Clone Sequence Records
BO13081.3prime Sequence
604 bp (597 high quality bases) assembled on 2006-05-08
> BO13081.3prime
ATGGTCTAGAAAGCTTGCTTTGGTGGTGTGCCTCGCCCAGGTGGTCCTCT
GCACCTGGCTCATCATCTGGCTGCGATTGGGCACCTTCTCGCTGGTGCTG
CGTGTGATGAAACTGGGCGTGGCCGATAGCTTTCTTTGGTGACCCGCCTC
ATCGGTGACCCTCAGCAAAACCGTATTGAATCGCGTTTCCCGACTGCTGC
TACTATTGCTATTGCTATTATTGTTGTGGTTCTGGTTGCCATTGCTGCTT
CCAGGACTAATGTTGTTATTGCTGCTCCTCAAACGTGGCGAGGATGGGGA
GTCCAGGGTGGAGGAGCTACGACTGGTATCCCGCGTGCTGGTCGATCCTC
CACAGGCCAGTCCAGCCAGATTGCCATTGGACACCGCCGCCTTGAGTTGC
TCCTCCAGATTATTCAGATTCTGCTCGATGCTCAGGCGTATATCCTCGTT
CAAGGACGAACTCCCGGCAAAGGAATTCCGATTCATGGTGCCCAACGGTG
AGGGGGTCAGTGTTCCCGTGGCTGCCGGTGAGGTTAGGAAATTGAAAACC
TCCGGCTCCGCCAGCATTGTTGTTTGGCGTGGCCGGTGTGCAGGACAAGG
GATT
BO13081.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PA | 2097 | CG32048-RA | 1566..2094 | 547..19 | 2620 | 99.8 | Minus |
CG32048-PB | 2715 | CG32048-RB | 2184..2712 | 547..19 | 2620 | 99.8 | Minus |
CG32048-PA | 2097 | CG32048-RA | 1510..1568 | 604..546 | 295 | 100 | Minus |
CG32048-PB | 2715 | CG32048-RB | 2128..2186 | 604..546 | 295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RC | 3902 | CG32048-RB | 2585..3169 | 604..19 | 2890 | 99.7 | Minus |
CG42673-RB | 3618 | CG32048-RA | 2301..2885 | 604..19 | 2890 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9593192..9593776 | 604..19 | 2865 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-10 16:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 188..275 | 125 | 64.8 | Plus |
BO13081.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:22 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PA | 1510..2097 | 18..604 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:41 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PB | 2128..2715 | 18..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:58:22 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2301..2885 | 19..604 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:04 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 2301..2885 | 19..604 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:04 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9593192..9593776 | 19..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:58:22 Download gff for
BO13081.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9586292..9586876 | 19..604 | 99 | | Minus |
BO13081.5prime Sequence
796 bp (644 high quality bases) assembled on 2006-05-08
> BO13081.5prime
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCACAAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAA
CGCTCCGATATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGA
GCAGCAGCTATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGC
CCAAGAAAGAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCG
CAGCGGCCGAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAA
ATCGAACAGCCTGCTGTGGGATGTGGACGACAAGTCCGCCAGGCTC
BO13081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32048-PA | 2097 | CG32048-RA | 1..770 | 17..786 | 3800 | 99.7 | Plus |
CG32048-PB | 2715 | CG32048-RB | 1055..1388 | 453..786 | 1620 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RD | 3582 | CG42673-RD | 792..1570 | 17..796 | 3845 | 99.6 | Plus |
CG42673-RB | 3618 | CG32048-RA | 792..1570 | 17..796 | 3845 | 99.6 | Plus |
CG42673-RC | 3902 | CG32048-RB | 1512..1854 | 453..796 | 1665 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:30:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9588238..9588444 | 453..659 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 9581546..9581713 | 287..454 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9591239..9591347 | 658..766 | 545 | 100 | Plus |
3L | 28110227 | 3L | 9553435..9553536 | 17..118 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9581390..9581486 | 190..286 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9575649..9575722 | 117..190 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:30:44 has no hits.
BO13081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:23 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PA | 1..779 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:42 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-PA | 1..779 | 17..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:49 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 783..1570 | 6..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:25 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 783..1570 | 6..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:25 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9592086..9592114 | 767..796 | 93 | | Plus |
3L | 9553426..9553536 | 6..118 | 96 | -> | Plus |
3L | 9575651..9575722 | 119..190 | 100 | -> | Plus |
3L | 9581391..9581486 | 191..286 | 100 | -> | Plus |
3L | 9581546..9581713 | 287..454 | 100 | -> | Plus |
3L | 9588240..9588444 | 455..659 | 99 | -> | Plus |
3L | 9591241..9591347 | 660..766 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:49 Download gff for
BO13081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9546526..9546636 | 6..118 | 96 | -> | Plus |
arm_3L | 9568751..9568822 | 119..190 | 100 | -> | Plus |
arm_3L | 9574491..9574586 | 191..286 | 100 | -> | Plus |
arm_3L | 9574646..9574813 | 287..454 | 100 | -> | Plus |
arm_3L | 9581340..9581544 | 455..659 | 99 | -> | Plus |
arm_3L | 9584341..9584447 | 660..766 | 100 | -> | Plus |
arm_3L | 9585186..9585214 | 767..796 | 93 | | Plus |
BO13081.complete Sequence
2128 bp assembled on 2008-01-17
GenBank Submission: FJ632668
> BO13081.complete
GAAGTTATCAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATG
ACCAGGATCTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGC
ATCACATTTCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAA
CACTCGAGCCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCA
AAGTGCAGAATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAAT
GGCGTGCGCGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGAC
CAATGACCCCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATAT
TCTACGTGTCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCG
CGCGATGCCAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAA
AAAGTCTCAGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAG
TGTGCCACAAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAA
CGCTCCGATATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGA
GCAGCAGCTATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGC
CCAAGAAAGAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCG
CAGCGGCCGAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAA
ATCGAACAGCCTGCTGTGCGATGTGGACGACAAGTCGCCAGGCTCACCTT
CCTCGCCGCGCTCTGAGATCACTCAGCTGAAGGACCAGCTGGAGGCACAG
GCTCTGCAGACGCGCCAGGCTCTGGGTCAACTGATGCTGGTGCGGGAGCA
GCTCATCTCGGAGACCAATGCGCGCATCGAGGCACAGGCGCGCACCCAAC
AATTGCTGCAGCAGAACCGCGAGCTCCTGGAGCACCTGGCCTCTTTGGGG
GCCTACAATGAGCAGCAGACAGCCGGACTCACGTCGGCCAACATCGGAAT
GGCGCCACAGCAATCGCAGCTACAAATGCTGCTGCAGGCCACGAGCAACA
ACAACAATCTGGCCACGATCAACCAACAGATCAGCAATCTTGGCAGCATC
AATCAGCAGTTGACCTCGCTGAGTCACCAGCTGAGTGGCCTGAATCAGCA
GAGCCAGCACCTCCAGAATCTGCAGCAGCAGCAGCAACAACAGCAGCAGC
AGCAGCAGCAACAAACGCAGGCGGCACCGACTGCGGCCACGCCCCCTCCC
GCTGCGGGGGGCAGTAGTCCGTATCCGTCGATGAGTGCGCTGCAGAGCAT
CAGCAATCAGCTGCAGCAGCAGCAGCAACAACAGCAGCAGGACGCATTGT
CCAAGGATCTGTTCCAGGTGAATCAGGAGCTGTTGAATCGCCTGCAGGCA
CTGAACTTGAATGCCAATCCTGGCCAGAGCCAGCCAACGCCCTCGGCCAC
GGCGCACAACTCCTTCTTCTATGTGAATCCCTTGTCCTGCACACCGGCCA
CGCCAAACAACAATGCTGGCGGAGCCGGAGGTTTCAATTTCCTAACCTCA
CCGGCAGCCACGGGAACACTGACCCCCTCACCGTTGGGCACCATGAATCG
GAATTCCTTTGCCGGGAGTTCGTCCTTGAACGAGGATATACGCCTGAGCA
TCGAGCAGAATCTGAATAATCTGGAGGAGCAACTCAAGGCGGCGGTGTCC
AATGGCAATCTGGCTGGACTGGCCTGTGGAGGATCGACCAGCACGCGGGA
TACCAGTCGTAGCTCCTCCACCCTGGACTCCCCATCCTCGCCACGTTTGA
GGAGCAGCAATAACAACATTAGTCCTGGAAGCAGCAATGGCAACCAGAAC
CACAACAATAATAGCAATAGCAATAGTAGCAGCAGTCGGGAAACGCGATT
CAATACGGTTTTGCTGAGGGTCACCGATGAGGCGGGTCACCAAAGAAAGC
TATCGGCCACGCCCAGTTTCATCACACGCAGCACCAGCGAGAAGGTGCCC
AATCGCAGCCAGATGATGAGCCAGGTGCAGAGGACCACCTGGGCGAGGCA
CACCACCAAAGCAAGCTTTCTAGACCAT
BO13081.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:56:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RB | 2097 | CG42673-PB | 1..2094 | 17..2110 | 10440 | 99.9 | Plus |
CG42673-RC | 2715 | CG42673-PC | 1055..2712 | 453..2110 | 8260 | 99.9 | Plus |
CG42673-RD | 1317 | CG42673-PD | 1..1049 | 17..1065 | 5215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:56:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-RB | 3618 | CG32048-RA | 792..2885 | 17..2110 | 10440 | 99.9 | Plus |
CG42673-RC | 3902 | CG32048-RB | 1512..3169 | 453..2110 | 8260 | 99.9 | Plus |
CG42673-RD | 3582 | CG42673-RD | 792..1840 | 17..1065 | 5215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9592725..9593776 | 1059..2110 | 5245 | 99.9 | Plus |
3L | 28110227 | 3L | 9588238..9588444 | 453..659 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 9592085..9592257 | 766..938 | 865 | 100 | Plus |
3L | 28110227 | 3L | 9581546..9581713 | 287..454 | 840 | 100 | Plus |
3L | 28110227 | 3L | 9592332..9592456 | 936..1060 | 625 | 100 | Plus |
3L | 28110227 | 3L | 9591239..9591347 | 658..766 | 545 | 100 | Plus |
3L | 28110227 | 3L | 9553435..9553536 | 17..118 | 510 | 100 | Plus |
3L | 28110227 | 3L | 9581390..9581486 | 190..286 | 485 | 100 | Plus |
3L | 28110227 | 3L | 9575649..9575722 | 117..190 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 636..723 | 1941..1854 | 125 | 64.8 | Minus |
BO13081.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:36 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RA | 1..2097 | 17..2111 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:32:55 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RA | 792..2885 | 17..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:09:59 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 792..2885 | 17..2112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:36 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32048-RA | 783..2885 | 6..2110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:00:45 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42673-RB | 792..2885 | 17..2112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:00:45 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9553435..9553536 | 17..118 | 100 | -> | Plus |
3L | 9575651..9575722 | 119..190 | 100 | -> | Plus |
3L | 9581391..9581486 | 191..286 | 100 | -> | Plus |
3L | 9581546..9581713 | 287..454 | 100 | -> | Plus |
3L | 9588240..9588444 | 455..659 | 99 | -> | Plus |
3L | 9591241..9591347 | 660..766 | 100 | -> | Plus |
3L | 9592086..9592256 | 767..937 | 100 | -> | Plus |
3L | 9592334..9592456 | 938..1060 | 100 | -> | Plus |
3L | 9592727..9593776 | 1061..2112 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:09:59 Download gff for
BO13081.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9546535..9546636 | 17..118 | 100 | -> | Plus |
arm_3L | 9568751..9568822 | 119..190 | 100 | -> | Plus |
arm_3L | 9574491..9574586 | 191..286 | 100 | -> | Plus |
arm_3L | 9574646..9574813 | 287..454 | 100 | -> | Plus |
arm_3L | 9581340..9581544 | 455..659 | 99 | -> | Plus |
arm_3L | 9584341..9584447 | 660..766 | 100 | -> | Plus |
arm_3L | 9585186..9585356 | 767..937 | 100 | -> | Plus |
arm_3L | 9585434..9585556 | 938..1060 | 100 | -> | Plus |
arm_3L | 9585827..9586876 | 1061..2112 | 99 | | Plus |
BO13081.pep Sequence
Translation from 16 to 2128
> BO13081.pep
MPSTPYDLVQDDQDLRVPLHAEQAFFHGITFQAKFVGWEEVPRPNTRAEI
VQAMRRIRYECKVQNLKKRKVTIHISVNGVRVVLKKRRRKKKNWTNDPED
IELLNHPIYRIFYVSHDSSDLKIFSYIARDASTDTFKCSVFKSHKKSQAM
RIVRTVGQAFEVCHKFNLHKNSLEPNDERSDISSSELLDVEQISEQQLSE
DGERGGGDNETPKKEHLAITPDLNHTQPQRPNHLDIMPSHSSLRKSNSLL
CDVDDKSPGSPSSPRSEITQLKDQLEAQALQTRQALGQLMLVREQLISET
NARIEAQARTQQLLQQNRELLEHLASLGAYNEQQTAGLTSANIGMAPQQS
QLQMLLQATSNNNNLATINQQISNLGSINQQLTSLSHQLSGLNQQSQHLQ
NLQQQQQQQQQQQQQQTQAAPTAATPPPAAGGSSPYPSMSALQSISNQLQ
QQQQQQQQDALSKDLFQVNQELLNRLQALNLNANPGQSQPTPSATAHNSF
FYVNPLSCTPATPNNNAGGAGGFNFLTSPAATGTLTPSPLGTMNRNSFAG
SSSLNEDIRLSIEQNLNNLEEQLKAAVSNGNLAGLACGGSTSTRDTSRSS
STLDSPSSPRLRSSNNNISPGSSNGNQNHNNNSNSNSSSSRETRFNTVLL
RVTDEAGHQRKLSATPSFITRSTSEKVPNRSQMMSQVQRTTWARHTTKAS
FLDH
BO13081.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42673-PB | 698 | CG32048-PA | 1..698 | 1..698 | 3562 | 100 | Plus |
CG42673-PC | 904 | CG32048-PB | 333..904 | 127..698 | 2806 | 97 | Plus |
CG42673-PD | 438 | CG42673-PD | 1..350 | 1..350 | 1794 | 99.7 | Plus |
Pdp1-PC | 570 | CG17888-PC | 17..306 | 380..646 | 188 | 29.6 | Plus |
Pdp1-PL | 581 | CG17888-PL | 17..306 | 380..646 | 188 | 29.6 | Plus |