Clone BO13086 Report

Search the DGRC for BO13086

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:130
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL42-RA
Protein status:BO13086.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO13086.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO13086.5prime
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTAGCAAGCTTTCTA
GACC

BO13086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG12921-PA 375 mRpL42-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:57
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..403 17..388 1860 100 Plus
mRpL42-RA 593 CG12921-RA 165..536 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067185 17..388 1860 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:17:54 has no hits.

BO13086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:30 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:52 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:41 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 11..398 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:46:50 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 11..398 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:46:50 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067193 17..398 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:41 Download gff for BO13086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954698 17..398 98   Plus

BO13086.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO13086.3prime
ATGGTCTAGAAAGCTTGCTAGGTACGGCCGGTCCATCGGCGTTTGCTTGG
CCTTCCTGTCGCGGGCGCGTGGAAACCAGCGGTGTTTAGTCGTGTGGGTC
AGCTGCATCAGCTCCTGGCGAGCCACTTCTGGATGTTTGCTTTTAAAGGC
ACGCATCGCCGTCTTCAGAGCCGATTCCTTAACCACCGCCGAGCTCTGAA
TCTCGCTGATCTCTGGCAGCGGCAGGGTGTTCTCGTAGGGAACTGGTGTG
TCCGGATGCCAGGCCACAATGGTGCGACCATTTTTGGTCACTGCCACGGC
CTCCACCAGGCTCTTGCCACCGACGGCATTGCGCTGCACGGCACTCGAGG
AAAATAAACGAAATCCTCCGTATAAACGTGCCGCTGACATGTCGACTGAT
AACT

BO13086.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG12921-PA 375 mRpL42-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..403 390..19 1860 100 Minus
mRpL42-RA 593 CG12921-RA 165..536 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067185 390..19 1860 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:54:34 has no hits.

BO13086.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:29 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:51 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12921-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:06 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 9..396 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:12 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 159..544 9..396 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:12 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067193 9..390 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:06 Download gff for BO13086.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954698 9..390 98   Minus

BO13086.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632670

> BO13086.complete
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTAGCAAGCTTTCTA
GACCAT

BO13086.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 375 CG12921-PB 1..372 17..388 1860 100 Plus
mRpL42-RA 375 CG12921-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-RB 460 CG12921-RB 32..403 17..388 1860 100 Plus
mRpL42-RA 593 CG12921-RA 165..536 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10066814..10067185 17..388 1860 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:20:28 has no hits.

BO13086.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:30 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:09 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 160..545 11..398 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:19 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 165..536 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:30 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 160..545 11..398 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:45 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL42-RA 165..536 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:45 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10066814..10067185 17..390 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:19 Download gff for BO13086.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5954319..5954690 17..390 99   Plus

BO13086.pep Sequence

Translation from 16 to 406

> BO13086.pep
MSAARLYGGFRLFSSSAVQRNAVGGKSLVEAVAVTKNGRTIVAWHPDTPV
PYENTLPLPEISEIQSSAVVKESALKTAMRAFKSKHPEVARQELMQLTHT
TKHRWFPRARDRKAKQTPMDRPYLASFLDH

BO13086.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL42-PB 124 CG12921-PB 1..124 1..124 637 100 Plus
mRpL42-PA 124 CG12921-PA 1..124 1..124 637 100 Plus