Clone Sequence Records
BO13086.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO13086.5prime
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTAGCAAGCTTTCTA
GACC
BO13086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12921-PA | 375 | mRpL42-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:17:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..403 | 17..388 | 1860 | 100 | Plus |
mRpL42-RA | 593 | CG12921-RA | 165..536 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:17:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067185 | 17..388 | 1860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:17:54 has no hits.
BO13086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:30 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:52 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:41 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 11..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:46:50 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 11..398 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:46:50 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067193 | 17..398 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:41 Download gff for
BO13086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954698 | 17..398 | 98 | | Plus |
BO13086.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO13086.3prime
ATGGTCTAGAAAGCTTGCTAGGTACGGCCGGTCCATCGGCGTTTGCTTGG
CCTTCCTGTCGCGGGCGCGTGGAAACCAGCGGTGTTTAGTCGTGTGGGTC
AGCTGCATCAGCTCCTGGCGAGCCACTTCTGGATGTTTGCTTTTAAAGGC
ACGCATCGCCGTCTTCAGAGCCGATTCCTTAACCACCGCCGAGCTCTGAA
TCTCGCTGATCTCTGGCAGCGGCAGGGTGTTCTCGTAGGGAACTGGTGTG
TCCGGATGCCAGGCCACAATGGTGCGACCATTTTTGGTCACTGCCACGGC
CTCCACCAGGCTCTTGCCACCGACGGCATTGCGCTGCACGGCACTCGAGG
AAAATAAACGAAATCCTCCGTATAAACGTGCCGCTGACATGTCGACTGAT
AACT
BO13086.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:57:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12921-PA | 375 | mRpL42-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..403 | 390..19 | 1860 | 100 | Minus |
mRpL42-RA | 593 | CG12921-RA | 165..536 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067185 | 390..19 | 1860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:54:34 has no hits.
BO13086.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 05:54:29 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:36:51 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12921-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:02:06 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 9..396 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:48:12 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 159..544 | 9..396 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:48:12 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067193 | 9..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:02:06 Download gff for
BO13086.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954698 | 9..390 | 98 | | Minus |
BO13086.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632670
> BO13086.complete
GAAGTTATCAGTCGACATGTCAGCGGCACGTTTATACGGAGGATTTCGTT
TATTTTCCTCGAGTGCCGTGCAGCGCAATGCCGTCGGTGGCAAGAGCCTG
GTGGAGGCCGTGGCAGTGACCAAAAATGGTCGCACCATTGTGGCCTGGCA
TCCGGACACACCAGTTCCCTACGAGAACACCCTGCCGCTGCCAGAGATCA
GCGAGATTCAGAGCTCGGCGGTGGTTAAGGAATCGGCTCTGAAGACGGCG
ATGCGTGCCTTTAAAAGCAAACATCCAGAAGTGGCTCGCCAGGAGCTGAT
GCAGCTGACCCACACGACTAAACACCGCTGGTTTCCACGCGCCCGCGACA
GGAAGGCCAAGCAAACGCCGATGGACCGGCCGTACCTAGCAAGCTTTCTA
GACCAT
BO13086.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 375 | CG12921-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
mRpL42-RA | 375 | CG12921-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-RB | 460 | CG12921-RB | 32..403 | 17..388 | 1860 | 100 | Plus |
mRpL42-RA | 593 | CG12921-RA | 165..536 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10066814..10067185 | 17..388 | 1860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:20:28 has no hits.
BO13086.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:35:30 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:00:09 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 160..545 | 11..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:50:19 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 165..536 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:35:30 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 160..545 | 11..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:45 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL42-RA | 165..536 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:45 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10066814..10067185 | 17..390 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:50:19 Download gff for
BO13086.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5954319..5954690 | 17..390 | 99 | | Plus |
BO13086.pep Sequence
Translation from 16 to 406
> BO13086.pep
MSAARLYGGFRLFSSSAVQRNAVGGKSLVEAVAVTKNGRTIVAWHPDTPV
PYENTLPLPEISEIQSSAVVKESALKTAMRAFKSKHPEVARQELMQLTHT
TKHRWFPRARDRKAKQTPMDRPYLASFLDH
BO13086.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL42-PB | 124 | CG12921-PB | 1..124 | 1..124 | 637 | 100 | Plus |
mRpL42-PA | 124 | CG12921-PA | 1..124 | 1..124 | 637 | 100 | Plus |