Clone Sequence Records
BO13084.5prime Sequence
697 bp (696 high quality bases) assembled on 2006-05-08
> BO13084.5prime
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGC
BO13084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5651-PA | 1836 | CG5651-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
| CG5651-PB | 1836 | CG5651-RB | 1..681 | 17..697 | 3405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-RB | 2184 | CG5651-RB | 71..752 | 16..697 | 3410 | 100 | Plus |
| pix-RA | 2223 | CG5651-RA | 110..791 | 16..697 | 3410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8973604..8974073 | 697..228 | 2350 | 100 | Minus |
| 3L | 28110227 | 3L | 8974134..8974347 | 229..16 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 09:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 307..219 | 115 | 61.8 | Minus |
BO13084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:28 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5651-PA | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:49 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5651-PB | 1..681 | 17..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:54:41 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 110..791 | 16..697 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:16:33 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 110..791 | 16..697 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:16:33 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8973604..8974071 | 230..697 | 100 | <- | Minus |
| 3L | 8974134..8974356 | 6..229 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:54:41 Download gff for
BO13084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8966704..8967171 | 230..697 | 100 | <- | Minus |
| arm_3L | 8967234..8967456 | 6..229 | 98 | | Minus |
BO13084.complete Sequence
1867 bp assembled on 2008-01-17
GenBank Submission: FJ632669
> BO13084.complete
GAAGTTATCAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACA
AGCAGACGCGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGG
TGTCGGCAGGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCT
CTGCATCGAGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGC
TGTGCATCGGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATC
ACAATCATCAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATA
CAGCAAGAACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTG
AAGTGCTCGGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTG
AAGATCCTCGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCC
GCCCGACTGGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGA
ACTACTTCACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCG
CAGTATGTGGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCT
TCTGGATAAGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGC
TGGATCTATCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGA
GAACTGCAACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACAT
CTTCATGTTCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGA
ACGCTGCCTTGACCATTCGATCACTCCTGCATCCCACCAAGTTTATTATT
GTGGTGGAGCACGATTTGTCTGTGCTGGATTACTTGTCTGACTTTATATG
CTGCCTTTACGGAGTTCCCGGCTGCTACGGTGTGGTTACTATGCCTTTCT
CTGTGCGCGAAGGCATCAACATTTTCCTCGATGGCTTTGTGCCCACCGAA
AACATGCGATTCCGCACTGAGTCACTTACTTTCAAAGTATCTGAGTCCGC
TACGGAGGAGGAGATCAAGCGCATGAACCACTACGTATATCCCGCCATGG
TCAAGACCCTGGGCAAGTTCGAGTTGACGGTGGAAAAGGGTCACTTCAGC
GACTCCGAGATCCTGGTGCTCCTGGGCGAGAACGGTACAGGAAAGACGAC
GTTCATTCGCATGCTGGCCGGTAACCTCCAACCCGATGGCGAGGTGGAAC
TGCCTATGCTGAATATTTCCTACAAGCCCCAGAAGATTTCCCCGAAATTC
CAAAATCATGTTCGCCATTTATTGCACGATAAGATTCGTGACGCCTACGT
GCATCCTCAGTTTATTGCCGATGTTATGAAACCCATGAAAATTGAGGAAA
TCATGGACCAGGAGGTGCAGAACCTTTCCGGTGGTGAGTTGCAGCGAGTC
GCCTTGGTCCTGTGTCTTGGCAAGCCAGCGGATGTCTACCTCATCGACGA
ACCCTCTGCCTACTTGGATTCAGAGCAGCGTCTGGTGGCCGCCAAGGTTA
TCAAACGTTACATTCTGCACGCCAAGAAAACTGGATTTGTGGTGGAGCAC
GATTTCATCATGGCCACCTACCTCGCCGACCGTGTCATCGTGATCGAGGG
TCAGCCTTCAGTGAAGACGACAGCCTTTTCGCCGCAGTCGCTGCTAAATG
GCATGAACCGCTTCCTCGAACTGCTTGGTATTACGTTCCGTCGCGATCCC
AACAACTTCAGACCCCGCATTAACAAAAACAATTCGGTCAAGGACACAGA
ACAGAAACGCTCCGGCCAGTTCTTCTTCTTGGAGGACGAAGCCTGCAACG
CAAGCTTTCTAGACCAT
BO13084.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-RB | 1836 | CG5651-PB | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| pix-RA | 1836 | CG5651-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-RB | 2184 | CG5651-RB | 71..1904 | 16..1849 | 9170 | 100 | Plus |
| pix-RA | 2223 | CG5651-RA | 110..1943 | 16..1849 | 9170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8972685..8973401 | 1557..841 | 3585 | 100 | Minus |
| 3L | 28110227 | 3L | 8973459..8974073 | 842..228 | 3075 | 100 | Minus |
| 3L | 28110227 | 3L | 8972336..8972628 | 1849..1557 | 1465 | 100 | Minus |
| 3L | 28110227 | 3L | 8974134..8974347 | 229..16 | 1070 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 307..219 | 115 | 61.8 | Minus |
BO13084.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:01:37 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RB | 1..1836 | 17..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:00 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RB | 72..1904 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:32 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 111..1943 | 17..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:01:40 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RB | 62..1908 | 6..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:16 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 111..1943 | 17..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:16 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8972334..8972627 | 1558..1851 | 99 | <- | Minus |
| 3L | 8972685..8973401 | 841..1557 | 100 | <- | Minus |
| 3L | 8973461..8974071 | 230..840 | 100 | <- | Minus |
| 3L | 8974134..8974346 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:32 Download gff for
BO13084.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8965434..8965727 | 1558..1851 | 99 | <- | Minus |
| arm_3L | 8965785..8966501 | 841..1557 | 100 | <- | Minus |
| arm_3L | 8966561..8967171 | 230..840 | 100 | <- | Minus |
| arm_3L | 8967234..8967446 | 17..229 | 100 | | Minus |
BO13084.pep Sequence
Translation from 16 to 1867
> BO13084.pep
MSRRKENEEVDKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVT
PTSKIASLSEELCIGCGICVKKCPFEAITIINLPSNLEKHTTHRYSKNSF
KLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLGKYANPPDWTE
ILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKD
ERELQTKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDE
PSSYLDVKQRLNAALTIRSLLHPTKFIIVVEHDLSVLDYLSDFICCLYGV
PGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTESLTFKVSESATEEEI
KRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML
AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFI
ADVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL
DSEQRLVAAKVIKRYILHAKKTGFVVEHDFIMATYLADRVIVIEGQPSVK
TTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTEQKRSG
QFFFLEDEACNASFLDH
BO13084.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-PB | 611 | CG5651-PB | 1..611 | 1..611 | 3172 | 100 | Plus |
| pix-PA | 611 | CG5651-PA | 1..611 | 1..611 | 3172 | 100 | Plus |
| CG34120-PD | 1981 | CG34120-PD | 1641..1839 | 370..559 | 175 | 28.6 | Plus |
| CG34120-PC | 1997 | CG34120-PC | 1657..1855 | 370..559 | 175 | 28.6 | Plus |
| CG34120-PE | 1998 | CG34120-PE | 1658..1856 | 370..559 | 175 | 28.6 | Plus |
