Plus |
| 2R | 12567651..12567844 | 547..740 | 100 | -> | Plus |
| 2R | 12568387..12568953 | 1109..1677 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:33 Download gff for
BO13078.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8455156..8455349 | 547..740 | 100 | -> | Plus |
| arm_2R | 8455410..8455611 | 741..942 | 100 | -> | Plus |
| arm_2R | 8455669..8455834 | 943..1108 | 100 | -> | Plus |
| arm_2R | 8453863..8454128 | 17..282 | 100 | -> | Plus |
| arm_2R | 8454691..8454841 | 283..433 | 100 | -> | Plus |
| arm_2R | 8454989..8455101 | 434..546 | 100 | -> | Plus |
| arm_2R | 8455892..8456458 | 1109..1677 | 99 | | Plus |
BO13078.pep Sequence
Translation from 16 to 1693
> BO13078.pep
MNNLSLKAWRSTVSCGPNLRQCVPRISGAGSRRAQCRESSTGVATCPHLA
DSEEASAPRIHSTSEWQNALPYNQIPGPKPIPILGNTWRLMPIIGQYTIS
DVAKISSLLHDRYGRIVRFGGLIGRPDLLFIYDADEIEKCYRSEGPTPFR
PSMPSLVKYKSVVRKDFFGDLGGVVGVHGEPWREFRSRVQKPVLQLSTIR
RYLQPLEVITEDFLVRCENLLDENQELPEDFDNEIHKWSLECIGRVALDT
RLGCLESNLKPDSEPQQIIDAAKYALRNVATLELKAPYWRYFPTPLWTRY
VKNMNFFVGVCMKYIQSATERLKTQDPSLRAGEPSLVEKVILSQKDEKIA
TIMALDLILVGIDTISMAVCSMLYQLATRPVDQQKVHEELKRLLPDPNTP
LTIPLLDQMHHLKGFIKEVFRMYSTVIGNGRTLMEDSVICGYQVPKGVQA
VFPTIVTGNMEEYVTDAATFRPERWLKPQHGGTPGKLHPFASLPYGYGAR
MCLGRRFADLEMQILLAKLLRNYKLEYNHKPLDYAVTFMYAPDGPLRFKM
TRVASFLDH
BO13078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp301a1-PA | 553 | CG8587-PA | 1..553 | 1..553 | 2928 | 100 | Plus |
| Cyp49a1-PE | 589 | CG18377-PE | 73..585 | 41..551 | 1152 | 43.9 | Plus |
| Cyp49a1-PD | 589 | CG18377-PD | 73..585 | 41..551 | 1152 | 43.9 | Plus |
| Cyp49a1-PA | 589 | CG18377-PA | 73..585 | 41..551 | 1152 | 43.9 | Plus |
| Cyp49a1-PC | 415 | CG18377-PC | 4..411 | 150..551 | 904 | 44.1 | Plus |
